Crystal Structure of γ-Glutamyl Phosphate Reductase (TM0293) from Thermotoga maritima at 2.0 Å Resolution

Proteins: Structure, Function and Genetics

Volumn 54, Issue 1, 2004, Pages 157-161

  Page, Rebecca ^a   Nelson, Michael S ^a   Von Delft, Frank ^a   Elsliger, Marc André ^a   Canaves, Jaume M ^a,d   Brinen, Linda S ^a,b   Dai, Xiaoping ^a   Deacon, Ashley M ^a,b   Floyd, Ross ^a,b   Godzik, Adam ^a,d   Grittini, Carina ^a   Grzechnik, Slawomir K ^a,d   Jaroszewski, Lukasz ^a,d   Klock, Heath E ^a,c   Koesema, Eric ^a,c   Kovarik, John S ^a,b   Kreusch, Andreas ^a,c   Kuhn, Peter ^a,b   Lesley, Scott A ^a,c   McMullan, Daniel ^a,c   McPhillips, Timothy M ^a,b   Miller, Mitchell D ^a,b   Morse, Andrew ^a,d   Moy, Kin ^a   Ouyang, Jie ^a,d   Robb, Alyssa ^a,c   Rodrigues, Kevin ^a,c   Schwarzenbacher, Robert ^a,d   Spraggon, Glen ^a,c   Stevens, Raymond C ^a   Van Den Bedem, Henry ^a,b   Velasquez, Jeff ^a   Vincent, Juli ^a,c   Wang, Xianhong ^a,d   West, Bill ^a,d   Wolf, Guenter ^a,b   Hodgson, Keith O ^a,b   Wooley, John ^a,d,e   Wilson, Ian A ^a   more..

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

^c GENOMICS INSTITUTE OF THE NOVARTIS RESEARCH FOUNDATION   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALDEHYDE DEHYDROGENASE; BACTERIAL ENZYME; BACTERIAL PROTEIN; GLUTAMATE GAMMA SEMIALDEHYDE DEHYDROGENASE; GLUTAMATE SEMIALDEHYDE DEHYDROGENASE; GLUTAMATE-SEMIALDEHYDE DEHYDROGENASE; OXIDOREDUCTASE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; AUTOMATION; CHEMICAL STRUCTURE; CHEMISTRY; CRYSTAL STRUCTURE; ENZYME STRUCTURE; ENZYMOLOGY; MOLECULAR GENETICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN FAMILY; THERMOTOGA MARITIMA; X RAY CRYSTALLOGRAPHY;

ALDEHYDE OXIDOREDUCTASES; AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CRYSTALLOGRAPHY, X-RAY; GLUTAMATE-5-SEMIALDEHYDE DEHYDROGENASE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; THERMOTOGA MARITIMA;

BACTERIA (MICROORGANISMS); THERMOTOGA; THERMOTOGA MARITIMA;

EID: 9144274340     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.10562     Document Type: Article

References (22)

1. Hayzer DJ, Moses V. The enzymes of proline biosynthesis in Escherichia coli: their molecular weights and the problem of enzyme aggregation. Biochem J 1978;173:219-228.
2. Yoshiba Y, Kiyosue T, Nakashima K, Yamaguchi-Shinozaki K, Shinozaki K. Regulation of levels of proline as an osmolyte in plants under water stress. Plant Cell Physiol 1997;38:1095-1102.
3. Kamoun P, Aral B, Saudubray JM. A new inherited metabolic disease: A-1-pyrroline 5-carboxylate synthetase deficiency. Bull Acad Natl Med 1998;182:131-137.
4. Perozich J, Nicholas H, Wang BC, Lindahl R, Hempel J. Relationships within the aldehyde dehydrogenase extended family. Protein Sci 1999;8:137-146.
5. Lesley SA, Kuhn P, Godzik A, Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A 2002;99:11664-11669.
6. Collaborative Computational Project Number 4. The CCP4 Suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 1994;50:760-763.
7. Laskowski RA, MacArthur MW, Moss DS, Thornton JM. PRO-CHECK: a program to check the stereochemical quality of protein structures. J Appl Crystallogr 1993;26:283-291.
8. Darby NJ, Creighton TE. Protein structure. New York: IRL Press at Oxford University Press; 1993.
9. Holm L, Sander C. Dali: A network tool for protein structure comparison. Trends Biochem Sci 1995;20:478-480.
10. Liu ZJ, Sun YJ, Rose J, Chung YJ, Hsiao CD, Chang WR, Kuo I, Perozich J, Lindahl R, Hempel J, Wang BC. The first structure of an aldehyde dehydrogenase reveals novel interactions between NAD and the Rossmann fold. Nat Struct Biol 1997;4:317-326.
11. Ahvazi B, Coulombe R, Delarge M, Vedadi M, Zhang L, Meighen E, Vrielink A. Crystal structure of the NADP+-dependent Vibrio harveyi: structural implications for affinity. Biochem J 2000;349:853-861.
12. Cobessi D, Tete-Favier F, Marchal S, Azza S, Branlant G, Aubry A. Apo and holo crystal structures of an NADP-dependent aldehyde dehydrogenase from Streptococcus mutans. J Mol Biol 1999;290:161-173.
13. Steinmetz CG, Xie P, Weiner H, Hurley TD. Structure of mitochondrial aldehyde dehydrogenase: the genetic component of ethanol aversion. Structure 1997;5:701-711.
14. Baich A. Proline synthesis in Escherichia coli: a proline-inhibitable glutamic acid kinase. Biochim Biophys Acta 1969;192:462-467.
15. Santarsiero BD, Yegian DT, Lee CC, Spraggon G, Gu J, Scheibe D, Uber DC, Cornell EW, Nordmeyer RA, Kolbe WF, Jin J, Jones AL, Jaklevic JM, Schultz PG, Stevens RC. An approach to rapid protein crystallization using nanodroplets. J Appl Crystallogr 2002;35:278-281.
16. Otwinowski Z, Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 1997;276:307-362.
17. Terwilliger TC, Berendzen J. Automated structure solution for MIR and MAD. Acta Crystallogr D Biol Crystallogr 1999;55:849-861.
18. Perrakis A, Morris R, Lamzin VS. Automated protein model building combined with iterative structure refinement. Nat Struct Biol 1999;6:458-463.
19. Brünger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL. Crystallography & NMR System: a new software suite for macromolecular structure determination. Acta Crystallogr D Biol Crystallogr 1998;54:905-921.
20. Jones TA, Zou J-Y, Cowan SW, Kjeldaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr D Biol Crystallogr 1991;47:110-119.
21. Murshudov GN, Vagin AA, Dodson EJ. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D Biol Crystallogr 1997;53:240-255.
22. McRee DE. XtalView/Xfit-a versatile program for manipulating atomic coordinates and electron density. J Struct Biol 1999;125:156-165.