Dual-molecule spectroscopy: Molecular rulers for the study of biological macromolecules

IEEE Journal on Selected Topics in Quantum Electronics

Volumn 2, Issue 4, 1996, Pages 1115-1128

  Ha, T ^b,c   Enderle, Th ^b,c   Chemla, D S ^a,b,c   Weiss, S ^a,b,c  

^a IEEE

^b LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DISTANCE MEASUREMENT; FLUORESCENCE; LASER APPLICATIONS; MACROMOLECULES; MOLECULAR DYNAMICS; MOLECULAR ORIENTATION; MOLECULAR STRUCTURE;

DUAL MOLECULE SPECTROSCOPY; LASER INDUCED FLUORESCENCE; MOLECULAR RULERS;

MOLECULAR SPECTROSCOPY;

EID: 0030374319     PISSN: 1077260X     EISSN: None     Source Type: Journal    
DOI: 10.1109/2944.577342     Document Type: Article

References (39)

1. T. Hirschfeld, "Optical microscopic observation of single small molecules," Appl. Opt., vol. 15, pp. 2965-66, 1976.
2. E. B. Shera, N. K. Seitzinger, L. M. Davis, R. A. Keller, and S. A. Soper, "Detection of single fluorescent molecules," Chem. Phys. Lett., vol. 174, pp. 553-557, 1990.
3. W. E. Moerner, Kador, L., "Optical detection and spectroscopy of single molecules in a solid," Phys. Rev. Lett., vol. 62, pp. 2535-38, 1989.
4. D. W. Pohl, W. Denk, and M. Lanz, "Optical stethoscopy: Image recording with resolution lambda/20," Appl. Phys. Lett., vol. 42, pp. 651-653, 1984.
5. A. Lewis, A. Isaacson, A. Harootunian, and A. Muray, "Development of a 500 AA spatial resolution light microscope. I. Light is efficiently transmitted through lambda/16 diameter apertures," Ultratmicroscopy, vol. 13, pp. 227-230, 1984.
6. E. Betzig and J. K. Trautman, "Near-field optics - Microscopy, spectroscopy, and surface modification beyond the diffraction limit," Science, vol. 257, pp. 189-195, 1992.
7. E. Betzig and R. J. Chichester, "Single molecules observed by near-field scanning optical microscopy," Science, vol. 262, pp. 1422-1425, 1993.
8. J. K. Trautman, J. J. Macklin, L. E. Brus, and E. Betzig, "Near-field spectroscopy of single molecules at room temperature," Nature, vol. 369, pp. 40-42, 1994.
9. X. S. Xie and R. C. Dunn, "Probing single molecule dynamics," Science, vol. 265, pp. 361-364, 1994.
10. W. P. Ambrose, P. M. Goodwin, J. C. Martin, and R. A. Keller, "Alterations of single molecule fluorescence lifetimes in near-field optical microscopy," Science, vol. 265, pp. 364-367, 1994.
11. R. X. Bian, R. C. Dunn, X. S. Xie, and P. T. Leung, "Single molecule emission characteristics in near-field microscopy," Phys. Rev. Lett., vol. 75, pp. 4772-4775, 1995.
12. J. K. Trautman and J. J. Macklin, "Time-resolved spectroscopy of single molecules using near-field and far-field optics," Chem. Phys., vol. 205, pp. 221-229, 1996.
13. J. J. Macklin, J. K. Trautman, T. D. Harris, and L. E. Brus, "Imaging and time-resolved spectroscopy of single molecules at an interface," Science, vol. 272, pp. 255-258, 1996.
14. R. Toledo-Crow, P. C. Yang, Y. Chen, and M. Vaeziravani, "Near-field differential scanning optical microscope with atomic force regulation," Appl. Phys. Lett., vol. 60, pp. 2957-2959, 1992.
15. E. Betzig, P. L. Finn, and J. S. Weiner, "Combined shear force and near-field scanning optical microscopy," Appl. Phys. Lett., vol. 60, pp. 2484-2486, 1992.
16. P. J. Moyer and S. B. Kammer, "High-resolution imaging using near-field scanning optical microscopy and shear force feedback in water," Appl. Phys. Lett., vol. 68, pp. 3380-3382, 1996.
17. S. M. Nie, D. T. Chiu, and R. N. Zare, "Probing individual molecules with confocal fluorescence microscopy," Science, vol. 266, pp. 1018-1021, 1994.
18. J. Widengren, R. Rigler, and U. Mets, "Triplet-state monitoring by fluorescence correlation spectroscopy," J. Fluorescence, vol. 4, pp. 255, 1994.
19. J. Mertz, C. Xu, and W. W. Webb, "Single-molecule detection by two-photon-excited fluorescence," Opt. Lett., vol. 20, pp. 2532-2534, 1995.
20. T. Funatsu, Y. Harada, M. Tokunaga, K. Saito, and T. Yanagida, "Imaging of single fluorescent molecules and individual ATP turnovers by single myosin molecules in aqueous solution," Nature, vol. 374, pp. 555-559, 1995.
21. I. Sase, H. Miyata, J. E. T. Corrie, J. S. Craik, and K. Kinosita, "Real time imaging of single fluorophores on moving actin with an epifluorescence microscope," Biophys. J., vol. 69, pp. 323-328, 1995.
22. R. D. Vale, T. Funatsu, D. W. Pierce, L. Romberg, Y. Harada, and T. Yanagida, "Direct observation of single kinesin molecules moving along microtubules," Nature, vol. 380, pp. 451-453, 1996.
23. J. H. Jett, R. A. Keller, J. C. Martin, B. L. Marrone, R. K. Moyzis, R. L. Ratliff, N. K. Seitzinger, E. B. Shera, and C. C. Stewart, "High-speed dna sequencing - An approach based upon fluorescence detection of single molecules," J. Biomolecular Structure & Dynamics, vol. 7, pp. 301-309, 1989.
24. R. A. Keller, W. P. Ambrose, P. M. Goodwin, J. H. Jett, J. C. Martin, and M. Wu, "Single molecule fluorescence analysis in solution," Appl. Spectroscopy, vol. 50, pp. A12-A32, 1996.
25. T. Ha, T. Enderle, D. F. Ogletree, D. S. Chemla, P. R. Selvin, and S. Weiss, "Probing the interaction between two single molecules - Fluorescence resonance energy transfer between a single donor and a single acceptor," in Proc. Nat. Acad. Sci. U.S.A., vol. 93, pp. 6264-6268, 1996.
26. H. G. Hansma, D. E. Laney, M. Bezanilla, R. L. Sinsheimer, and P. K. Hansma, "Applications for atomic force microscopy of DNA," Biophys. J., vol. 68, pp. 1672-7, 1995.
27. J. B. Pawley, in Handbook of Biological Confocal Microscopy, 2nd ed. New York: Plenum, 1995.
28. T. Ha, D. S. Chemla, T. Enderle, and S. Weiss, "Single molecule spectroscopy with automated positioning," Appl. Phys. Lett., vol. 70, p. 182, 1997.
29. T. Ha, T. Enderle, P. R. Selvin, D. S. Chemla, and S. Weiss, "Quantum jumps os single molecules at room temperature," Chem. Phys. Lett., to be published.
30. T. Ha, T. Enderle, D. S. Chemla, P. R. Selvin, and S. Weiss, "Single molecule dynamics studied by polarization modulation," Phys. Rev. Lett., vol. 77, pp. 3979-3982, 1996.
31. M. Wu, P. M. Goodwin, W. P. Ambrose, and R. A. Keller, "Photochemistry and fluorescence emission dynamics of single molecules in solution-B-hycoerythrin," J. Phys. Chem., vol. 100, pp. 17406-17409, 1996.
32. C. R. Cantor and P. R. Schimmel, Biophysical Chemistry, vol. 2. San Francisco, CA: W. H. Freeman, 1980.
33. L. Stryer and R. P. Haugland, "Energy transfer: A spectroscopic ruler," Proc. Nat. Acad. Sci. U.S.A., vol. 58, pp. 719-730, 1967.
34. P. R. Selvin, "Lanthanide-based resonance energy transfer," this issue, pp. 1077-1087.
35. C. J. R. Sheppard and T. Wilson, "Depth of field in the scanning microscope," Opt. Lett., vol. 3, pp. 115-117, 1978.
36. E. Betzig, "Proposed method for molecular optical imaging," Opt. Lett., vol. 20, pp. 237-239, 1995.
37. N. Bobroff, "Position measurement with a resolution and noise-limited instrument," Rev. Scientif. Instrum., vol. 57, pp. 1152, 1986.
38. C. Xu and W. W. Webb, "Measurement of two-photon excitation cross sections of molecular fluorophores with data from 690 to 1050 nm," J. Opt. Soc. Amer. B-Opt. Phys., vol. 13, pp. 481-491, 1996.
39. T. Enderle, T. Ha, D. S. Chemla, C. Magowan, and S. Weiss, "Surface specific mapping and co-localization of malarial and host proteins in red-blood-cell membrane by dual-color near-field scanning optical microscopy," in Proc. Nat. Acad. Sci. U.S.A., to be published.