ESSA: An integrated and interactive computer tool for analysing RNA secondary structure

Nucleic Acids Research

Volumn 25, Issue 17, 1997, Pages 3514-3522

  Chetouani, F ^a   Monestie P ^b   Thebault P ^a   Gaspin, C ^b   Michot, B ^a  

^a Université Paul Sabatier   (France)

^b CEMAGREF   (France)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; RIBOSOME RNA; RNA;

ARTICLE; CALCULATION; COMPUTER PROGRAM; CONTROLLED STUDY; MOLECULAR MODEL; PRIORITY JOURNAL; RNA SEQUENCE; RNA STRUCTURE; THERMODYNAMICS;

BASE COMPOSITION; BASE SEQUENCE; CONSENSUS SEQUENCE; DATABASES, FACTUAL; DRUG STABILITY; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RNA; RNA, RIBOSOMAL; SOFTWARE; THERMODYNAMICS;

EID: 0030789737     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/25.17.3514     Document Type: Article

References (42)

1. Jaeger, L., Michel, F. and Westhof, E. (1996) Nucleic Acids Mol. Biol., 10, 33-51.
2. Ehresmann, B., Ehresmann, C., Romby, P., Mougel, M., Baudin, F., Westhof, E. and Ebel, J.P. (1990) Hill, W.E., Dahlberg, A., Garrett, R.A., Moore, B., Schlessinger, D. and Warner, J.R. (eds), The Ribosome, Structure, Function and Evolution. American Society for Microbiology, Washington DC, pp. 148-159.
3. Kolchanov, N.A. Titov, I.I., Vlassova, E. and Vlassov, V.V. (1996) Prog. Nucleic Acids Res. Mol. Biol., 53, 133-191.
4. Zuker, M. (1989) Science, 244, 48-52.
5. Woese, C.R. and Pace, N.R. (1993) in Gesteland, R.F. and Atkins, J.F. (eds) The RNA World, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 91-117.
6. Gutell, R.R. (1993) Curr. Biol., 3, 313-322.
7. Westhof, E. and Michel, F. (1994) in Nagai, k. and Mattaj, I.W. (eds), RNA-Protein Interactions. Oxford University Press, pp. 25-51.
8. Major, F., Turcotte, M., Gautheret, D., Lapalme, G., Fillion, E. and Cedergren, R. (1991) Science, 253, 1255-1260.
9. Gaspin, C. and Westhof, E. (1995) J. Mol. Biol., 254, 163-174.
10. Gouy, M. (1987) in Bishop, M.J. and Rawlings, C.J. (eds), Nucleic Acid and Protein Sequence Analysis, A Practical Approach. IRL Press, Oxford, Washington DC, pp. 259-284.
11. McCaskill, J. (1990) Biopolymers, 29, 1105-1119.
12. Jaeger, J.A., Tumer, D.H. and Zuker, M. (1990) Methods Enzymol., 183, 281-305.
13. Muller, G., Gaspin, C., Etienne, A. and Westhof, E. (1993) Comput. Applic. Biosci., 9, 551-561.
14. Perochon-Dorisse, J., Chetouani, F., Aurel, S., Iscolo, N. and Michot, B. (1995) Comput. Applic. Biosci., 11, 101-109.
15. Chiu, D.K.Y. and Kolodziejczac, T. (1991) Comput. Applic. Biosci., 7, 347-352.
16. Gutell, R.R., Power, A., Hertz, G.Z., Putz, E.J. and Stormo, G.D. (1992) Nucleic Acids Res., 20, 5785-5795.
17. Gautheret, D., Damberger, S.H. and Gutell, R.R. (1995) J. Mol. Biol., 248, 27-43.
18. Maidak, B.L., Olsen, G.J., Larsen, N., Overbeek, R.O., McCaughey, M.J. and Woese, C.R. (1997) Nucleic Acids Res., 25, 109-110.
19. DeRijk, P., Van de Peer, Y. and De Wachter, R. (1997) Nucleic Acids Res., 25, 117-122
20. Devereux, J., Haeberli, P. and Smithies, O. (1984) Nucleic Acids Res., 12, 387-395.
21. Matzura, O. and Wennborg, A. (1996) Comput. Applic. Biosci., 12, 247-249.
22. Costa, M. and Michel, F. (1995) EMBO J., 14, 1276-1285.
23. Philippe, C., Bénard, L., Portier, C., Westhof, E., Ereshmann, B. and Ehresmann, C. (1995) Nucleic Acids Res., 23, 18-28.
24. Corpet, F. and Michot, B. (1994) Comput. Applic. Biosci., 10, 389-399.
25. Hassouna, N., Michot, B. and Bachellerie, J.P. (1984) Nucleic Acids Res., 12, 3563-3583.
26. Cate, J.H., Gooding, A.R., Podell, E., Zhou, K., Golden, B.L., Kundrot, C.E., Cech, T.R. and Doudna, J.A. (1996) Science, 273, 1678-1696.
27. Nicoloso, M., Qu, L.H., Michot, B. and Bachellerie, J.P. (1996) J. Mol. Biol., 260, 178-195.
28. Kiss-Laszlo, Z., Henry, H., Bachellerie, J.P., Caizergues-Ferrer, M. and Kiss, T. (1996) Cell, 85, 1077-1088.
29. Cavaillé, J., Nicoloso, M. and Bachellerie, J.P. (1996) Nature, 383, 732-735.
30. Dandekar, T. and Hentze, M.W. (1995) Trends Genet., 11, 45-50.
31. Billoud, B., Kontic, M. and Viari, A. (1996) Nucleic Acids Res., 24, 1395-1403.
32. Chevalet, C. and Michot, B. (1992) Comput. Applic. Biosci., 8, 215-225.
33. Costa, M., Deme, E., Jacquier, A. and Michel, F. (1997) J. Mol. Biol., 267, 520-536.
34. Tanner, M.A. and Cech, T.R. (1995) RNA, 1, 349-350.
35. Vester, B. and Garrett, R.A. (1984) J. Mol. Biol., 179, 431-452.
36. Egebjerg, J., Christiansen, J. and Garrett, R.A. (1991) J. Mol. Biol., 222, 251-264.
37. Costa, M. and Michel, F. (1997) EMBO J., 16, 3289-3302.
38. Turner, D.H., Sugimoto, N. and Freier, S.M. (1988) Annu. Rev. Biophys. Chem., 17, 167-192.
39. Antao, V.P. and Tinoco, I. (1992) Nucleic Acids Res., 20, 819-824.
40. Gutell, R.R. (1996) in Zimmermann, R.A. and Dahlberg, A.E. (eds), Ribosomal RNA: Structure, Evolution, Processing and Function in Protein Biosynthesis. CRC Press, Boca Raton, Florida, pp. 111-128.
41. Michel, F. and Costa, M. (1997) RNA Structure and Function. Cold Spring Harbour Laboratory Press, Cold Spring Harbor, NY, in press.
42. Westhof, E., Masquida, B. and Jaeger, L. (1996) Folding Des., 1, R78-R88.