Crystal structure of 2'-O-Me(CGCGCG)2, an RNA duplex at 1.30 Å resolution. Hydration pattern of 2'-O-methylated RNA

Nucleic Acids Research

Volumn 25, Issue 22, 1997, Pages 4599-4607

  Adamiak, Dorota A ^a   Milecki, Jan ^b   Popenda, Mariusz ^a   Adamiak, Ryszard W ^a   Dauter, Zbigniew ^c   Rypniewski, Wojciech R ^c  

^a POLISH ACADEMY OF SCIENCES   (Poland)

^b ADAM MICKIEWICZ UNIVERSITY   (Poland)

^c EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DOUBLE STRANDED RNA; GUANINE; MAGNESIUM ION; WATER;

ARTICLE; CRYSTAL STRUCTURE; HYDRATION; HYDROGEN BOND; PRIORITY JOURNAL; RNA CONFORMATION; RNA METHYLATION; RNA STRUCTURE; SYNCHROTRON;

EID: 0030726858     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/25.22.4599     Document Type: Article

References (42)

1. Arnott,S., Hukins,D.W.L., Dover,S.D., Fuller,W. and Hodgson,AR. (1973) J. Moi. Biol.,81, 107-112.
2. Seeman,N.C., Rosenberg J.M., Suddath,F.L., Kim,J.P. and Rich,A. (1976) J. Mol. Biol., 104, 109-144.
3. Rosenberg,J.M., Seeman,N.C., Day,R.O. and Rich,A. (1976) J. Mol. Biol., 104, 145-167.
4. Holbrook,S.R., Sussman,J.L., Warrant,R.W. and Kim,S.H. (1978) J. Mol. Biol., 123, 631-660.
5. Hingerty,B., Brown,S.S. and Jack,A. (1978) J. Mol. Biol., 124, 523-534.
6. Usman,N., Ogilvie,K.K., Jiang,M-J. and Cedergren,R.J. (1987) J. Am. Chem. Soc., 109, 7845-7854.
7. Milligan,J.F., Groebe,D.R., Witherell,G.W. and Uhlenbeck,O.C. (1987) Nucleic Acids Res., 15, 8783-8798.
8. Dock-Bregeon,A.C., Chevrier,B., Podjamy,A., Moras,D., de Bear,J.S., Gough,G.R., Gilham,P.T and Johnson,J. (1988) Nature, 335, 375-378.
9. Holbrook,S.R., Cheong,C., Tinoco,I.Jr and Kim,S.A. (1991) Nature, 353, 579-581.
10. Leonard,G.A., McAuley-Hecht,K.E., Ebel,S., Lough,D.M., Brown,T. and Hunter,W.N. (1994) Structure, 2, 483-494.
11. Cruse,W., Saludjan,P., Biala,E., Strazewski,P., Prange,T. and Kennard,O. (1994) Proc. Natl. Acad. Sci. USA, 91, 4160-4164.
12. Betzel,C., Lorenz,S., Furste,J.P. Bald,R., Zhang,M., Schneider,T.R., Wuson,K.S. and Erdmann,V.A. (1994) FEBS Lett., 351, 159-164.
13. Baeyens,KJ., De Bondut,H.L. and Holbrook,S.R. (1995) Nature Struct. Biol., 2, 107-122.
14. Schindelin,H., Zhang,M., Bald,R., Furste,J-P. Erdmann,V.A. and Heinemann,U. (1995) J. Mol. Biol., 249, 595-603.
15. Lietzke,S.E., Bames,C.L., Berglund,J.A. and Kundrot,C.E. (1996) Structure, 4, 917-930.
16. Baeyens,K.J., De Bondt,H.L., Pardi,A. and Holbrook,S.R. (1996) Proc. Natl. Acad. Sci. USA, 93, 12851-12855.
17. Gate J.H., Gooding,A.R., Podell,E., Zhou,K., Golden,B.L., Kundrot,C.E., Cech,T.R. and Doudna,J.A. (1996) Science, 273, 1678-1685.
18. Pley,H.W., Flaherty,K.M. and McKay,D.B. (1994) Nature, 372, 68-74.
19. Scott,W.G., Murray,J.B., Arnold,J.R.P., Stoddard,B.L. and Klug,A. (1996) Science, 274, 2065-2069.
20. Hall,K., Cruz,P., Tinoco,I.Jr, Jovin,T.M. and Van de Sande,J.H. (1984) Nature, 311, 584-586.
21. Adamiak,R.W., Galat,A. and Skalski,B. (1985) Biochim. Biophys Acta, 825, 345-352.
22. Krzyzaniak,A., Barciszewski,J., Furste,J.P., Bald,R., Erdmann,V.A., Salanski,P. and Jurczak, J. (1994) Int. J. Biol. Macromol., 16, 159-162.
23. Krzyzaniak,A., Salanski,P., Adamiak,R.W., Jurczak,J. and Barciszewski,J. (1996) In Hayashi,R. and Balny,C. (eds). High Pressure Bioscience and Biotechnology. Eisevier Science, Amsterdam, pp. 189-194.
24. Wahl,M.C., Rao,S.T. and Sundaralingam,M. (1996) Nature Struct. Biol., 3, 24-31.
25. Egli,M., Portman,S. and Usman,N. (1996), Biochemistry, 35, 8489-8494.
26. Biala,E., Milecki,J., Kowalewski,A., Popenda,M., Antkowiak,W.Z. and Adamiak,R.W. (1993) Acta Biochim. Pol., 40, 1-7.
27. Otwinowski,Z. and Minor,W. (1997) In Carter,C.W. and Sweet,R.M. (eds), Methods in Enzymology. Academic Press, New York, Vol. 276, pp. 307-326.
28. Feigin,L.A. and Svergun,D.I. (1987) Structure Analysis by Small-Angle X-ray and Neutron Scattering. Plenum Press, New York, p. 120.
29. Navaza,J. (1994) Acta Crystallog. section A, 50, 157-163.
30. Collaborative Computational Project, Number 4 (1994) Acta Crystallog. section D, 50, 760-763.
31. Sheldrick, G.M. and Schneider,T. (1997) In Carter,W.W. and Sweet,R.M. (eds), Methods in Enzymology. Academic Press, New York, Vol. 277, pp. 319-343.
32. Jones,T.A. (1978) J. Appl Crystallog. 11, 268-272.
33. Lavery,R. and Sklenar,H. (1988) J. Biomol. Struct. Dyn., 6, 63-91.
34. Altona,C. (1983) Reel. Trav. Chim. Pays-Bas, 101, 413-433.
35. Saenger,W. (1984) Principles of Nucleic Acids Structure. Springer, Berlin, Heidelberg.
36. Chandraseknaran,R. and Amott,S. (1989) In Saenger,W. (ed.), Landolt-Bornstein, New Series, Group VII. Springer, Berlin, Vol. 1b, pp. 31-170.
37. Kennard,O., Cruse,W.B., Nachman,J., Prange,T., Shakked,Z. and Rabinowitch,D. (1986) J. Biomol. Struct. Dyn., 3, 623-627.
38. Saenger,W., Hunter,W.N. and Kennard O. (1986) Nature, 324, 385-388.
39. Westhof,E. (1987) Int. J. Biol. Macromol., 9, 186-192.
40. Liu,K., Cruzan,J.D. and Saykally,R.J. (1996) Science, 271, 929-933.
41. Neidle,S., Berman,H. and Shieh,H.S. (1980) Nature, 288, 129-133.
42. Lubini,P., Zurcher,W. and Egli,M. (1994) Chem. Biol., 1, 39-45.