Identification of Pseudo-nitzschia australis (Bacillariophyceae) using rRNA-targeted probes in whole cell and sandwich hybridization formats

Phycologia

Volumn 35, Issue 3, 1996, Pages 190-197

  Scholin, C A ^a   Buck, K R ^a   Britschgi, T ^b   Cangelosi, G ^c   Chavez, F P ^a  

^a MONTEREY BAY AQUARIUM RESEARCH INSTITUTE   (United States)

^b Darwin Molecular Corporation   (United States)

^c Nanogen Inc USA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0000397393     PISSN: 00318884     EISSN: None     Source Type: Journal    
DOI: 10.2216/i0031-8884-35-3-190.1     Document Type: Article

References (52)

1. AMANN R.I., BINDER B.J., OLSON R.J., CHISHOLM S.W., DEVEREUX R. & STAHL D.A. 1990. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Applied and Environmental Microbiology 56: 1919-1925.
2. AMANN R.I., LUDWIG W. & SCHLEIFER K-H. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiological Reviews 59: 143-169.
3. AMANN R., ZARDA B., TREBESIUS K.H., LUDWIG W. & SCHLEIFER K-H. 1994. Rapid identification of micro-organisms using fluorescent rRNA-targeted oligonucleotides. In: Rapid Methods and Automation in Microbiology and Immunology (Ed. by R.C. Spencer, E.P. Wright & S.W.B Newsom), pp. 237-244. Intercept, Ltd, Andover, U.K.
4. ANDERSON D.M. 1995. Identification of harmful algal species using molecular probes: an emerging perspective. In: Harmful Marine Algal Blooms (Ed. by P. Lassus, G. Arzul, E. Erard, P. Gentien & C. Marcaillou), pp. 3-13. Lavoisier Publishing, Inc., Paris.
5. ANDERSON D.M., GALLOWAY S.B. & JOSEPH J.D. (Eds). 1993. Marine Biotoxins and Harmful Algae: A National Plan. Woods Hole Oceanographic Institution Technical Report, WHOI 93-02. 44 pp.
6. ANONYMOUS 1991. Domoic acid found in Oregon and Washington shellfish. Communicable Diseases Summary, Oregon Health Division, Portland 40: 1-2.
7. BATES S.S., BIRD C.J., BOYD R.K., DE FREITAS A.S.W., FOXALL R. & GILGAN M.W. 1989. Pennate diatom Nitzschia pungens as the primary source of domoic acid, a toxin in shellfish from eastern Prince Edward Island, Canada. Canadian Journal of Fisheries and Aquatic Science 46: 1203-1215.
8. BATES S.S., DE FREITAS A.S.W., MILEY J.E., POCKLINGTON R., QUILLIAM M.A., SMITH J.C. & WORMS J.C. 1991. Controls on domoic acid production by the diatom Nitzschia pungens f. multiseries in culture: nutrients and irradiance. Canadian Journal of Fisheries and Aquatic Science 48: 1136-1144.
9. BATES S.S. & DOUGLAS DJ. 1993. Laboratory studies of domoic acid production by Pseudonitzschia pungens. The Intergovernmental Oceanographic Commission of UNESCO, Harmful Algae News No. 6, p. 6.
10. BATES S.S., DOUGLAS D.J., DOUCETTE G.J. & LEGER C. 1995. Effects of reintroducing bacteria on domoic acid production by axenic cultures of the diatom Pseudonitzschia pungens f. multiseries. In: Harmful Marine Algal Blooms (Ed. by P. Lassus, G. Arzul, E. Erard, P. Gentien & C. Marcaillou), pp. 401-406. Lavoisier Publishing, Inc., Paris.
11. BATES S.S., LEGER C., KEAFER B.A. & ANDERSON D.M. 1993. Discrimination between domoic acid-producing and non-toxic forms of the diatom, Pseudonitzschia pungens, using immunofluorescence. Marine Ecological Progress Series 100: 185-195.
12. BOLIN R.L. & ABBOTT D.P. 1963. Studies on the marine climate and phytoplankton of the central coastal areas of California, 1954-1960. California Cooperative Oceanic Fisheries Investigative Reports 9: 23-45.
13. BRISELDEN A.M. & HILLIER S.L. 1994. Evaluation of Affirm VP microbial identification test for Gardnerella vaginalis and Trichomonas vaginalis. Journal of Clinical Microbiology 32: 148-152.
14. BUCK K.R., UTTAL-COOKE L., PILSKALN C.H., ROELKE D.L., VILLAC M.C., FRYXELL G.A., CIFUENTES L.A. & CHAVEZ EP. 1992. Autecology of Pseudonitzschia australis Frenguelli, a suspected domoic acid producer from Monterey Bay, California. Marine Ecological Progress Series 84: 293-302.
15. DELONG E.F. & WARD B.B. 1992. Biological oceanography from a molecular perspective. Oceanus 35 (3): 47-54.
16. DELONG E.F., WICKHAM G.S. & PACE N.R. 1989. Phylogenetic stains: ribosomal RNA-based probes for the identification of single cells. Science, Washington, D.C. 243: 1360-1363.
17. DE RIJK P., VAN DE PEER Y., CHAPELLE S. & DE WACHTER R. 1994. Database on the structure of large ribosomal subunit RNA. Nucleic Acids Research 22: 3495-3501.
18. DOUGLAS D.J., LANDRY D. & DOUGLAS S.E. 1994. Genetic relatedness of toxic and nontoxic isolates of the marine pennate diatom Pseudonitzschia (Bacillariophyceae): phylogenetic analysis of 18S rRNA sequences. Natural Toxins 2: 166-174.
19. EMBLEY T.M., FINLAY B.J., THOMAS R.H. & DYAL P.L. 1992. The use of rRNA sequences and fluoresecent probes to investigate the phylogenetic positions of the anaerobic ciliate Metopus palaeformis and its archaeobacterial endosymbiont. Journal of General Microbiology 138: 1479-1487.
20. FIELD K.G., OLSEN G.J., LANE D.J., GIOVANNONI S.J., GHISELIN M.T., RAFF E.C., PACE N.R. & RAFF R.A. 1988. Molecular phylogeny of the animal kingdom. Science, Washington, D.C. 239: 748-753.
21. FRITZ L., QUILLIAM M.A., WRIGHT J.L.C., BEALE A.M. & WORK T.M. 1992. An outbreak of domoic acid attributed to the pennate diatom Pseudonitzschia australis. Journal of Phycology 28: 439-442.
22. GARRISON D.L., CONRAD S.M., EILERS P.P. & WALDRON E.M. 1992. Confirmation of domoic acid production by Pseudonitzschia australis (Bacillariophyceae) in culture. Journal of Phycology 28: 604-607.
23. GIOVANNONI S.J., DELONG E.F., OLSEN G.J. & PACE N.R. 1988. Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells. Journal of Bacteriology 170: 720-726.
24. GUILLARD R.R.L. 1973. Division rates. In: Handbook of Phycological Methods - Culture Methods and Growth Measurements (Ed. by J.R. Stein), pp. 289-311. Cambridge University Press, Cambridge, England.
25. HALLEGRAEFF G.M. 1993. A review of harmful algal blooms and their apparent global increase. Phycologia 32: 79-99.
26. HALLEGRAEFF G.M. 1994. Species of the diatom genus Pseudonitzschia in Australian waters. Botanica Marina 37: 397-411.
27. HASLE G.R. 1965. Nitzschia and Fragilariopsis species studied in the light and electron microscopes. II. The group Pseudonitzschia. Skrifter utgin av Det Norske Videnskaps-Akademi i Oslo 18: 1-45.
28. HASLE G.R. 1972. The distribution of Nitzschia seriata Cleve and allied species. Nova Hedwigia, Beiheft 39: 171-190.
29. HASLE G.R. 1993. Nomenclature notes on marine planktonic diatoms. The family Bacillariaceae. Nova Hedwigia, Beiheft 106: 315-321.
30. HASLE G.R. 1994. Pseudo-nitzschia as a genus distinct from Nitzschia (Bacillariophyceae). Journal of Phycology 30: 1036-1039.
31. HASLE G.R. & FRYXELL G.A. 1970. Diatom cleaning and mounting for light and electron microscopy. Transactions of the American Microscopy Society 89: 460-474.
32. HORNER R.A. & POSTEL J.R. 1993. Toxic diatoms in western Washington waters (U.S. west coast). Hydrobiologia 269/270: 197-205.
33. LUDWIG W., DORN S., SPRINGER N., KIRCHOF G. & SCHLEIFER K-H. 1994. PCR-based preparation of 23S rRNA-targeted group-specific polynucleotide probes. Applied and Environmental Microbiology 60: 3236-3244.
34. LUNDHOLM N., SKOV J., POCKLINGTON R. & MOESTRUP Ø. 1994. Domoic acid, the toxic amino acid responsible for amnesic shellfish poisoning, now in Pseudonitzschia seriata (Bacillariophyceae) in Europe. Phycologia 33: 475-478.
35. MAIDAK B.L., LARSEN N., MC CAUGHEY M.J., OVERBEEK R., OLSEN G.J., FOGEL K., BLANDY J. & WOESE C.R. 1994. The ribosomal database project. Nucleic Acids Research 22: 3485-3487.
36. MARTIN J.L., HAYA K., BURRIDGE L.E. & WILDISH D.J. 1990. Nitzschia pseudodelicatissima - a source of domoic acid in the Bay of Fundy, eastern Canada. Marine Ecology Progress Series 67: 177-182.
37. SCHOLIN C.A., HERZOG M., SOGIN M.L. & ANDERSON D.M. 1994a. Identification of group and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae). II. Sequence analysis of a fragment of the LSU rRNA gene. Journal of Phycology 30: 999-1011.
38. SCHOLIN C.A., VILLAC M.C., BUCK K.R., KRUPP J.M., POWERS D.A., FRYXELL G.A. & CHAVEZ F.P. 1994b. Ribosomal DNA sequences discriminate among toxic and non-toxic Pseudonitzschia species. Natural Toxins 2: 152-165.
39. SMITH J.C., PAULEY K., CORMIER P., ANGUS R., ODENSE P., O'NEIL D., QUILLIAM M.A. & WORMS J. 1991. Population dynamics and toxicity of various species of Dinophysis and Nitzschia from the southern Gulf of St. Lawrence. In: Proceedings of the Second Canadian Workshop on Harmful Marine Algae (Ed. by D.C. Gordon, Jr). Canadian Technical Reports on Fisheries and Aquatic Sciences 1799: 25.
40. SOGIN M.L. & GUNDERSON J.H. 1987. Structural diversity of eukaryotic small subunit ribosomal RNAs: evolutionary implications. Endocytobiology III. Annals of the New York Academy of Science 503: 125-139.
41. TODD E.C.D. 1993. Domoic acid and amnesic shellfish poisoning - a review. Journal of Food Protection 56: 69-83.
42. VAHERI A., TILTON R.C. & BALOWS A. (EDS). 1991. Rapid Methods and Automation in Microbiology and Immunology. Springer-Verlag, New York. 573 pp.
43. VAN DE PEER Y., VAN DEN BROECK I., DE RIJK P. & DE WACHTER R. 1994. Database on the structure of small ribosomal subunit RNA. Nucleic Acids Research 22: 3488-3494.
44. VAN NESS J. & CHEN L. 1991. The use of oligonucleotide probes in chaotrope-based hybridization solutions. Nucleic Acids Research 19: 5143-5151.
45. VAN NESS J., KALBFLEISCH S., PETRIE C.R., REED M.W., TABONE J.C. & VERMEULEN M.J. 1991. A versatile solid support system for oligonucleotide probe-based hybridization assays. Nucleic Acids Research 19: 3345-3350.
46. VILLAC M.C., ROELKE D.L., CHAVEZ F.P., CIFUENTES L.A. & FRYXELL G.A. 1993a. Pseudonitzschia austral is Frenguelli and related species from the west coast of the USA:-occurrence and domoic acid production. Journal of Shellfish Research 12: 457-465.
47. VILLAC M.C., ROELKE D.L., VILLAREAL T.A. & FRYXELL G.A. 1993b. Comparison of two domoic acid producing diatoms: a review. Hydrobiologia 269/270: 213-224.
48. VILLAREAL T.A., ROELKE D.L. & FRYXELL G.A. 1994. Occurrence of the toxic diatom Nitzschia pungens f. multiseries in Massachusetts Bay, Massachusetts, U.S.A. Marine Environmental Research 37: 417-423.
49. WALZ P.M., GARRISON D.L., GRAHAM W.M., CATTEY M.A., TJEERDEMA R.S. & SILVER M.W. 1994. Domoic acid-producing diatom blooms in Monterey Bay, California: 1991-1993. Natural Toxins 2: 271-279.
50. WOESE C.R. & Fox G.F. 1977. Phylogenetic structure of the prokaryotic domains: the primary kingdoms. Proceedings of the National Academy of Science, U.S.A. 74: 5088-5090.
51. WOOD M. & SHAPIRO L. (EDS). 1993. Domoic Acid. Final Report of the Workshop, Oregon Institute of Marine Biology, February 21-23, 1992. ORESU -W-92-003-NOAA. 21 pp.
52. WORK T.M., BEALE A.M., FRITZ L., QUILLIAM M.A., SILVER M., BUCK K.R. & WRIGHT J.L.C. 1993. Domoic acid intoxication of brown pelicans (Pelecanus occidentalis) in California. In: Toxic Marine Phytoplankton (Ed. by E. Granéli, B. Sundström, L. Edler & D.M. Anderson), pp. 643-649. Elsevier, New York.