Temporal-method estimates of Ne from highly polymorphic loci

Conservation Genetics

Volumn 2, Issue 4, 2001, Pages 297-308

  Turner, Thomas F ^a   Salter, Laura A ^a   Gold, John R ^b  

^a UNIVERSITY OF NEW MEXICO   (United States)

^b TEXAS A AND M UNIVERSITY   (United States)

Author keywords

Coalescent; Confidence intervals; Monte Carlo methods; Red drum (Sciaenops ocellatus); Statistical power; Variance effective population size

Indexed keywords

EID: 0005992023     PISSN: 15660621     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1012538611944     Document Type: Article

References (33)

1. Avise JC (2000) Phylogeography. Sinauer Associates, Sunderland, MA.
2. Brooker AL, Cook D, Bentzen P, Wright JM, Doyle RW (1994) Organization of microsatellites differs between mammals and cold-water teleost fishes. Can. J. Fish. Aquat. Sci., 51, 1959-1966.
3. Broughton RE, Gold JR (1997) Microsatellite development and survey of variation in northern bluefin tuna (Thunnus thynnus). Mol. Mar. Biol. Biotech., 6, 308-314.
4. Brown WM (1983) Evolution of animal mitochondrial DNA. In: Evolution of Genes and Proteins (eds. Nei M, Koehn RK), pp. 62-88. Sinauer, Sunderland, Mass.
5. Chakraborty R, Fuerst PA, Nei M (1980) Statistical studies on protein polymorphism in natural populations. III. Distribution of allele frequencies and the number of alleles per locus. Genetics, 94, 1039-1063.
6. Chambers SM (1995) Spatial structure, genetic variation, and the neighborhood adjustment to effective population size. Conservation Biology, 9, 1312-1315.
7. Crow JF (1986) Basic concepts in population, quantitative, and evolutionary genetics. W.H. Freeman and Co., New York.
8. Donnelly P, Tavare S (1995) Coalescents and genealogical structure under neutrality. Ann. Rev. Genetics, 29, 401-421.
9. DeWoody JA, Avise JC (2000) Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals. J. Fish Biol., 56, 461-473.
10. Ewens WJ (1972) The sampling theory of selectively neutral alleles. Theor. Pop. Biol., 3, 87-112.
11. Frankel OH, Soulé ME (1981) Conservation and Evolution. Cambridge University Press, Cambridge.
12. Frankham R (1995) Conservation genetics. Ann. Rev. Genet., 29, 305-327.
13. Gold JR, Richardson LR, Turner TF (1999) Temporal stability and spatial divergence of mitochondrial DNA haplotype frequencies in red drum (Sciaenops ocellatus) from coastal regions of the western Atlantic Ocean and Gulf of Mexico. Mar. Biol., 133, 593-602.
14. Hedgecock D, Chow V, Waples RS (1992) Effective population numbers of shellfish broodstocks estimated from temporal variance in allelic frequencies. Aquaculture, 108, 215-232.
15. Husband BC, Barrett SCH (1992) Effective population size and genetic drift in tristylous Eichornia paniculata (Pontederiaceae). Evolution, 46, 1875-1890.
16. Jarne P, Lagoda PJL (1996) Microsatellites, from molecules to populations and back. Trends Ecol. Evol., 11, 424-429.
17. Jorde PE, Ryman N (1996) Demographic genetics of brown trout (Salmo trutta) and estimation of effective population size from temporal change in allele frequencies. Genetics, 143, 1369-1381.
18. Laikre L, Jorde PE, Ryman N (1998) Temporal change of mtDNA haplotype frequencies and female effective size in a brown trout population. Evolution, 52, 910-915.
19. Lewontin RC, Krakauer J (1973) Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. Genetics, 74, 175-195.
20. Luikart G, Cornuet JM, Allendorf FW (1999) Temporal changes in allele frequencies provide estimates of population bottleneck size. Conserv. Biol., 13, 523-530.
21. Miller LM, Kapuscinski AR (1997) Historical analysis of genetic variation reveals low effective population size in a northern pike (Esox lucius) population. Genetics, 147, 1249-1258.
22. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York.
23. Nei M, Tajima F (1981) Genetic drift and the estimation of effective population size. Genetics, 98, 625-640.
24. Pollak E (1983) A new method for estimating the effective population size from allele frequency changes. Genetics, 104, 531-548.
25. Rice JA (1995) Mathematical Statistics and Data Analysis, 2nd Ed. Duxbury Press, Belmont, California.
26. Richards C, Leberg PL (1996) Temporal changes in allele frequencies and a population's history of severe bottle necks. Cons. Biol., 10, 832-839.
27. Robertson A (1975a) Remarks on the Lewontin-Krakauer test. Genetics, 80, 396.
28. Robertson A (1975b) Gene frequency distributions as a test of selective neutrality. Genetics, 81, 775-785.
29. Schultz ST, Lynch M (1997) Mutation and extinction: the role of variable mutation effects synergistic epistasis, beneficial mutations, and degree of outcrossing. Evolution, 51, 1363-1371.
30. Turner TF, Richardson LR, Gold JR (1998) Polymorphic microsatellite DNA markers in red drum (Sciaenops ocellatus). Mol. Ecol., 7, 1771-1773.
31. Turner TF, Richardson LR, Gold JR (1999) Temporal genetic variation of mtDNA and effective female population size of red drum in the northern Gulf of Mexico. Mol. Ecol., 8, 1223-1230.
32. Waples RS (1989) A generalized approach for estimating effective population size from temporal changes in allele frequency. Genetics, 121, 379-391.
33. Williamson EG, and Slatkin M (1999) Using maximum-likelihood to estimate population size from temporal changes in allele frequencies. Genetics, 152, 755-761.