Cell proteins bind specifically to West Nile virus minus-strand 3' stem-loop RNA

Journal of Virology

Volumn 70, Issue 9, 1996, Pages 6278-6287

  Shi, Pei Yong ^a,b   Wei, L I ^a   Brinton, Margo A ^a  

^a GEORGIA STATE UNIVERSITY   (United States)

^b YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ARTICLE; HAMSTER; NONHUMAN; PRIORITY JOURNAL; PROTEIN RNA BINDING; RNA STRUCTURE; RNA SYNTHESIS; VIRUS RESISTANCE; WEST NILE FLAVIVIRUS;

EID: 9444225980     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.70.9.6278-6287.1996     Document Type: Article

References (65)

1. Bang, F., and A. Warwick. 1960. Mouse macrophages as host cells for the mouse hepatitis virus and the genetic basis of their susceptibility. Proc. Natl. Acad. Sci. USA 46:1065-1075.
2. Barton, D. J., E. P. Black, and J. B. Flanegan. 1995. Complete replication of poliovirus in vitro: preinitiation RNA replication complexes require soluble cellular factors for the synthesis of VPg-linked RNA. J. Virol. 69:5516-5527.
3. Barton, D. J., S. G. Sawicki, and D. L. Sawicki. 1991. Solubilization and immunoprecipitation of alphavirus replication complexes. J. Virol. 65:1496-1506.
4. Bentley, R. C., and J. D. Keene. 1991. Recognition of U2 small nuclear RNAs can be altered by a 5-amino-acid segment in the U2 small nuclear ribonucleoprotein particle (snRNP) B″ and through interactions with U2 snRNP-A′ protein. Mol. Cell. Biol. 11:1829-1839.
5. Blackwell, J. L., and M. A. Brinton. 1995. BHK cell proteins that hind to the 3′ stem-loop structure of the West Nile virus genome RNA. J. Virol. 69: 5650-5658.
6. Blackwell, J. L., and M. A. Brinton. Unpublished data.
7. Brinton, M. A. 1981. Isolation of a replication-efficient mutant of West Nile virus from a persistently infected genetically resistant mouse cell culture. J. Virol. 39:413-421.
8. Brinton, M. A. 1983. Analysis of extracellular West Nile virus particles produced by cell cultures from genetically resistant and susceptible mice indicates enhanced amplification of defective interfering particles by resistant cultures. J. Virol. 46:860-870.
9. Brinton, M. A. 1986. Replication of flaviviruses, p. 329-376. In S. Schlesinger and M. Schlesinger (ed.), The viruses. The Togaviridae and Flaviviridae. Plenum Publishing Corp., New York.
10. Brinton, M. A., H. Arnheiter, and O. Haller. 1982. Interferon independence of genetically controlled resistance to flaviviruses. Infect. Immun. 36:284-288.
11. Brinton, M. A., and J. H, Dispoto. 1988. Sequence and secondary structure analysis of the 5'-terminal region of flavivirus genome RNA. Virology 162:290-299.
12. Brinton, M. A., A. V. Fernandez, and J. H. Dispoto. 1986. The 3' -nucleotides of flavivirus genomic RNA form a conserved secondary structure. Virology 153:113-121.
13. Cahour, A., A. Pletnev, M. Vazeille-Falcoz, L. Rosen, and C.-J. Lai. 1995. Growth-restricted dengue virus mutants containing deletions in the 5' noncoding region of the RNA genome. Virology 207:68-76.
14. Chambers, T. J., C. S. Hahn, R. Galler, and C. M. Rice. 1990. Flavivirus genome organization, expression, and replication. Annu. Rev. Microbiol. 44:649-688.
15. Cleaves, G. R., T. E. Ryan, and R. W. Schlesinger. 1981. Identification and characterization of type 2 dengue virus replicative intermediate and replicalive form RNAs. Virology 111:73-83.
16. Darnell, M. B., and H. Kaprowski. 1974. Genetically determined resistance to infection with group B arboviruses. II. Increased production of interfering particles in cell cultures from resistant mice. J. Infect. Dis. 129:248-256.
17. Darnell, M. B., H. Koprowski, and K. Lagerspetz. 1974. Genetically determined resistance to infection with group B arboviruses. I. Distribution of the resistance gene among various mouse populations and characteristics of gene expression in vivo. J. Infect. Dis. 129:240-247.
18. Furuya, T., and M. M. C. Lai. 1993. Three different cellular proteins bind to complementary sites on the 5'-end-positive and 3'-end-negative strands of mouse hepatitis virus RNA. J. Virol. 67:7215-7222.
19. Goodman, G. T., and H. Koprowski. 1962. Study of the mechanism of innate resistance to virus infection. J. Cell. Comp. Physiol. 59:333-342.
20. Green, K. L., R. L. Jones, Y. Li, H. Robinson, A. H. Wang, G. Zon, and W. D. Wilson. 1994. Solution structure of a GA mismatch DNA sequence, d(CC ATGAATGG)2, determined by 2D NMR and structural refinement methods. Biochemistry 33:1053-1062.
21. Groshel, D., and H. Koprowski. 1965. Development of a virus-resistant inbred mouse strain for the study of innate resistance to arbo B viruses. Arch. Gesamte Virusforsch. 18:379-391.
22. Haller, O. 1981. Inborn resistance of mice to orthomyxoviruses. Curr. Top. Microbiol. Immunol. 92:25-52.
23. Hanson, B., and H. Koprowski. 1969. Interferon-mediated natural resistance of mice to arbo B virus infection. Microbios 1B:51-68.
24. Hayes, R. J., and K. W. Buck. 1990. Complete replication of a eukaryotic virus RNA in vitro by a purified RNA-dependent RNA polymerase. Cell 63:363-368.
25. Heus, H. A., and A. Pardi. 1991. Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops. Science 253:191-194.
26. Horisberger, M. A., O. Haller, and H. Arnheiter. 1980. Interferon-dependent genetic resistance to influenza virus in mice: virus replication in macrophages is inhibited at an early step. J. Gen. Virol. 50:205-210.
27. Horisberger, M. A., P. Staeheli, and O. Haller. 1983. Interferon induces a unique protein in mouse cells bearing a gene for resistance to influenza virus. Proc. Nail. Acad. Sci. USA 80:1910-1914.
28. Huang, T., J. Pavlovic, P. Staeheli, and M. Krystal. 1992. Overexpression of the influenza virus polymerase can titrate out inhibition by the murine Mx1 protein. J. Virol. 66:4154-4160.
29. Jacobson, S. J., D. A. M. Konings, and P. Sarnow. 1993. Biochemical and genetic evidence for a pseudoknot structure at the 3' terminus of the poliovirus RNA genome and its role in viral RNA amplification. J. Virol. 67: 2961-2971.
30. Jolicoeur, P. 1979. The Fv-l gene of the mouse and its control of murine leukemia virus replication. Curr. Top. Microbiol, Immunol. 86:67-122.
31. Kibler-Herzog, L., B. Kell, G. Zon, K. Shinozuka, S. Mizan, and W. D. Wilson. 1990. Sequence dependent effects in methylphosphonate deoxyribonucleotide double and triple helical complexes. Nucleic Acids Res. 18:3545-3555.
32. Knapp, G. 1989. Enzymatic approaches to probing of RNA secondary and tertiary structure. Methods Enzymol. 180:192-212.
33. Krug, R. M., M. Shaw, B. Broni, G. Shapiro, and O. Haller. 1985. Inhibition of influenza viral mRNA synthesis in cells expressing the interferon-induced Mx gene product. J. Virol. 56:201-206.
34. Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (London) 227:680-685.
35. Lai, C.-J., R. Men, M. Pethel, and M. Bray. 1992. Infectious RNA transcribed from stably cloned full-length cDNA: construction of growth-restricted dengue virus mutants, p. 265-270. In F. Brown, R. M. Chanock, H. S. Ginsberg, and R. A. Lerner (ed.), Vaccine 92. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
36. Landers, T. A., T. Blumenthal, and K. Weber. 1974. Function and structure in ribonucleic acid phage Qβ ribonucleic acid replicase. J. Biol. Chem. 249:5801-5808.
37. Leopardi, R., V. Hukkanen, R. Vainionpää, and A. A. Salmi. 1993. Cell proteins bind to sites within the 3' noncoding region of the positive-strand leader sequence of measles virus RNA. J. Virol. 67:785-790.
38. Lindenmann, J. 1964. Inheritance of resistance to influenza virus in mice. Proc. Soc. Exp. Biol. 116:506-509.
39. Lynch, C. J., and T. P. Hughes. 1936. The inheritance of susceptibility to yellow fever encephalitis in mice. Genetics 21:104-112.
40. Nakhasi, H. L., X. Q. Cao, T. A. Rouault, and T. Y. Lui. 1991 Specific binding of host cell proteins to the 3'-terminal stem-loop structure of rubella virus negative-strand RNA. J. Virol. 65:5961-5967.
41. Nakhasi, H. L., T. A. Rouault, D. J. Haile, T. Y. Lui, and R. D. Klausner. 1990. Specific high-affinity binding of host cell proteins to the 3' region of rubella virus RNA. New Biol. 2:255-264.
42. Pardigon, N., E. Lenches, and J. H. Strauss. 1993. Multiple binding sites for cellular proteins in the 3' end of Sindbis alphavirus minus-sense RNA. J. Virol. 67:5003-5011.
43. Pardigon, N., and J. H. Strauss. 1992. Cellular proteins bind to the 3' end of Sindbis virus minus-strand RNA. J. Virol. 66:1007-1015.
44. Pavlovic, J., O. Haller, and P. Staeheli. 1992. Human and mouse Mx proteins inhibit different steps of the influenza virus multiplication cycle. J. Virol. 66:2564-2569.
45. Pavlovic, J., T. Zürcher, O. Haller, and P. Staeheli. 1990. Resistance to influenza virus and vesicular stomatitis virus conferred by expression of human MxA protein. J. Virol. 64:3370-3375.
46. Pogue, G. P., X. Q. Cao, N. K. Singh, and H. L. Nakhasi. 1993. 5' sequences of rubella virus RNA stimulate translation of chimeric RNAs and specifically interact with two host-encoded proteins. J. Virol. 67:7106-7117.
47. Rice, C. M., E. M. Lenches, S. R. Eddy, S. J. Shin, R. L. Sheets, and J. H. Strauss. 1985. Nucleotide sequence of yellow fever virus: implications for flavivirus gene expression and evolution. Science 229:726-735.
48. Sabin, A. B. 1952. Genetic, hormonal, and age factors in natural resistance to certain viruses. Ann. N. Y. Acad. Sci. 54:936-944.
49. Sangster, M. Y., and G. R. Shellam. 1986. Genetically controlled resistance to flaviviruses within the house mouse complex of species. Curr. Top. Microbiol. Immunol. 127:313-318.
50. Sangster, M. Y., N. Urosevic, J. P. Mansfield, J. S. Mackenzie, and G. R. Shellam. 1994. Mapping the Flv locus controlling resistance to flaviviruses on mouse chromosome 5. J. Virol. 68:448-452.
51. Smith, A. L. 1981, Genetic resistance to lethal flavivirus encephalitis: effect of host age and immune status and route of inoculation on production of interfering Banzi virus in vitro. Am. J. Trop. Med. Hyg. 30:1319-1323.
52. Staeheli, P., R. J. Colonno, and Y.-S. E. Cheng. 1983. Different mRNAs induced by Interferon in cells from inbred mouse strains A/J and A2G. J. Virol. 47:563-567.
53. Slaeheli, P., O. Haller, W. Boll, J. Lindenmann, and C. Weissmann. 1986. Mx protein: constitutive expression in 3T3 cells transformed with cloned Mx cDNA confers selective resistance to influenza virus. Cell 44:147-158.
54. Staeheli, P., F. Pitossi, and J. Pavlovic. 1993. Mx proteins: GTPases with antiviral activity. Trends Cell Biol. 31:268-272.
55. Stollar, V., R. W. Schlesinger, and T. M. Stevens. 1967. Studies on the nature of dengue viruses. III. RNA synthesis in cells infected with type 2 dengue virus. Virology 33:650-658.
56. Szewczak, A. A., and P. B. Moore. 1995. The sarcin/ricin loop, a modular RNA. J. Mol. Biol. 247:81-98.
57. Todd, S., J. H. Nguyen, and B. L. Semler. 1995. RNA-protein interaction directed by the 3' end of human rhinovirus genomic RNA. J. Virol. 69:3605-3614.
58. Vaheri, A., W. D. Sedwick, S. A. Plotkin, and R. Maes. 1965. Cytopathic effect of rubella virus in BHK-21 cells and growth to high titers in suspension cultures. Virology 27:239-241.
59. Vainio, T. 1963. Virus and hereditary resistance in vitro. 1. Behavior of West Nile (E-101) virus in the cultures prepared from genetically resistant and susceptible strains of mice. Ann. Med. Exp. Biol. Fenn. 41:1-24.
60. Vainio, T., R. Gavatkin, and H. Koprowski. 1961. Production of interferon by brains of genetically resistant and susceptible mice infected with West Nilevirus. Virology 14:385-387.
61. Webster, L. T. 1923. Microbic virulence and host susceptibility in mouse typhoid infection. J. Exp. Med. 37:231-244.
62. Webster, L. T. 1937. Inheritance of resistance of mice to enteric bacterial and neurotropic virus infections. J. Exp. Med. 65:261-286.
63. Weiser, W., I. Vellisto, and F. B. Bang. 1976. Congenic strains of mice susceptible and resistant to mouse hepatitis virus. Proc. Soc. Exp. Biol. Med. 152:499-502.
64. Wimberly, B., G. Varani, and I. Tinoco, Jr. 1993. The conformation of loop E of eukaryotic SS ribosomal RNA. Biochemistry 32:1078-1087.
65. Zuo, E. T., F. A. Tanious, W. D. Wilson, G. Zon, G. S. Tan, and R. M. Wartell. 1990. Effect of base-pair sequence on the conformations and thermally induced transitions in oligodeoxyribonucleotides containing only AT base pairs. Biochemistry 29:4446-4456.