Detection of stable pre-rRNA in toxigenic Pseudo-nitzschia species

Applied and Environmental Microbiology

Volumn 63, Issue 12, 1997, Pages 4859-4865

  Cangelosi, Gerard A ^a,c   Hamlin, April M ^a   Marin III, Roman ^b   Scholin, Christopher A ^b  

^a UNIVERSITY OF WASHINGTON   (United States)

^b MONTEREY BAY AQUARIUM RESEARCH INSTITUTE   (United States)

^c SEATTLE BIOMEDICAL RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA; RIBOSOME RNA;

ARTICLE; DIATOM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYTOPLANKTON; POLYMERASE CHAIN REACTION; PSEUDONITZSCHIA; PSEUDONITZSCHIA AUSTRALIS; PSEUDONITZSCHIA MULTISERIES; PSEUDONITZSCHIA PUNGES; RNA ANALYSIS; TAXONOMY;

BACILLARIOPHYTA; EUKARYOTA; NITZSCHIA; NITZSCHIA ALBA; PROKARYOTA; PSEUDO-NITZSCHIA; PSEUDO-NITZSCHIA AUSTRALIS; PSEUDO-NITZSCHIA MULTISERIES;

EID: 0030781132     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.63.12.4859-4865.1997     Document Type: Article

References (43)

1. Adachi, M., Y. Sako, and Y. Ishida. 1904. Restriction fragment length polymorphism of ribosomal DNA internal transcribed spacer and 5.8S regions in Japanese Alexandrium species (Dinophyceae). J. Phycol. 30:857-863.
2. Adachi, M., Y. Sako, and Y. Ishida. 1996. Identification of the toxic dinoflagellates Alexandrium catenella and A. tamarense (Dinophyceae) using DNA probes and whole-cell hybridization. J. Phycol. 32:1049-1052.
3. Baroin, A., R. Perasso, L.-H. Qu, G. Brugerolle, J.-P. Bachellerie, and A. Adoutte. 1988. Partial phylogeny of the unicellular eukaryotes based on rapid sequencing of a portion of 28S ribosomal RNA. Proc. Natl. Acad. Sci. USA 85:3474-3478.
4. Bates, S. S., C. J. Bird, A. S. W. de Freitas, R. Foxall, M. Gilgan, et al. 1989. Pennate diatom Nitzschia pungens as the primary source of domoic acid, a toxin in shellfish from eastern Prince Edward Island, Canada. Can. J. Fish. Aquat. Sci. 46:1203-1215.
5. Cangelosi, G. A., and W. H. Brabant. 1997. Depletion of pre-16S rRNA in starved Escherichia coli cells. J. Bacteriol. 179:4457-4463.
6. Cangelosi, G. A., W. H. Brabant, T. B. Britschgi, and C. K. Wallis. 1996. Detection of rifampin- and ciprofloxacin-resistant Mycobacterium tuberculosis by using species-specific assays for precursor rRNA. Antimicrob. Agents Chemother. 40:1790-1795.
7. Douglas, D. J., and S. S. Bates. 1992. Production of domoic acid, a neurotoxic amino acid, by an axenic culture of the marine diatom Nitzschia pungens f. multiseries Hasle. Can. J. Fish. Aquat. Sci. 49:85-90.
8. Dudov, K. P., and M. D. Dabeva. 1983. Post-transcriptional regulation of ribosome formation in the nucleus of regenerating rat liver. Biochem. J. 210:183-192.
9. Eckert, W. A., and W. Kaffenberger. 1980. Regulation of rRNA metabolism in Tetrahymena pyrifromis. I. Nutritional shift-down. Eur. J. Cell Biol. 21:53-62.
10. Eichler, D. C., and N. Craig. 1994. Processing of eukaryotic ribosomal RNA. Prog. Nucleic Acid Res. Mol. Biol. 49:197-239.
11. Frothingham, R., and K. H. Wilson. 1993. Sequence-based differentiation of strains in the Mycobacterium avium complex. J. Bacteriol. 173:2818-2825.
12. Garrison, D. L., S. M. Conrad, P. P. Eilers, and E. M. Waldron. 1992. Confirmation of domoic acid production by Pseudonitzschia australis (Bacillariophyceae) in culture. J. Phycol. 28:604-607.
13. Guillard, R. R. L. 1975. Culture of phytoplankton for feeding marine invertebrate animals, p. 29-60. In W. L. Smith and M. H. Chanley (ed.), Culture of marine invertebrate animals. Plenum Press, New York, N.Y.
14. Gurtler, V. and V. A. Stanisich. 1996. New approaches to typing and identification of bacteria using the 16S-23S spacer region. Microbiology 142:3-16.
15. Hallegraeff, G. M. 1993. A review of harmful algal blooms and their apparent global increase. Phycologia 32:79-99.
16. Hallegraeff, G. M. 1994. Species of the diatom genus Pseudonitzschia in Australian waters. Bot. Mar. 37:397-411.
17. Hasle, G. R. 1965. Nitzschia and Fragilariopsis species studied in the light and electron microscopes. II. The group Pseudonitzschia. Skr. Nor. Vidensk.-Akad. Oslo 18:1-48.
18. Hasle, G. R. 1993. Nomenclature notes on marine planktonic diatoms. The family Bacillariaceae. Nova Hedwigia 106:315-321.
19. Hasle, G. R. 1994. Pseudo-nitzschia as a genus distinct from Nitzschia (Bacillariophyceae). J. Phycol. 30:1036-1039.
20. Horner, R. Personal communication.
21. Horner, R. A., and J. R. Postel. 1993. Toxic diatoms in western Washington waters (U.S. West Coast). Hydrobiologia 269/270:197-205.
22. Ji, Y., M. J. Colston, and R. A. Cox. 1994. Nucleotide sequence and secondary structure of precursor 16S rRNA of slow-growing mycobacteria. Microbiology 140:123-132.
23. Larson, D. E., P. Zahradka, and B. H. Sells. 1991. Control points in eukaryotic ribosome biogenesis. Biochem. Cell Biol. 69:5-22.
24. Lundholm, N., J. Skov, R. Pocklington, and Ø. Moestrup. 1994. Domoic acid, the toxic amino acid responsible for amnesic shellfish poisoning, now in Pseudonitzschia seriata (Bacillariophyceae) in Europe. Phycologia 33:475-478.
25. Manhart, J. R., G. A. Fryxell, M. C. Villac, and L. Y. Segura. 1995. Pseudonitzschia pungens and P. multiseries (Bacillariophyceac) nuclear ribosomal DNAs and species differences. J. Phycol. 31:421-427.
26. Martin, J. L., K. Haya, L. E. Burridge, and D. J. Wildish. 1990. Nitzschia pseudodelicatissima - a source of domoic acid in the Bay of Fundy, eastern Canada. Mar. Ecol. Prog. Ser. 67:177-182.
27. Miller, P. E., and C. A. Scholin. 1996. Identification of cultured Pseudonitzschia (Bacillariophyceae) using species-specific LSU rRNA-targeted fluorescent probes. J. Phycol. 32:646-655.
28. Moncla, B. J., P. Braham, K. Dix, S. Watanabe, and D. Schwartz. 1990. Use of synthetic oligonucleotide DNA probes for the identification of Bacteroides gingivalis. J. Clin. Microbiol. 28:324-327.
29. Musters, W., R. J. Planta, H. van Heerikhuizen, and H. A. Raué. 1990. Functional analysis of the transcribed spacers of Saccharomyces cerevisiae ribosomal DNA: it takes a precursor to form a ribosome, p. 435-442. In W. E. Hill, A. Dahlberg, R. A. Garrett, P. B. Moore, D. Schlessinger, and J. R. Warner (ed.), The ribosome: structure, function, and evolution. American Society for Microbiology, Washington, D.C.
30. Ochman, H., A. S. Gerber, and D. L. Hartl. 1988. Genetic applications of an inverse polymerase chain reaction. Genetics 120:621-623.
31. Pearson, W. R., and D. J. Lipman. 1988. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85:2444-2448.
32. Perl, T. M., L. Bedard, T. Kosatsky, J. C. Kockin, E. C. D. Todd, and R. S. Remis. 1990. An outbreak of toxic encephalopathy caused by eating mussels contaminated with domoic acid. N. Engl. J. Med. 322:1775-1778.
33. Rhodes, L., D. White, M. Syhre, and M. Atkinson. 1996. Pseudo-nitzschia species isolated from New Zealand coastal waters: domoic acid production in vitro and links with shellfish toxicity, p. 155-158. In T. Yasumoto, Y. Oshima, and Y. Fukuyo (ed.), Harmful and toxic algal blooms. Intergovernmental Oceanographic Commission, United Nations Educational, Scientific, and Cultural Organization, New York, N.Y.
34. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed., book 3. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
35. Scholin, C. A., K. R. Buck, T. B. Britschgi, G. A. Cangelosi, and F. P. Chavez. 1996. Identification of Pseudo-nitzschia australis using rRNA-targeted probes in whole cell and sandwich hybridization formats. Phycologia 35:190-197.
36. Scholin, C. A., M. C. Villac, K. R. Buck, J. M. Krupp, D. A. Powers, G. A. Fryxell, and F. P. Chavez. 1994. Ribosomal RNA sequences discriminate among toxic and nontoxic Pseudo-nitzschia species. Nat. Toxins 2:152-165.
37. Smith, J. C., K. Pauley, P. Cormier, R. Angus, P. Odense, D. O'Neil, M. A. Quilliam, and J. Worms. 1991. Population dynamics and toxicity of various species of Dinophysis and Nitzschia from the southern Gulf of St. Lawrence. Can. Tech. Rep. Fish. Aquat. Sci. 1799:25.
38. Sollner-Webb, B., and E. B. Mougey. 1991. News from the nucleolus: rRNA gene expression. Trends Biol. Sci. 16:58-62.
39. Srivastava, A. K., and D. Schlessinger. 1990. rRNA processing in Escherichia coli, p. 426-434. In W. E. Hill, A. Dahlberg, R. A. Garrett, P. B. Moore, D. Schlessinger, and J. R. Warner (ed.), The ribosome: structure, function, and evolution. American Society for Microbiology, Washington, D.C.
40. Todd, E. C. D. 1993. Domoic acid and amnesic shellfish poisoning - a review. J. Food Prot. 56:69-83.
41. Villac, M. C., D. L. Roelke, F. P. Chavez, L. A. Cifuentes, and G. A. Fryxell. 1993. Pseudonitzschia australis Frenguelli and related species from the west coast of the USA: occurrence and domoic acid production. J. Shellfish Res. 12:457-465.
42. Woods Hole Oceanographic Institute. 1995. ECOHAB: the ecology and oceanography of harmful algal blooms - a national research agenda. Woods Hole Oceanographic Institute, Woods Hole, Mass.
43. Zechman, F. W., E. A. Zimmer, and E. C. Theriot. 1994. Use of ribosomal DNA internal transcribed spacers for phylogenetic studies on diatoms. J. Phycol. 30:507-512.