p48 activates a UV-damaged-DNA binding factor and is defective in xeroderma pigmentosum group E cells that lack binding activity

Molecular and Cellular Biology

Volumn 18, Issue 7, 1998, Pages 4391-4399

  Hwang, Byung Joon ^a   Toering, Stephanie ^a   Francke, Uta ^b   Chu, Gilbert ^a,c  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b STANFORD UNIVERSITY   (United States)

^c STANFORD UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; CYCLOBUTANE; DNA BINDING PROTEIN; POLYPEPTIDE; PYRIMIDINE DIMER;

AMINO ACID SUBSTITUTION; ANIMAL CELL; ARTICLE; CHO CELL; CHROMATIN; CHROMOSOME 11P; CONTROLLED STUDY; DNA BINDING; DNA DAMAGE; DNA REPAIR; HUMAN; HUMAN CELL; HYBRID CELL; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; ULTRAVIOLET RADIATION; XERODERMA PIGMENTOSUM;

ANIMALIA; CRICETINAE;

EID: 0001232093     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.18.7.4391     Document Type: Article

References (45)

1. Aboussekhra, A., M. Biggerstaff, M. Shivji, J. Vilpo, V. Moncollin, V. Podust, M. Protic, U. Hubscher, J. Egly, and R. Wood. 1995. Mammalian DNA nucleotide excision repair reconstituted with purified protein components. Cell 80:859-868.
2. Abramic, M., A. Levine, and M. Protic. 1991. Purification of an ultraviolet-inducible, damage-specific DNA-binding protein from primate cells. J. Biol. Chem. 266:22493-22500.
3. Bohr, V., C. Smith, D. Okumoto, and P. Hanawalt. 1985. DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall. Cell 40:359-369.
4. Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
5. Burns, J. L., S. N. Guzder, P. Sung, S. Prakash, and L. Prakash. 1996. An affinity of human replication protein A for ultraviolet-damaged DNA. J. Biol. Chem. 271:11607-11610.
6. Chu, G., and E. Chang. 1990. Cisplatin-resistant cells express increased levels of a factor that recognizes damaged DNA. Proc. Natl. Acad. Sci. USA 87:3324-3327.
7. Chu, G., and E. Chang. 1988. Xeroderma pigmentosum group E cells lack a nuclear factor that binds to damaged DNA. Science 242:564-567.
8. Chu, G., and L. Mayne. 1996. Xeroderma pigmentosum, Cockayne syndrome and trichothiodystrophy: do the genes explain the disease? Trends Genet. 12:187-192.
9. Chu, G., and P. A. Sharp. 1981. SV40 DNA transfection of cells in suspension: analysis of the efficiency of transcription and translation of T antigen. Gene 13:197-202.
10. Cleaver, J. E. 1968. Defective repair replication of DNA in xeroderma pigmentosum. Nature 218:652-656.
11. de Wet, J. R., K. V. Wood, M. DeLuca, D. R. Helinski, and S. Subramani. 1987. Firefly luciferase gene: structure and expression in mammalian cells. Mol. Cell. Biol. 7:725-737.
12. Dualan, R., T. Brody, S. Keeney, A. Nichols, A. Admon, and S. Linn. 1995. Chromosomal localization and cDNA cloning of the genes (DDB1 and DDB2) for the p127 and p48 subunits of a human damage-specific DNA binding protein. Genomics 29:62-69.
13. Francke, U., N. Busby, D. Shaw, S. Hansen, and M. G. Brown. 1976. Intrachromosomal gene mapping in man: assignment of nucleoside phosphorylase to region 14cen-14q21 by interspecific hybridization of cells with a t(X;14) (p22;q21) translocation. Somatic Cell Genet. 2:27-40.
14. Francke, U., and B. Francke. 1981. Requirement of the human chromosome 11 long arm for replication of herpes simplex virus type 1 in nonpermissive Chinese hamster X human diploid fibroblast hybrids. Somatic Cell Genet. 7:171-191.
15. Gaillard, P.-H. L., E. M.-D. Martini, P. D. Kaufman, B. Stillman, E. Moustacchi, and G. Almouzni. 1996. Chromatin assembly coupled to DNA repair: a new role for chromatin assembly factor 1. Cell 86:887-896.
16. Hanawalt, P. 1994. Transcription-coupled repair and human disease. Science 266:1957-1958.
17. He, Z., L. Henricksen, M. Wold, and C. Ingles. 1995. RPA involvement in the damage-recognition and incision steps of nucleotide excision repair. Nature 374:566-569.
18. Henning, K., L. Li, N. Iyer, L. McDaniel, M. Reagan, R. Legerski, S. R. M. Stefanini, A. Lehmann, L. Mayne, and E. Friedberg. 1995. The Cockayne syndrome group A gene encodes a WD repeat protein that interacts with CSB protein and a subunit of RNA polymerase II TFIIH. Cell 82:555-564.
19. Hirschfeld, S., A. S. Levine, K. Ozato, and M. Protíc. 1990. A constitutive damage-specific DNA-binding protein is synthesized at higher levels in UV-irradiated primate cells. Mol. Cell. Biol. 10:2041-2048.
20. Hwang, B., J. Liao, and G. Chu. 1996. Isolation of a cDNA encoding a UV-damaged DNA binding factor defective in xeroderma pigmentosum group E cells. Mutat. Res. 362:105-117.
21. Hwang, B. J., and G. Chu. 1993. Purification and characterization of a protein that binds to damaged DNA. Biochemistry 32:1657-1666.
22. Kataoka, H., and Y. Fujiwara. 1991. UV damage-specific DNA-binding protein in xeroderma pigmentosum complementation group E. Biochem. Biophys. Res. Commun. 175:1139-1143.
23. Kaufman, P. D., R. Kobayashi, and B. Stillman. 1997. Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiae cells lacking chromatin assembly factor-1. Genes Dev. 11:345-357.
24. Kazantsev, A., D. Mu, A. F. Nichols, X. Zhao, S. Linn, and A. Sancar. 1996. Functional complementation of xeroderma pigmentosum complementation group E by replication protein A in an in vitro system. Proc. Natl. Acad. Sci. USA 93:5014-5018.
25. Keeney, S., G. J. Chang, and S. Linn. 1993. Characterization of human DNA damage binding protein implicated in xeroderma pigmentosum E. J. Biol. Chem. 268:21293-21300.
26. Keeney, S., A. Eker, T. Brody, W. Vermuelen, D. Bootsma, J. Hoeijmakers, and S. Linn. 1994. Correction of the DNA repair defect in xeroderma pigmentosum group E by injection of a DNA damage-binding protein. Proc. Natl. Acad. Sci. USA 91:4053-4056.
27. Keeney, S., H. Wein, and S. Linn. 1992. Biochemical heterogeneity in xeroderma pigmentosum complementation group E. Mutat. Res. 273:49-56.
28. Martinville, B., J. Giacalone, C. Shih, R. A. Weinberg, and U. Francke. 1983. Oncogene from human EJ bladder carcinoma is located on the short arm of chromosome 11. Science 219:498-501.
29. Mellon, I., G. Spivak, and P. Hanawalt. 1987. Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene. Cell 51:241-249.
30. Nichols, A., P. Ong, and S. Linn. 1996. Mutations specific to the xeroderma pigmentosum group E Ddb-phenotype. J. Biol. Chem. 271:24317-24320.
31. Oliver, N., U. Francke, and M. A. Pellegrino. 1978. Regional assignment of genes for mannose phosphate isomerase, pyruvate kinase-3, and b2-microglobulin expression on human chromosome 15 by hybridization of cells from a t(15; 22) (q14:q13.3) translocation carrier. Cytogenet. Cell Genet. 22:506-510.
32. Parthun, M. R., J. Widom, and D. E. Gottschling. 1996. The major cytoplasmic histone acetyltransferase in yeast: links to chromatin replication and histone metabolism. Cell 87:85-94.
33. Payne, A., and G. Chu. 1994. Xeroderma pigmentosum group E binding factor recognizes a broad spectrum of DNA damage. Mutat. Res. 310:89-102.
34. Qian, Y. W., and E. Y. H. P. Lee. 1995. Dual retinoblastoma-binding proteins with properties related to a negative regulator of Ras in yeast. J. Biol. Chem. 270:25507-25513.
35. Rathmell, W. K., and G. Chu. 1994. A DNA end-binding factor involved in double-strand break repair and V(D)J recombination. Mol. Cell. Biol. 14: 4741-4748.
36. Rathmell, W. K., and G. Chu. 1994. Involvement of the Ku autoantigen in the cellular response to DNA double-strand breaks. Proc. Natl. Acad. Sci. USA 91:7623-7627.
37. Rathmell, W. K., W. K. Kaufmann, J. C. Hurt, L. L. Byrd, and G. Chu. 1997. DNA-dependent protein kinase is not required for accumulation of p53 or cell cycle arrest after DNA damage. Cancer Res. 57:68-74.
38. Reardon, J. T., A. F. Nichols, S. Keeney, C. A. Smith, J. S. Taylor, S. Linn, and A. Sancar. 1993. Comparative analysis of binding of human damaged DNA-binding protein (XPE) and Escherichia coli damage recognition protein (uvrA) to the major ultraviolet photoproducts: T[c,s]T, T[t,s]T, T[6-4]T, and T[Dewar]T. J. Biol. Chem. 268:21301-21308.
39. Ruggieri, R., K. Tanaka, M. Nakafuku, Y. Kaziro, A. Toh-e, and K. Matsumoto. 1989. MSI1, a negative regulator of the RAS-cAMP pathway in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 86:8778-8782.
40. Smider, V., W. K. Rathmell, M. Lieber, and G. Chu. 1994. Restoration of X-ray resistance and V(D)J recombination in mutant cells by Ku cDNA. Science 266:288-291.
41. Takao, M., M. Abramic, M. Moos, V. Otrin, J. Wootton, M. McLenigan, A. Levine, and M. Protic. 1993. A 127-kDa component of a UV-damaged DNA-binding complex, which is defective in some xeroderma pigmentosum group E patients, is homologous to a slime mold protein. Nucleic Acids Res. 21:4111-4118.
42. Treiber, D., Z. Chen, and J. Essigmann. 1992. An ultraviolet light-damaged DNA recognition protein absent in xeroderma pigmentosum group E cells binds selectively to pyrimidine (6-4) pyrimidone photoproducts. Nucleic Acids Res. 20:5805-5810.
43. Tyler, J. K., M. Bulger, R. T. Kamakaka, R. Kobayashi, and J. T. Kadonaga. 1996. The p55 subunit of Drosophila chromatin assembly factor 1 is homologous to a histone deacetylase-associated protein. Mol. Cell. Biol. 16:6149-6159.
44. Verreault, A, P. D. Kaufman, R. Kobayashi, and B. Stillman. 1996. Nucleosome assembly by a complex of CAF-1 and acetylated histones H3/H4. Cell 87:95-104.
45. Zhang, X. K., B. Hoffmann, B. Tran, and P. Magnus. 1992. Retinoid X receptor is an auxiliary protein for thyroid hormone and retinoic acid receptors. Nature 355:441-446.