Functional comparison of the transposition core machineries of phage Mu and Haemophilus influenzae Mu-like prophage Hin-Mu reveals interchangeable components

Virology

Volumn 331, Issue 1, 2005, Pages 6-19

  Saariaho, Anna Helena ^a   Lamberg, Arja ^a   Elo, Seija ^b   Savilahti, Harri ^a  

^a UNIVERSITY OF HELSINKI   (Finland)

^b Fac Sci Km 8 Ain Chock Univ H   (Morocco)

Author keywords

Bacteriophage Mu; DNase I footprinting; In vitro NDA transposition; mua transposase; Prophage

Indexed keywords

DEOXYRIBONUCLEASE I; MUA TRANSPOSASE; TRANSPOSASE; UNCLASSIFIED DRUG; VIRUS ENZYME;

ARTICLE; BACTERIOPHAGE MU; CONTROLLED STUDY; DNA FOOTPRINTING; DNA PROTEIN COMPLEX; DNA SEQUENCE; DNA TRANSPOSITION; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME BINDING; EVALUATION; GENETIC CODE; HAEMOPHILUS INFLUENZAE; IN VITRO STUDY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROPHAGE; SEQUENCE ANALYSIS;

AMINO ACID SEQUENCE; BACTERIOPHAGE MU; BASE SEQUENCE; BINDING SITES; CATALYSIS; DEOXYRIBONUCLEASE I; DNA FOOTPRINTING; DNA TRANSPOSABLE ELEMENTS; DNA, VIRAL; GENOME, VIRAL; HAEMOPHILUS INFLUENZAE; MOLECULAR SEQUENCE DATA; PROPHAGES; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; TRANSPOSASES;

BACTERIA (MICROORGANISMS); ENTEROBACTERIA PHAGE MU; HAEMOPHILUS; HAEMOPHILUS INFLUENZAE; HAEMOPHILUS INFLUENZAE RD KW20;

EID: 9944230416     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virol.2004.09.041     Document Type: Article

References (36)

1. G.E. Allison, D. Angeles, N. Tran-Dinh, and N.K. Verma Complete genomic sequence of Sfv, a serotype converting temperate bacteriophage of Shigella flexneri J. Bacteriol. 184 2002 1974 1987
2. G. Chaconas, and R.M. Harshey Transposition of phage Mu DNA N.L. Craig R. Craigie M. Gellert A.M. Lambowitz Mobile DNA II 2002 ASM Press Washington 384 402
3. G. Chaconas, B.D. Lavoie, and M.A. Watson DNA transposition: jumping gene machine, some assembly required Curr. Biol. 6 1996 817 820
4. R.T. Clubb, J.G. Omichinski, H. Savilahti, K. Mizuuchi, A.M. Groenenborn, and M. Clore A novel class of winged helix-turn-helix protein: the DNA-binding domain of Mu transposase Structure 2 1994 1041 1048
5. T.R. Clubb, S. Schumacher, K. Mizuuchi, A. Groenenborn, and M. Clore Solution structure of the Iγ subdomain of the Mu end DNA-binding domain of phage Mu transposase J. Mol. Biol. 273 1997 19 25
6. N.L. Craig Unity in transposition reactions Science 270 1995 253 254
7. N.L. Craig R. Craigie M. Gellert A.M. Lambowitz Mobile DNA II 2002 ASM Press Washington
8. R. Craigie, M. Mizuuchi, and K. Mizuuchi Site-specific recognition of the bacteriophage Mu ends by the Mu A protein Cell 39 1984 387 394
9. R. Craigie, D.J. Arndt-Jovin, and K. Mizuuchi A defined system for the DNA strand-transfer reaction at the initiation of bacteriophage Mu transposition: protein and DNA substrate requirements Proc. Natl. Acad. Sci. U.S.A. 82 1985 7570 7574
10. D.R. Davies, I.Y. Goryshin, W.S. Reznikoff, and I. Rayment Three-dimensional structure of the Tn5 synaptic complex transposition intermediate Science 289 2000 77 85
11. M.S. DuBow Transposable Mu-like phages N. Symonds A. Touissaint P. van de Putte M.M. Howe Phage Mu 1987 Cold Spring Harbor Laboratory Cold Spring Harbor, NY 201 214
12. R.D. Fleischmann, M.D. Adams, O. White, R.A. Clayton, E.F. Kirkness, and A.R. Kerlavage Whole-genome random sequencing and assembly of Haemophilus influenzae Rd Science 269 1995 496 512
13. I. Goldhaber-Gordon, M.H. Early, M.K. Gray, and T.A. Baker Sequence and positional requirements for DNA sites in a Mu transpososome J. Biol. Chem. 277 2002 7703 7712
14. I. Goldhaber-Gordon, T.L. Williams, and T.A. Baker DNA recognition sites activate MuA transposase to perform transposition of non-Mu DNA J. Biol. Chem. 277 2002 7694 7702
15. M.A.M. Groenen, and P. van de Putte Analysis of the ends of bacteriophage Mu using site-directed mutagenesis J. Mol. Biol. 189 1986 597 602
16. S. Haapa, S. Suomalainen, S. Eerikäinen, M. Airaksinen, L. Paulin, and H. Savilahti An efficient DNA sequencing strategy based on the bacteriophage Mu in vitro transposition reaction Genome Res. 9 1999 308 315
17. S. Haapa, S. Taira, E. Heikkinen, and H. Savilahti An efficient and accurate integration of mini-Mu transposons in vitro: a general methodology for functional genetic analysis and molecular biology applications Nucleic Acids Res. 27 1999 2777 2784
18. R.A. Hull, G.S. Gill, and R. Curtiss III Genetic characterization of Mu-like bacteriophage D108 J. Virol. 27 1978 513 518
19. E. Krementsova, M.J. Griffin, D. Pincus, and T.A. Bakers Mutational analysis of the Mu transposase J. Biol. Chem. 273 1998 31358 31365
20. C.-F. Kuo, A. Zou, M. Jayaram, E. Getzoff, and R. Harshey DNA-protein complexes during attachment-site synapsis in Mu DNA transposition EMBO J. 10 1991 1585 1591
21. A. Lamberg, S. Nieminen, M. Qiao, and H. Savilahti Efficient insertion mutagenesis for bacterial genomes involving electroporation of in vitro-assembled DNA transposition complexes of bacteriophage Mu Appl. Environ. Microbiol. 68 2002 705 712
22. I. Lee, and R.M. Harshey Importance of the conserved CA dinucleotide at Mu termini J. Mol. Biol. 314 2001 433 444
23. K. Mizuuchi In vitro transposition of bacteriophage Mu: a biochemical approach to a novel replication reaction Cell 35 1983 789 794
24. K. Mizuuchi Transpositional recombination: mechanistic insights from studies of Mu and other elements Annu. Rev. Biochem. 61 1992 1011 1051
25. M. Mizuuchi, T.A. Baker, and K. Mizuuchi DNase protection analysis of the stable synaptic complexes involved in Mu transposition Proc. Natl. Acad. Sci. U.S.A. 88 1991 9031 9035
26. J.M. Morgan, G.F. Hatfull, S. Casjens, and R.W. Hendrix Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus J. Mol. Biol. 317 2001 337 359
27. C. Nakayama, D.B. Treplow, and R.M. Harshey Structural domains in phage Mu transposase identification of the site-specific DNA-binding domain Proc. Natl. Acad. Sci. U.S.A. 80 1987 1809 1813
28. P. Rice, and K. Mizuuchi Structure of the bacteriophage Mu transposase core: a common structural motif for DNA transposition Cell 82 1995 209 220
29. J. Sambrook, E.F. Fritsch, and T. Maniatis Molecular Cloning: A Laboratory Manual 2nd ed. 1989 Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
30. R. Sandaltzopoulos, and P.B. Becker Solid-phase DNase I footprinting A. Travers M. Buckle DNA-Protein Interactions. Practical approach 1991 Oxford Univ. Press Oxford 151 159
31. H. Savilahti, P.A. Rice, and K. Mizuuchi The phage Mu transpososome core: DNA requirements for assembly and function EMBO J. 14 1995 4893 4903
32. S. Schumacher, R.T. Clubb, M. Cai, K. Mizuuchi, G.M. Clore, and A.M. Groenenborn Solution structure of the Mu end DNA-binding Iβ subdomain of phage Mu transpososome: modular DNA recognition by two tethered domains EMBO J. 16 1997 7532 7541
33. N. Symonds, A. Touissaint, P. Van de Putte, and M. Howe Phage Mu 1987 Cold Spring Harbor Laboratory Cold Spring Harbor, NY
34. R. Virkola, K. Lähteenmäki, T. Eberhard, P. Kuusela, L. van Alphen, M. Ullberg, and T.K. Korhonen Interaction of Haemophilus influenzae with the mammalian extracellular matrix J. Infect. Dis. 173 1996 1137 1147
35. P.W. Wang, L. Chu, and D.S. Guttman Complete sequence and evolutionary genomic analysis of the Pseudomonas aeruginosa transposable bacteriophage D3112 J. Bacteriol. 186 2004 400 410
36. A. Zou, P.C. Leung, and R.M. Harshey Transposase contacts with Mu DNA ends J. Biol. Chem. 266 1991 20476 20482