Chromohalobacter sarecensis sp. nov., a psychrotolerant moderate halophile isolated from the saline Andean region of Bolivia

International Journal of Systematic and Evolutionary Microbiology

Volumn 54, Issue 6, 2004, Pages 1921-1926

  Quillaguamán, Jorge ^a,b   Delgado, Osvaldo ^a,c   Mattiasson, Bo ^a   Hatti Kaul, Rajni ^a  

^a LUND UNIVERSITY   (Sweden)

^b UNIVERSIDAD MAYOR DE SAN SIMÓN   (Bolivia)

^c PLANTA PILOTO DE PROCESOS INDUSTRIALES MICROBIOLÓGICOS PROIMI CONICET   (Argentina)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CARBOHYDRATE; CATALASE; CYTOSINE; DEAMINASE; GENOMIC DNA; GUANINE; HYDROGEN SULFIDE; INDOLE; NITRATE; OXIDOREDUCTASE; RNA 16S; SODIUM CHLORIDE; TRYPTOPHAN;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; BOLIVIA; CARBON SOURCE; CHROMOHALOBACTER CANADENSIS; CHROMOHALOBACTER SARECENSIS; DNA DNA HYBRIDIZATION; ENZYME ACTIVITY; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; HALOPHILIC BACTERIUM; HETEROTROPHY; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PRIORITY JOURNAL; PSEUDOMONAS; PSEUDOMONAS BEIJERINCKII; TEMPERATURE; TYPE STRAIN;

AMINO ACID OXIDOREDUCTASES; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BOLIVIA; CARBOHYDRATE METABOLISM; CATALASE; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; GENTIAN VIOLET; HALOMONADACEAE; HYDROGEN SULFIDE; HYDROGEN-ION CONCENTRATION; INDOLES; L-AMINO ACID OXIDASE; MOLECULAR SEQUENCE DATA; MOVEMENT; NUCLEIC ACID HYBRIDIZATION; OXIDOREDUCTASES; PHENAZINES; PHYLOGENY; PSEUDOMONAS; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SALINE SOLUTION, HYPERTONIC; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; TEMPERATURE;

BACTERIA (MICROORGANISMS); CHROMOHALOBACTER; CHROMOHALOBACTER CANADENSIS; NEGIBACTERIA; PSEUDOMONAS; PSEUDOMONAS BEIJERINCKII;

EID: 9744263194     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63153-0     Document Type: Article

References (27)

1. Anzai, Y., Kim, H., Park, J. Y., Wakabayashi, H. & Oyaizu, H. (2000). Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. Int J Syst Evol Microbiol 50, 1563-1589.
2. Arahal, D. R., Garcia, M. T., Ludwig, W., Schleifer, K. H. & Ventosa, A. (2001a). Transfer of Halomonas canadensis and Halomonas israelensis to the genus Chromohalobacter as Chromohalobacter canadensis comb. nov. and Chromohalobacter israelensis comb. nov. Int J Syst Evol Microbiol 51, 1443-1448.
3. Arahal, D. R., García, M. T., Vargas, C., Cinovas, D., Nieto, J. J. & Ventosa, A. (2001b). Chromohalobacter salexigens sp. nov., a moderately halophilic species that includes Halomonas elongata DSM 3043 and ATCC 33174. Int J Syst Evol Microbiol 51, 1457-1462.
4. Arahal, D. R., Ludwig, W., Schleifer, K. H. & Ventosa, A. (2002). Phylogeny of the family Halomonadaceae based on 23S and 16S rDNA sequence analyses. Int J Syst Evol Microbiol 52, 241-249.
5. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
6. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
7. Escara, J. F. & Hutton, J. R. (1980). Thermal stability and renaturation of DNA in dimethyl sulphoxide solutions: acceleration of the renaturation rate. Biopolymers 19, 1315-1327.
8. Huss, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
9. Huval, J. H., Latta, R., Wallace, R., Kushner, D. J. & Vreeland, R. H. (1995). Description of two new species of Halomonas: Halomonas israelensis sp. nov. and Halomonas canadensis sp. nov. Can J Microbiol 41, 1124-1131.
10. Jahnke, K D. (1992). Basic computer program for evaluation of spectroscopic DNA renaturation data from GILFORD System 2600 spectrometer on a PC/XT/AT type personal computer. J Microbiol Methods 15, 61-73.
11. Johnson, J. L. (1994). Similarity analysis of DNAs. In Methods for General and Molecular Bacteriology, pp. 655-682. Edited by P. Gerhart, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
12. Kersters, K., Ludwig, W., Vancanneyt, M., De Vos, P., Gillis, M. & Schleifer, K. H. (1996). Recent changes in the classification of the pseudomonads: an overview. Syst Appl Microbiol 19, 465-477.
13. Maidak, B. L., Cole, J. R., Lilburn, T. G. & 9 other authors (2000). The RDP (Ribosomal Database Project) continues. Nucleic Acids Res 28, 173-174.
14. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39 159-167.
15. Morita, R. Y. (1975). Psychrophilic bacteria. Bacterial Rev 39, 144-167.
16. Oren, A. (2002). Diversity of halophilic microorganisms: environments, phylogeny, physiology, and applications. J Ind Microbiol Biotechnol 28, 56-63.
17. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
18. Sánchez-Porro, C., Martín, S., Mellado, E. & Ventosa, A. (2003). Diversity of moderately halophilic bacteria producing extracellular hydrolytic enzymes. J Appl Microbiol 94 295-300.
19. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology pp. 611-651. Edited by P. Gerhart, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
20. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
21. Ventosa, A., Quesada, E., Rodriguez-Valera, F., Ruiz-Berraquero, F. & Ramos-Cormenzana, A. (1982). Numerical taxonomy of moderately halophilic Gram-negative rods. J Gen Microbiol 128 1959-1968.
22. Ventosa, A., Gutierrez, M. C., García, M. T. & Ruiz-Berraquero, F. (1989). Classification of " Chromobacterium marismortui" in a new genus, Chromohalobacter gen. nov., as Chromohalobacter marismortui comb. nov., nom. rev. Int J Syst Bacteriol 39, 382-386.
23. Ventosa, A., Nieto, J. J. & Oren, A. (1998). Biology of moderately halophilic aerobic bacteria. Microbiol Mol Biol Rev 62, 504-544.
24. Vreeland, R. H. (1987). Mechanisms of halotolerance in microorganisms. Crit Rev Microbiol 14, 311-356.
25. Vreeland, R. H., Litchfield, C. D., Martin, E. L. & Elliot, E. (1980). Halomonas elongata, a new genus and species of extremely salt-tolerant bacteria. Int J Syst Bacteriol 30, 485-495.
26. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
27. Weisburg, W. G., Barns, S. M., Pelletier, D. & Lane, D. J. (1991). Ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.