Nucleic acids structure and recognition

Nature Structural Biology

Volumn 4, Issue SUPPL., 1997, Pages 854-858

  Chang, Kung Yao ^a   Varani, Gabriele ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA BINDING PROTEIN; RIBONUCLEOPROTEIN; RNA; TRANSCRIPTION FACTOR;

DNA STRUCTURE; MOLECULAR RECOGNITION; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN TARGETING; RETROVIRUS; RNA STRUCTURE; SHORT SURVEY;

DNA; MODELS, MOLECULAR; MODELS, STRUCTURAL; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; NUCLEIC ACID CONFORMATION; PEPTIDES; PROTEIN STRUCTURE, SECONDARY; RIBONUCLEOPROTEINS; RNA;

EID: 0030824855     PISSN: 10728368     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Short Survey

References (20)

1. Nikonowicz, E.P. & Pardi, A. Three-dimensional heteronuclear NMR studies of RNA. Nature 355, 184-186 (1992).
2. Batey, R.T, Battiste, J.L. & Williamson, J.R. Preparation of isotopically enriched RNAs for heteronuclear NMR. Meth. Enz. 261, 300-322 (1995).
3. Varani, G. & Tinoco, I., Jr. RNA structure and NMR spectroscopy. Q. Rev. Biophys. 24, 479-532 (1991).
4. Varani, G., Aboul-ela, F. & Allain, F.H.-T. NMR investigations of RNA structure. Prog. NMR Spectr. 29, 51-127 (1996).
5. 15N-labelled DNA oligonucleotides. Proc. Natl. Acad. Sci. USA 92, 3091-3095 (1995).
6. Tolbert, TJ. & Williamson, J.R. Preparation of a specifically Deuterated RNA for NMR studies using a combination of chemical and enzymatic synthesis. J. Am. Chem. Soc 118, 7929-7940 (1996).
7. Xu, J., Lapham, J. & Crothers, D.M. Determining RNA solution structure by segmental isotopic labelling and NMR: application to Caernorhabditis elegans spliced leader RNA 1. Proc Natl. Acad. Sci. USA 93, 44-48 (1996).
8. Glemarec, C., et al. The NMR structure of 31mer RNA domain of Escherichia coli RNAse P using its non-uniformly deuterium labelled counterpart [the 'NMR-window' concept]. Nucleic Acids Res. 24, 2022-2035 (1996).
9. Metzler, W.J., Wang, C., Kitche, D.B., Levy, R.M. & Pardi, A. Determining local conformational variations in DNA. nuclear magnetic resonance structures of the DNA duplexes d(CGCCTAATCG) and d(CGTCACGCGC) generated using back-calculation of the nuclear overhauser effect spectra, a distance geometry algorithm and constrained molecular dynamics. J. Mol. Biol. 214, 711-736 (1990).
10. Allain, F.H.-T. & Varani, G. How accurately and precisely can RNA structure be determined by NMR? J. Mol. Biol. 267, 338-351 (1997).
11. Heus, H.A. & Pardi, A. Structural features that give rise to the unusual stability for RNA hairpins containing GNRA loops. Science 253, 191-194 (1991).
12. Cheong, C., Varani, G. & Tinoco, I., Jr. Solution structure of an unusually stable RNA hairpin, 5′GGAC(UUCG)GUCC. Nature 346, 680-682 (1990).
13. Tuerk, C., et al. CUUCGG Hairpins: extraordinarily stable RNA secondary structures associated with various biochemical processes. Proc. Natl. Acad. Sci. USA 85, 1364-1368 (1988).
14. Chen, X., et al. A Characteristic bent conformation of RNA pseudoknots promotes -1 frameshift during translation of retroviral RNA. J. Mol. Biol. 260, 479-483 (1996).
15. Marino, J.P., Gregorian, R.S.J, Csankovszki, G. & Crothers, D.M. Bent helix formation between RNA hairpins with complementary loops. Science 268, 1448-1454 (1995).
16. Chang, K.-Y. & Tinoco, I.J. The structure of an RNA "kissing" hairpin complex of the HIV TAR hairpin loop and its complement. J. Mol. Biol. 269, 52-66 (1997).
17. Yang, Y, Kochoyan, M., Burgstaller, P., Westhof, E. & Famulok, M. Structural basis of ligand discrimination by two related RNA aptamers resolved by NMR spectroscopy. Science 272, 1343-1347 (1996).
18. Dieckmann, T., Suzuki, E., Nakamura, G.K. & Feigon, J. Solution structure of an ATP-binding RNA aptamer reveals a novel fold. RNA 2, 628-640 (1996).
19. Fan, P., Suri, A.K., Fiala, R, Live, D. & Patel, D.J. Molecular recognition in the FMN-RNA aptamer complex. J. Mol. Biol. 258, 480-500 (1996).
20. Jiang, F., Kumar, R.A., Jones, R.A. & Patel, D.J. Structural basis of RNA folding and recognition in an AMP-RNA aptamer complex. Nature 382, 183-186 (1996).