New chips for molecular biology and diagnostics

Biotechnology Annual Review

Volumn 8, Issue , 2002, Pages 85-101

  Zammatteo, Nathalie ^a   Hamels, Sandrine ^a   De Longueville, Françoise ^a   Alexandre, Isabelle ^a   Gala, Jean Luc ^b   Brasseur, Francis ^c   Remacle, José ^a  

^a UNIVERSITY OF NAMUR   (Belgium)

^b CLINIQUES UNIVERSITAIRES SAINT LUC   (Belgium)

^c LUDWIG INSTITUTE FOR CANCER RESEARCH   (Belgium)

Author keywords

Diagnosis; DNA microarray

Indexed keywords

GENOMIC DNA; GENOMIC RNA;

COLORIMETRY; COST; DIAGNOSTIC PROCEDURE; DNA MICROARRAY; DNA PROBE; DNA SEQUENCE; GENETIC DISORDER; HYBRIDIZATION; INFECTION; INFORMATION PROCESSING; MOLECULAR BIOLOGY; POLYMERASE CHAIN REACTION; REVIEW;

EID: 0012712917     PISSN: 13872656     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S1387-2656(02)08005-5     Document Type: Article

References (32)

1. Affymetrix USA and Ine 1997. WO9743450.
2. Polz MF and Cavanaugh CM. Bias in template to product ratios in multitemplate PCR. Appl Environ Microbiol 1998;64:3724-3730.
3. Schulze A and Downward J. Navigating gene expression using microarrays - a technology review. Nature Cell Biology 2001;3:E190-195.
4. Lemieux B, Aharoni A and Schena M. Overview of DNA chip technology. Molecular breeding 1998;4:277-289.
5. Lipshutz RJ, Fodor SP, Gingeras TR and Lockhart DJ. High density synthetic oligonucleotide arrays. Nature Genet 1999;21:20-24.
6. Southern E, Mir K and Shchepinov M. Molecular interactions on microarrays. Nature Genetics supplement 1999;21:5-9.
7. Schena M, Shalon D, Davis RW and Brown PO. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995;270:467-470.
8. Allemand JF, Bensimon D, Jullien L, Bensimon A and Croquette V. pH-dependent specific binding and combing of DNA Biophys J 1997;73:2064-2070.
9. Duggan DJ, Bittner M, Chen Y, Meltzer P and Trent JM. Expression profiling using cDNA microarrays. Nature Genetics supplement 1999;21:10-14.
10. Schena M, Shalon D, Heller R, Chai A, Brown P and Davis R. Parallel human genome analysis: microarray-based expression monitoring of 1000 genes. Proc Natl Acad Sci USA 1996;93:10614-10619.
11. Zammatteo N, Jeanmart L, Hamels S, Courtois S, Louette P, Hevesi L and Remacle J. Comparison between different strategies of covalent attachment of DNA to glass surfaces to build DNA microarrays. Anal Biochem 2000;280:143-150.
12. Heller R, Schena A, Chai A, Shalone D, Bedilion T, Gilmore J, Woolley D and Davis R.W.: Discovery and analysis of inflammatory disease-related genes using cDNA microarrays. Proc Natl Acad Sci USA 1997;94:2150-2155.
13. Schena M. Genome analysis with gene expression microarrays. BioEssays 1996;18:427-431.
14. Chenchik A, Chen S, Makhanov M and Siebert P. Profiling gene expression in a human glioblastoma cell line using ATLAS human cDNA expression array I. Clontechnique 1996;13:16-17.
15. Rajeevan MS, Dimulescu IM, Unger ER and Vernon SD. Chemiluminescent analysis of gene expression on high density filter arrays. J Histochem Cytochem 1999;47:337-342.
16. Chen JW, Wu R, Yang PC, Huang JY, Sher YP, Han MH, Kao WC, Lee PJ, Chiu TR, Chang F, Chu YW, Wu CW and Peck K. Profiling expression patterns and isolating differentially expressed genes by cDNA microarrays system with colorimetry detection. Genomics 1998;51:313-324.
17. Alexandre I, Hamels S, Dufour S, Collet J, Zammatteo N, De Longueville F, Gala J-L. and Remacle J. Colorimetric silver detection of DNA microarrays. Anal Biochem 2001;295:1-8.
18. Favis R and Barany F. Mutation detection in K-ras, BRCA1, BRCA2, and p53 using PCR/LDR and a universal DNA microarray. Ann N Y Acad Sci 2000;906:39-43.
19. Favis R, Day JP, Gerry NP, Phelan C, Narod S and Barany F. Universal DNA array detection of small insertions and deletions in BRCA1 and BRCA2. Nature Biotechnol 2000;18:561-564.
20. Ween WH, Berstein L, Lescallett J, Beazer-Barclay Y, Sullivan-Halley J, White M and Press MF. Comparison of TP53 mutations identified by oligonucleotide microarray and conventional DNA sequence analysis. Cancer Res 2000;60:2716-2722.
21. Cronin MT, Fucini RV, Kim SM, Masino RS, Wespi RM and Miyada CG. Cystis fibrosis mutation detection by hybridization to light generated DNA probe arrays. Hum Mutat 1996;7:244-255.
22. Dobrowolski SF, Banas RA, Naylor EW, Powdrill T and Thakkar D. DNA microarray technology for neonatal screening. Acta Paediatr Suppl 1999;88:61-64.
23. Anthony RM, Brown TJ and French GL. DNA array technology and diagnostic microbiology. Expert Rev Mol Diagn 2001;1:30-38.
24. Troesch A, Nguyen H, Miyada CG, Desvarenne S, Gingeras TR, Kaplan PM, Cros P and Mabilat C. Mycobacterium species identification and rifampin resistance testing with high-density DNA probe arrays. J Clin Microbiol 1999;37:49-55.
25. Kozal MJ, Shah N, Shen N, Yang R, Fucini R, Merigan TC, Richman DD, Morris D, Hubbell E, Chee M and Gingeras TR. Extensive polymorphisms observed in HIV-1 clade B protease gene using high-density oligonucleotide arrays. Nature Med 1996;2:753-759.
26. Stuyver L, Wyseur A, Rombout A, Louwagie J, Scarcez T, Verhofstede C, Rimland D, Schinazi RF and Rossau R. Line probe assay for rapid detection of drug-selected mutations in the human immunodeficiency virus Type 1 reverse transcriptase gene. Antimicrobial Agents Chemother 1997;41:284-291.
27. Affymetrix USA and Inc 1997. WO9729212.
28. Shchepinov MS, Case-Green SC and Southern EM. Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays. Nucleic Acids Res 1997;25:1155-1161.
29. Hamels S, Gala J-L, Dufour S, Vannuffel P, Zammatteo N, Leclerc G and Remacle J. DNA for simultaneous diagnosis of genus Staphylococcus, staphylococcal species and methicillin-resistance. Biotechniques 2001;31:1364-1372.
30. Anthony RM, Brown TJ and French GL. Rapid diagnosis of bacteremia by universal amplification of 23S ribosomal DNA followed by hybridization to an oligonucleotide array. J Clin Microbiol 2000;38:781-788.
31. Zammatteo N, Lockman L, Brasseur F, De Plaen E, Lurquin C, Lobert PE, Hamels S, Boon T and Remacle JA. DNA microarray to monitor the expresson of MAGE-A genes. Clin Chem 2002;48:25-34.
32. Khandurina J, McKnight TE, Jacobson SC, Waters LC, Foote RS and Ramsey JM. Integrated system for rapid PCR-based DNA analysis in microfluidic devices. Anal Biochem 2000; 72:2995-3000.