A phylogenetic analysis of Saccharomyces species by the sequence of 18S- 28S rRNA spacer regions

Yeast

Volumn 13, Issue 13, 1997, Pages 1243-1250

  Oda, Yuji ^a   Yabuki, Mihe ^a   Tonomura, Kenzo ^a   Fukunaga, Masahito ^a  

^a FUKUYAMA UNIVERSITY   (Japan)

Author keywords

Phylogeny; Ribosomal RNA; Saccharomyces; Systematics

Indexed keywords

RIBOSOME RNA; RNA 18S; RNA 28S;

ARTICLE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; YEAST;

DNA, FUNGAL; DNA, RIBOSOMAL; EVOLUTION, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; SACCHAROMYCES; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

SACCHAROMYCES; SACCHAROMYCES BAYANUS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES EXIGUUS; SACCHAROMYCES KLUYVERI; SACCHAROMYCES PARADOXUS; SACCHAROMYCES PASTORIANUS; SACCHAROMYCES SERVAZZII; SACCHAROMYCES SPENCERORUM; SACCHAROMYCES UNISPORUS;

EID: 0030727350     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0061(199710)13:13<1243::AID-YEA173>3.0.CO;2-D     Document Type: Article

References (33)

1. Ando, S., Mikata, K., Tahara, Y. and Yamada, Y. (1996). Phylogenetic relationships of species of the genus Saccharomyces Meyen ex Reess (Saccharomycetaceae) deduced from partial base sequences of 18S and 26S ribosomal RNAs. Biosci. Biotech. Biochem. 60, 1070-1075.
2. Barnett, J. A. (1992). The taxonomy of the genus Saccharomyces Meyen ex Reess: a short review for non-taxonomists. Yeast 8, 1-23.
3. Felsenstein, J. (1993). PHYLIP (Phylogenetic Inference Package) version 3.5c. Department of Genetics, University of Washington. Seattle.
4. Fukunaga, M. and Hamase, A. (1995). Outer surface protein C gene sequence analysis of Borrelia hurgdorferi sensu lato isolates of Japan. J. Clin. Microbiol. 33, 2415-2420.
5. Guillamón, J. M., Barri, E., Huerta, T. and Querol, A. (1994). Rapid characterization of four species of the Saccharomyces sensu stricto complex according to mitochondrial DNA patterns. Int. J. Syst. Bacteriol. 44, 708-714.
6. James, S. A., Collins, M. D. and Roberts, I. N. (1994). Genetic interrelationship among species of the genus Zygosaccharomyces as revealed by small-subunit rRNA gene sequences. Yeast 10, 871-881.
7. James, S. A., Collins, M. D. and Roberts, I. N. (1996). Use of an rRNA internal transcribed spacer region to distinguish phylogenetically closely related species of the genera Zygosaccharomyces and Torulaspora. Int. J. Syst. Bacteriol. 46, 189-194.
8. Kaneko, Y. and Banno, I. (1991). Reexamination of Saccharomyces bayanus strains by DNA-DNA hybridization and electrophoretic karyotypes. IFO Res. Comm. 15, 30-41.
9. Kurtzman, C. P. (1994). Molecular taxonomy of the yeasts. Yeast 10, 1727-1740.
10. Kurtzman, C. P. and Robnett, C. J. (1991). Phylogenetic relationships among species of Saccharomyces, Schizosaccharomyces, Debaryomyces and Schwanniomyces determined from partial ribosomal RNA sequences. Yeast 7, 61-72.
11. Lewicka, K., Mallie, M. and Bastide, J.-M. (1995). Genetic variability in the Saccharomyces sensu stricto complex revealed by mutilocus enzyme electrophoresis. Int. J. Syst. Bacteriol. 45, 538-543.
12. Masneuf, I., Aigle, M. and Dubourdieu, D. (1996). Development of a polymerase chain reaction/ restriction fragment length polymorphism method for Saccharomyces cerevisiae and Saccharomyces bayanus identification in ecology. FEMS Microhiol. Lett. 138, 239-244.
13. Molina, F. I., Inoue, T. and Jong, S. C. (1992a). Ribosomal DNA restriction analysis reveals genetic heterogeneity in Saccharomyces cerevisiae Meyen ex Hansen. Int. J. Syst. Bacterial. 42, 499-502.
14. Molina, F. I., Inoue, T. and Jong, S. C. (1992b). Restriction polymorphisms in the internal transcribed spacers and 5-8S rDNA of Saccharomyces. Curr. Microbiol. 25, 251-255.
15. Molnár, O., Messner, R., Prillinger, H., Stahl, U. and Slavikova, E. (1995). Genotypic identification of Saccharomyces species using random amplified polymorphic DNA analysis. System. Appl. Microbiol 18, 136-145.
16. Naumov, G. I., Naumova, E. S. and Korhola, M. (1995a). Karyotypic relationships among species of Saccharomyces sensu lato: S. castellii, S. dairensis, S. unisporus and S. servazzii. System. Appl. Microbiol. 18, 103-108.
17. Naumov, G. I., Saumova, E. S., Hagler, A. N., Mendonça-Hagler, L. C. and Louis, E. J. (1995b) A new genetically isolated population of the Saccharomyces sensu stricto complex from Brazil. Antonie van Leeuwenhoek 67, 351-355.
18. Oda, Y. and Tonomura, K. (1995). Electrophoretic karyotyping of the yeast genus Torulaspora. Lett. Appl. Microbiol. 21, 190-193.
19. Saitou, N. and Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 161-193.
20. Tornai-Lehoczki, J. and Dlauchy, D. (1996). An opportunity to distinguish species of Saccharomyces sensu stricto by electrophoretic separation of the larger chromosomes. Lett. Appl. Microbiol. 23, 227-230.
21. Tornai-Lehoczki, J., Dlauchy, D. and Deák, T. (1994). Significance of active fructose transport in the differentiation of the Saccharomyces sensu stricto group. Lett. Appl. Microbiol. 19, 173-176.
22. Valente, P., Gouveia, F. C., de Lemos, G. A., et al. (1996). PCR amplification of the rDNA internal transcribed spacer region for differentiation of Saccharomyces cultures. FEMS Microbiol. Lett. 137, 253-256.
23. Van Vuren, H. J. and Van der Meer, L. (1988). Characterization of brewing yeast strains by numerical analysis of total soluble cell protein patterns. J. Inst. Brew. 94, 245-248.
24. Vaughan-Martini, A. (1989). Saccharomyces paradoxus comb, nov., a newly separated species of the Saccharomyces sensu stricto complex based upon nDNA/ nDNA homologies. Antonie van Leeuwenhoek 68, 111-118.
25. Vaughan-Martini, A. (1995). Saccharomyces barnetti and Saccharomyces spencerorum: two new species of Saccharomyces sensu lato (van der Walt). System. Appl. Microbiol. 12, 179-182.
26. Vaughan-Martini, A. and Kurtzman, C. P. (1985). Deoxyribonucleic acid relatedness among species of the genus Saccharomyces. Int. J. Syst. Bacteriol. 35, 508-511.
27. Vaughan-Martini, A. and Kurtzman, C. P. (1988). Deoxyribonucleic acid relatedness among species of Saccharomyces sensu lato. Mycologia 80, 241-243.
28. Vaughan-Martini, A. and Martini, A. (1987). Three newly delimited species of Saccharomyces sensu stricto. Antonie van Leeuwenhoek 53, 77-84.
29. Vaughan-Martini, A. and Martini, A. (1993). A taxonomic key for the genus Saccharomyces. System. Appl. Microbiol. 16, 113-119.
30. Vaughan-Martini, A., Martini, A. and Cardinali, G. (1993). Electrophoretic karyotyping as a taxonomic tool in the genus Saccharomyces. Antonie van Leeuwenhoek 63, 145-156.
31. Woolford, J. L., Jr. and Warner, J. R. (1991). The ribosome and its synthesis. In Broach, J. R., Pringle, J. R. and Jones, E. W. (Eds), The Molecular and Cellular Biology of the yeast Saccharomyces: Genome Dynamics, Protein Synthesis, and Energetics. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, NY, pp. 587-626.
32. Yamada, Y., Kaneko, Y. and Mikata, K. (1990). Identification of 38 brewing yeasts maintained in IFO collection. Bull. JFCC 6, 76-85 (in Japanese).
33. Yamada, Y., Mikata, K. and Banno, I. (1993). Reidentification of 121 strains of the genus Saccharomyces. Bull. JFCC 9, 95-119. (in Japanese).