Phylogenetic relationships of finches and allies based on nuclear and mitochondrial DNA

Molecular Phylogenetics and Evolution

Volumn 34, Issue 1, 2005, Pages 97-105

  Van Der Meij, M A A ^a   De Bakker, M A G ^a   Bout, R G ^a  

^a LEIDEN UNIVERSITY   (Netherlands)

Author keywords

Fibrinogen intron 7; Cytochrome b; Estrildidae; Fringillidae; Passeroidea

Indexed keywords

CYTOCHROME B; FIBRINOGEN; MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; CELL NUCLEUS; FINCH; GENETIC VARIABILITY; GENETICS; MITOCHONDRION; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE ALIGNMENT;

ANIMALS; BASE SEQUENCE; CELL NUCLEUS; CYTOCHROMES B; DNA, MITOCHONDRIAL; FIBRINOGEN; FINCHES; MITOCHONDRIA; PHYLOGENY; SEQUENCE ALIGNMENT; VARIATION (GENETICS);

ESTRILDIDAE; FRINGILLA; FRINGILLIDAE; PASSERIDAE; PASSERIFORMES; PASSEROIDEA; PLOCEINAE;

EID: 9744222951     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ympev.2004.09.006     Document Type: Article

References (39)

1. L.M. Allende, I. Ruboi, J. Guillén, V. Ruiz-del-Valle, J. Guillen, J. Martinez-Laso, and E. Lowy The old world sparrows (Genus Passer): Phylogeography and their relative abundance of nuclear mtDNA pseudogenes J. Mol. Evol. 53 2001 144 154
2. A. Arnaiz-Villena, J. Guillén, V. Ruiz-del-Valle, E. Lowy, J. Zamora, P. Varela, D. Stefani, and L.M Allende Phylogeography of crossbills, bullfinches, grosbeaks, and rosefinches Cell. Mol. Life Sci. 58 8 2001 1159 1166
3. F.K. Barker, and S.M. Lanyon The impact of parsimony weighting schemes on inferred relationships among Toucans and neotropical Barbets (Aves: Piciformes) Mol. Phylogenet. Evol. 15 2 2000 215 234
4. W.J. Beecher A phylogeny of the oscines Auk 70 1953 270 333
5. G.D. Bentz The appendicular myology and phylogenetic relationships of the Ploceidae and Estrildidae (Aves: Passeriformes) Bull. Carnegie Mus. Nat. Hist. 15 1979 1 25
6. L. Christidis Phylogeny and systematics of estrildine finches and their relationships to other seed-eating passerines Emu 87 1987 119 123
7. L. Christidis Chromosomal evolution within the family Estrildidae (Aves). III. The Estrildae (waxbill finches) Genetica 72 1987 93 100
8. P. Clement, A. Harris, and J. Davis Finches and sparrows: An identification guide 1993 Christopher Helm London
9. J. Delacour A revision of the subfamily Estrildinae of the family Ploceidae Zoologica 28 1943 69 86
10. K. Dolphin, R. Belshaw, C.D.L. Orme, and D.L.J. Quicke Noise and incongruence: interpreting results of the incongruence lenghth difference test Mol. Phylogenet. Evol. 17 3 2000 401 406
11. P.G.P. Ericson, M. Irestedt, and U.S. Johansson Evolution, biogeography, and patterns of diversification in passerine birds J. Avian Biol. 34 1 2003 3 15
12. J. Fehrer Conflicting character distribution within different data sets on cardueline finches. artifact or history? Mol. Biol. Evol. 13 1 1996 7 20
13. W. Fiedler Beiträge zur Morphologie der Kiefermuskulatur der Oscines Zool. Jahrb. Abt. Anat. Ontog. Tiere 71 1951 235 288
14. D. Goodwin Estrildid finches of the world 1982 British Museum (Natural History) London
15. J.G. Groth Molecular phylogenetics of finches and sparrows: consequences of character state removal in cytochrome b sequences Mol. Phylogenet. Evol. 10 3 1998 377 390
16. R.A. Hinde A comparative study of the courtship of certain finches (Fringillidae) Ibis 98 1956 1 23
17. J.P. Huelsenbeck, and F. Ronquist MRBAYES: Bayesian inference of phylogenetic trees Bioinformatics 17 8 2001 754 755
18. F. Jeanmougin, J.D. Thompson, M. Gouy, D.G. Higgins, and T.J. Gibson Multiple sequence alignment with ClustalX Trends Biochem. Sci. 23 1998 403 405
19. J. Klicka, K.P. Johnson, and S.M. Lanyon New world nine-primaried oscine relationships: constructing a mitochondrial DNA framework Auk 117 2 2000 321 336
20. P. Kunkel Die Stammesgeschichte der Prachtfinken (Estrildidae) im Lichte des Brutparasitismus der Witwen (Viduinae) Ardea 57 1969 173 181
21. E. Mayr, R.J. Andrew, and R.A. Hinde Sie systematische Stellung der Gattung Fringilla J. Ornithol. 97 1956 258 273
22. E. Mayr The sequence of genera in the Estrildidae (Aves) Breviora 287 1968 1 14
23. D. Posada, and K.A. Crandall Modeltest: testing the model of DNA substitution Bioinformatics 14 1998 817 818
24. T.M. Prychitko, and W.S. Moore The utility of DNA sequences of an intron from the β-fibrinogen gene in phylogenetic analysis of woodpeckers (Aves: Picidae) Mol. Phylogenet. Evol. 8 2 1997 193 204
25. C.G. Sibley, and J.E. Ahlquist Phylogeny and Classification of Birds: A Study in Molecular Evolution 1990 Yale University Press New Haven, London
26. C.G. Sibley, and B.L. Monroe Distribution and Taxonomy of Birds of the World 1990 Yale University press New Haven
27. C.G. Sibley, and B.L. Monroe Supplement to Distribution and Taxonomy of Birds of the World 1993 Yale University press New Haven
28. M.D. Sorenson, and T.W. Quinn Numts: A challenge for avian systematics and population biology Auk 115 1 1998 214 221
29. M.D. Sorenson, J.C. Ast, D.E. Dimcheff, T. Yuri, and D.P. Mindell Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates Mol. Phylogenet. Evol. 12 2 1999 105 114
30. M.D. Sorenson, and R.B. Payne A single ancient origin of brood parasitism in african finches: implications for host-parasite coevolution Evolution 55 12 2001 2550 2567
31. H. Steiner Klassifikation der Prachtfinken, Spermestidae, auf Grund der Rachenzeichnung ihrer Nestlinge J. Ornithol. 101 1960 92 112
32. N. Stempel Proteinvariation und taxonomie körnerfressender Singvögel Z. Zool. Syst. Evol. forsch. 25 1987 281 308
33. D.L. Swofford "PAUP, Phylogenetic analysis using parsimony (* and other methods), version 4 1998 Simauer Associates Sunderland, MA
34. P.P. Sushkin On the Fringillidae and allied groups Bull. Brit. Orn. Club 45 1924 36 41
35. H.A. Thomassen, A.T. Wiersema, M.A.G. de Bakker, P. de Knijff, E. Hetebrij, and G.D.E. Povel A new phylogeny of swiftlets (Aves; apodidae based on cytochrome-b DNA) Mol. Phylogenet. Evol. 29 1 2003 86 93
36. J.D. Thompson, T.J. Gibson, T.J.F. Plewniak, F. Jeanmougin, and D.G. Higgins The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 24 1997 4876 4882
37. H.B. Tordoff Relationships in the New World nine-primaried oscines Auk 71 1954 273 284
38. H.E. Wolters Zur stammesgeschichte australischer Prachtfinken Trochilus 6 1985 2 40
39. T. Yuri, and D.P. Mindell Molecular phylogenetic analysis of Fringillidae, New world nine-primaried oscines (Aves: Passeriformes) Mol. Phylogenet. Evol. 23 2002 229 243