Structural modification changes the DNA binding mode of cation- substituted anthraquinone photonucleases: Association by intercalation or minor groove binding determines the DNA cleavage efficiency

Biochemistry

Volumn 36, Issue 34, 1997, Pages 10463-10473

  Breslin, David T ^a   Yu, Changjun ^a   Ly, Danith ^a   Schuster, Gary B ^a  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTHRAQUINONE DERIVATIVE; CATION; DNA; DOUBLE STRANDED DNA; NUCLEASE; NUCLEOTIDE;

ABSORPTION; ARTICLE; CIRCULAR DICHROISM; DNA BINDING; DNA CLEAVAGE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; NUCLEAR OVERHAUSER EFFECT; PRIORITY JOURNAL;

ANTHRAQUINONES; CATIONS; CIRCULAR DICHROISM; DNA; DNA DAMAGE; INTERCALATING AGENTS; LUMINESCENT MEASUREMENTS; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOLECULAR STRUCTURE; OLIGODEOXYRIBONUCLEOTIDES; PHOTOLYSIS; SPECTROPHOTOMETRY;

EID: 0030851837     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9702750     Document Type: Article

References (62)

1. Armitage, B., & Schuster, G. B. (1997) Photochem. Photobiol. (in press).
2. Armitage, B., Yu, C., Devadoss, C., & Schuster, G. B. (1994) J. Am. Chem. Soc. 116, 9847-9859.
3. Barton, J. K. (1986) Science 233, 727.
4. Breiner, K. M., Daugherty, M. A., Oas, T. G., & Thorp, H. H. (1995) J. Am. Chem. Soc. 117, 11673-11679.
5. Breslin, D. T., & Schuster, G. B. (1996) J. Am. Chem. Soc. 118, 2311-2319.
6. Breslin, D. T., & Schuster, G. B (1997) J. Am. Chem. Soc. 119 (in press).
7. Brun, A. M., & Harriman, A. (1992) J. Am. Chem. Soc. 114, 3656.
8. Cadet, J., Berger, M., Decarroz, C., Wagner, J. R., Van Lier, J. E., Ginot, Y. M., & Vigny, P. (1986) Biochimie 68, 813.
9. Cheng, C.-C., Goll, J. G., Neyhart, G. A., Welch, T. W., Singh, P., & Thorp, H. H. (1995) J. Am. Chem. Soc. 117, 2970.
10. Coury, J., Williams, L., Bottemley, L. A., Breslin, D. T., & Schuster, G. B. (1997) J. Am. Chem. Soc. (submitted for publication).
11. Cullis, P. M., Malone, M. E., & Merson-Davies, L. A. (1996) J. Am. Chem. Soc. 118, 2715.
12. Dizdaroglu, M. (1984) J. Chromatogr. 295, 103.
13. Eriksson, M., Leijon, M., Hiort, C., Nordén, B., & Gräslund, A. (1994) Biochemistry 33, 5031-5040.
14. Floyd, R. A., West, M. S., Eneff, K. L., & Schneider, J. E. (1989) Arch. Biochem. Biophys. 273, 106.
15. Gräslund, A., & Leijon, M. (1992) Nucleic Acids Res. 20, 5339-5343.
16. Hall, D. B., Holmlin, R. E., & Barton, J. K. (1996) Nature 382, 731.
17. Hare, D. R., Wemmer, D. E., Drobny, G., & Reid, B. R. (1983) J. Mol. Biol. 171, 319-336.
18. Hertzberg, R. P., & Dervan, P. B. (1982) J. Am. Chem. Soc. 104, 313.
19. Hertzberg, R. P., & Dervan, P. B. (1984) Biochemistry 23, 3934.
20. Ito, K., Inoue, S., Yamamoto, K., & Kawanishi, S. (1993) J. Biol. Chem. 268, 13221-13227.
21. Iverson, B. L. (1988) Ph.D. Thesis, California Institute of Technology, Pasadena, CA.
22. Jeppesen, C., & Nielsen, P. E. (1988) Nucleic Acids Res. 17, 4947-4959.
23. Jovanovic, S. V., & Simic, M. G. (1986) J. Phys. Chem. 90, 976.
24. Koch, T., Ropp, J. D., Sligar, S. G., & Schuster, G. B. (1993) Photochem. Photobiol. 58, 554-558.
25. Liang, G., Gannett, P., Shi, X., Zhang, Y., Chen, F.-X., & Gold, B. (1994) J. Am. Chem. Soc. 116, 1131.
26. Ly, D., Kan, Y., Armitage, B., & Schuster, G. B. (1996) J. Am. Chem. Soc. 118, 1847-1848.
27. Lyng, R., Roger, A., & Nordèn, B. (1991a) Biopolymers 31, 1709-1720.
28. Lyng, R., Roger, A., & Nordèn, B. (1991b) Biopolymers 32, 1201-1214.
29. Nagai, K., Carter, B. J., Xu, J., & Hecht, S. M. (1991) J. Am. Chem. Soc. 113, 5099.
30. Nelson, H. C. M., Sinch, D. T., Luisi, B. F., & Klug, A. (1987) Nature 330, 211-226.
31. Neyhart, G. A., Grover, N., Smith, S. R., Kalsbeck, W. A., Fairley, T. A., Cory, M., & Thorp, H. H. (1993) J. Am. Chem. Soc. 115, 4423.
32. Nicolau, K. C., Maligres, P., Shin, J., de Leon, E., & Rideout, D. (1990) J. Am. Chem. Soc. 112, 7825.
33. Nielsen, P. E. (1991) Bioconjugate Chem. 2, 1.
34. Nielsen, P. E., Hiort, C., Sonnichsen, S. H., Buchardt, O., Dahl, O., & Nordén, B. (1992) J. Am. Chem. Soc. 114, 4967-4975.
35. Papavassiliou, A. G. (1995) Biochem. J. 305, 345.
36. Parkinson, J. A., Ebrahimi, S. E., McKie, J. H., & Douglas, K. T. (1994) Biochemistry 33, 8442-8452.
37. Patel, D. J., Kozlowski, S. A., Rice, J. A., Broka, C., & Itakura, K. (1981) Proc. Natl. Acad. Sci. U.S.A. 78, 7281-7284.
38. Phillips, D. R., & Roberts, G. C. K. (1980) Biochemistry 21, 4795.
39. Pratviel, G., Bernadou, J., & Meunier, B. (1995) Angew. Chem., Int. Ed. Engl. 34, 746-769.
40. Pullman, A., & Pullman, B. (1981) Q. Rev. Biophys. 14, 289-380.
41. Ranganathan, D., Patel, B. K., & Mishra, R. K. (1994) J. Chem. Soc., Chem. Commun. 107.
42. Raoul, S., & Cadet, J. (1996) J. Am. Chem. Soc. 118, 1892.
43. Riordan, C. G., & Wei, P. (1994) J. Am. Chem. Soc. 116, 2189.
44. Saito, I., Takayama, M., & Matsuura, T. (1990) J. Am. Chem. Soc. 112, 883.
45. Saito, I., Takayama, M., Sugiyama, M., & Nakatani, K. (1995) J. Am. Chem. Soc. 117, 6406.
46. Schnaith, L. M. T., Hanson, R. S., & Que, L., Jr. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 569.
47. Sheu, C., & Foote, S. C. (1995) J. Am. Chem. Soc. 117, 6439.
48. Siato, I., & Takayama, M. (1995) J. Am. Chem. Soc. 117, 5590-5591.
49. Siato, I., Takayama, M., Sugiyama, H., & Nakatani, K. (1995) J. Am. Chem. Soc. 117, 6406-6407.
50. Siebenlist, U., Simpson, R. B., & Gilbert, W. (1980) Cell 20, 269.
51. Sigman, D. S. (1986) Acc. Chem. Res. 19, 180.
52. Sigman, D. S., Mazumder, A., & Perrin, D. M. (1993) Chem. Rev. 93, 2295-2316.
53. Sitlani, A., Long, E. C., Pyle, A. M., & Barton, J. K. (1992) J. Am. Chem. Soc. 114, 2303-2312.
54. Stubbe, J., & Kozarich, J. W. (1987) Chem. Rev. 87, 1107.
55. Sugiyama, H., & Saito, I. (1996) J. Am. Chem. Soc. 118, 7063-7068.
56. Takasaki, B. K., & Chin, J. (1994) J. Am. Chem. Soc. 116, 1121.
57. Takayama, M. (1995) Ph.D. Thesis, Kyoto University, Kyoto, Japan.
58. Tullius, T. D., Dombroski, B. A., Churchill, M. E. A., & Kam, L. (1987) Methods Enzymol. 155, 537.
59. Uchida, K., Pyle, A. M., Morii, T., & Barton, J. K. (1989) Nucleic Acids Res. 17, 10259.
60. Wilson, W. D., Tanious, F. A., Barton, H. J., Strekowski, L., & Boykin, D. W. (1989a) J. Am. Chem. Soc. 111, 5008-5010.
61. Wilson, W. D., Tanious, F. A., Watson, R. A., Barton, H. J., Strekowska, A., Harden, D. B., & Strekowski, L. (1989b) Biochemistry 28, 1984-1992.
62. Wilson, W. D., Tanious, F. A., Barton, H. J., Jones, R. L., Fox, K., Wydra, R. L., & Strekowski, L. (1990) Biochemistry 29, 8452.