메뉴 건너뛰기




Volumn 249, Issue 2, 1997, Pages 576-583

Design and NMR study of an immobile DNA four-way junction containing 38 nucleotides

Author keywords

1H NMR; Four way DNA junction; Holliday junction; Oligonucleotide

Indexed keywords

DNA FRAGMENT;

EID: 0030724102     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1432-1033.1997.00576.x     Document Type: Article
Times cited : (9)

References (35)
  • 1
    • 0012488874 scopus 로고
    • NMR data on oligonucleotides
    • (Saenger, W., ed.) Springer-Verlag, Berlin
    • Altona, C. (1990) NMR data on oligonucleotides, in Landolt-Börnstein New Series VII/Ic (Saenger, W., ed.) pp. 88-190, Springer-Verlag, Berlin.
    • (1990) Landolt-Börnstein New Series VII/Ic , pp. 88-190
    • Altona, C.1
  • 2
    • 0010991067 scopus 로고
    • Construction of a DNA four-way junction: Design and NMR spectroscopy
    • (Pullman, B. & Jortner, J., eds) Kluwer Academic Publishers, Dordrecht
    • Altona, C. & Pikkemaat, J. A. (1995) Construction of a DNA four-way junction: design and NMR spectroscopy, in Modelling of biomolecular structures und mechanisms (Pullman, B. & Jortner, J., eds) pp. 289-304, Kluwer Academic Publishers, Dordrecht.
    • (1995) Modelling of Biomolecular Structures und Mechanisms , pp. 289-304
    • Altona, C.1    Pikkemaat, J.A.2
  • 3
    • 0030575840 scopus 로고    scopus 로고
    • Classification of nucleic acid junctions
    • Altona, C. (1996) Classification of nucleic acid junctions, J. Mol. Biol. 263, 568-581.
    • (1996) J. Mol. Biol. , vol.263 , pp. 568-581
    • Altona, C.1
  • 4
    • 0342419507 scopus 로고    scopus 로고
    • Three- and four-way junctions in DNA: A conformational viewpoint
    • Altona, C., Pikkemaat, J. A. & Overmars, F. J. J. (1996) Three- and four-way junctions in DNA: a conformational viewpoint, Curr. Opin. Struct. Biol. 6, 305-316.
    • (1996) Curr. Opin. Struct. Biol. , vol.6 , pp. 305-316
    • Altona, C.1    Pikkemaat, J.A.2    Overmars, F.J.J.3
  • 5
    • 0029880329 scopus 로고    scopus 로고
    • Sequence dependence and direct measurement of crossover isomer distribution in model Holliday junctions using NMR spectroscopy
    • Carlström, G. & Chazin, W. J. (1996) Sequence dependence and direct measurement of crossover isomer distribution in model Holliday junctions using NMR spectroscopy. Biochemistry 35, 3534-3544.
    • (1996) Biochemistry , vol.35 , pp. 3534-3544
    • Carlström, G.1    Chazin, W.J.2
  • 6
    • 0024315085 scopus 로고
    • Quantification of DNA structure from NMR data: Conformation of d-ACATC-GATGT
    • Chary, K. V. R., Modi, S., Hosur, R. V. & Govil, G. (1989) Quantification of DNA structure from NMR data: conformation of d-ACATC-GATGT, Biochemistry 28, 5240-5249.
    • (1989) Biochemistry , vol.28 , pp. 5240-5249
    • Chary, K.V.R.1    Modi, S.2    Hosur, R.V.3    Govil, G.4
  • 7
    • 0028781380 scopus 로고
    • 1H NMR studies of immobile Holliday junctions: Nonlabile proton assignments and identification of crossover isomers
    • 1H NMR studies of immobile Holliday junctions: nonlabile proton assignments and identification of crossover isomers, Biochemistry 33, 11453-11459.
    • (1994) Biochemistry , vol.33 , pp. 11453-11459
    • Chen, S.-M.1    Chazin, W.J.2
  • 8
    • 0027339077 scopus 로고
    • 1H NMR studies of 32-base pair synthetic immobile Holliday junctions: Complete assignment of the labile protons and identification of the base pairing scheme
    • 1H NMR studies of 32-base pair synthetic immobile Holliday junctions: complete assignment of the labile protons and identification of the base pairing scheme. Biochemistry 32, 319-326.
    • (1993) Biochemistry , vol.32 , pp. 319-326
    • Chen, S.-M.1    Heffron, F.2    Chazin, W.J.3
  • 10
    • 0027976675 scopus 로고
    • Solution structure of the four-way DNA junction at low salt conditions: A fluorescence resonance energy transfer analysis
    • Clegg, R. M., Murchie, A. I. H. & Lilley, D. M. J. (1994) Solution structure of the four-way DNA junction at low salt conditions: a fluorescence resonance energy transfer analysis, Biophys. J. 66, 99-109.
    • (1994) Biophys. J. , vol.66 , pp. 99-109
    • Clegg, R.M.1    Murchie, A.I.H.2    Lilley, D.M.J.3
  • 12
    • 0025125851 scopus 로고
    • The role of metal ions in the conformation of the four-way junction
    • Duckett, D. R., Murchie, A. I. H. & Lilley, D. M. J. (1990) The role of metal ions in the conformation of the four-way junction, EMBO J. 9, 583-590.
    • (1990) EMBO J. , vol.9 , pp. 583-590
    • Duckett, D.R.1    Murchie, A.I.H.2    Lilley, D.M.J.3
  • 13
    • 0023430457 scopus 로고
    • Isolation and characterization of intermediates in site-specific recombination
    • Hoess, R., Wierzbicki, A. & Abremski, K. (1987) Isolation and characterization of intermediates in site-specific recombination. Proc. Natl Acad. Sci. USA 84, 6840-6844.
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 6840-6844
    • Hoess, R.1    Wierzbicki, A.2    Abremski, K.3
  • 14
    • 84959678845 scopus 로고
    • A mechanism for gene conversion in fungi
    • Holliday, R. (1964) A mechanism for gene conversion in fungi, Genet. Res. 5, 282-304.
    • (1964) Genet. Res. , vol.5 , pp. 282-304
    • Holliday, R.1
  • 16
    • 0029031144 scopus 로고
    • Relative stabilities of DNA three-way, four-way and five-way junctions (multi-helix junction loops): Unpaired nucleotides can be stabilizing or destabilizing
    • Kadrmas, J. L., Ravin, A. J. & Leontis, N. B. (1995) Relative stabilities of DNA three-way, four-way and five-way junctions (multi-helix junction loops): unpaired nucleotides can be stabilizing or destabilizing, Nucleic Acids Res. 23, 2212-2222.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 2212-2222
    • Kadrmas, J.L.1    Ravin, A.J.2    Leontis, N.B.3
  • 17
    • 0028308710 scopus 로고
    • Homologous pairing and DNA strand-exchange proteins
    • Kowalczykowski, S. C. & Eggleston, A. K. (1994) Homologous pairing and DNA strand-exchange proteins, Annu. Rev. Biochem. 63, 991-1043.
    • (1994) Annu. Rev. Biochem. , vol.63 , pp. 991-1043
    • Kowalczykowski, S.C.1    Eggleston, A.K.2
  • 19
    • 0027486238 scopus 로고
    • The structure of branched DNA species
    • Lilley, D. M. J. & Clegg, R. M. (1993b) The structure of branched DNA species, Q. Rev. Biophys. 26, 131-175.
    • (1993) Q. Rev. Biophys. , vol.26 , pp. 131-175
    • Lilley, D.M.J.1    Clegg, R.M.2
  • 22
    • 0031592939 scopus 로고    scopus 로고
    • NMR study of the exchange rate between two stacked conformers of a model Holliday junction
    • in the press
    • Overmars, F. J. J. & Altona, C. (1997) NMR study of the exchange rate between two stacked conformers of a model Holliday junction, J. Mol. Biol. in the press.
    • (1997) J. Mol. Biol.
    • Overmars, F.J.J.1    Altona, C.2
  • 23
    • 0028607348 scopus 로고
    • NMR studies and conformational analysis of a DNA four-way junction formed in a linear synthetic oligonucleotide
    • Pikkemaat, J. A., van den Elst, H., van Boom, J. H. & Altona, C. (1994) NMR studies and conformational analysis of a DNA four-way junction formed in a linear synthetic oligonucleotide, Biochemistry 33, 14896-14907.
    • (1994) Biochemistry , vol.33 , pp. 14896-14907
    • Pikkemaat, J.A.1    Van Den Elst, H.2    Van Boom, J.H.3    Altona, C.4
  • 24
    • 9844242808 scopus 로고
    • Thesis, Leiden Institute of Chemistry
    • Pikkemaat, J. A. (1995) Thesis, Leiden Institute of Chemistry.
    • (1995)
    • Pikkemaat, J.A.1
  • 25
    • 0028304612 scopus 로고
    • Structure of four-way DNA junctions containing a nick in one strand
    • Pöhler, J. R. G., Duckett, D. R. & Lilley, D. M. J. (1994)Structure of four-way DNA junctions containing a nick in one strand. J. Mol. Biol. 238, 62-74.
    • (1994) J. Mol. Biol. , vol.238 , pp. 62-74
    • Pöhler, J.R.G.1    Duckett, D.R.2    Lilley, D.M.J.3
  • 27
    • 0011275745 scopus 로고
    • Watergate: Water suppression by Gradient-Tailored Excitation
    • Saudek, V., Piotto, M. & Sklenár, V. (1994) WATERGATE: WATER suppression by Gradient-Tailored Excitation. Bruker Report, 140, 6-9.
    • (1994) Bruker Report , vol.140 , pp. 6-9
    • Saudek, V.1    Piotto, M.2    Sklenár, V.3
  • 28
    • 0020857308 scopus 로고
    • Design of immobile nucleic acid junctions
    • Seeman, N. C. & Kallenbach, N. R. (1983) Design of immobile nucleic acid junctions, Biophys. J. 44, 201-209.
    • (1983) Biophys. J. , vol.44 , pp. 201-209
    • Seeman, N.C.1    Kallenbach, N.R.2
  • 30
    • 45449123980 scopus 로고
    • Iterative schemes for bilinear operators; application to spin decoupling
    • Shaka, A. J., Lee, C. J. & Pines, A. (1988) Iterative schemes for bilinear operators; application to spin decoupling, J. Magn. Reson. 77, 274-293.
    • (1988) J. Magn. Reson. , vol.77 , pp. 274-293
    • Shaka, A.J.1    Lee, C.J.2    Pines, A.3
  • 32
    • 0024284496 scopus 로고
    • Resonance assignments of non-exchangeable protons in B type DNA oligomers, an overview
    • Van de Ven, F. J. M. & Hilbers, C. W. (1988) Resonance assignments of non-exchangeable protons in B type DNA oligomers, an overview, Nucleic Acids Res. 16, 5713-5726.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 5713-5726
    • Van De Ven, F.J.M.1    Hilbers, C.W.2
  • 33
    • 0025266027 scopus 로고
    • The stereochemistry of a four-way DNA junction: A theoretical study
    • Von Kitzing, E., Lilley, D. M. J. & Diekmann, S. (1990) The stereochemistry of a four-way DNA junction: a theoretical study. Nucleic Acids Res. 18, 2671-2683.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 2671-2683
    • Von Kitzing, E.1    Lilley, D.M.J.2    Diekmann, S.3
  • 34
    • 0022407077 scopus 로고
    • NMR analysis of DNA junctions: Imino proton NMR studies of individual arms and intact junction
    • Wemmer, D. E., Wand, A. J., Seeman, N. C. & Kallenbach, N. R. (1985) NMR analysis of DNA junctions: Imino proton NMR studies of individual arms and intact junction. Biochemistry 24, 5745-5749.
    • (1985) Biochemistry , vol.24 , pp. 5745-5749
    • Wemmer, D.E.1    Wand, A.J.2    Seeman, N.C.3    Kallenbach, N.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.