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The Human Genome Project: an update
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0028806048
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Quantitative monitoring of gene expression patterns with a complementary DNA microarray
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0028301313
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How many genes in the human genome?
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PID: 7920649, COI: 1:CAS:528:DyaK2cXltVWjsrY%3D
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Fields, C.1
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0016345602
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Three abundance classes in HeLa cell messenger RNA
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PID: 4855195, COI: 1:CAS:528:DyaE2MXjvFOmsg%3D%3D
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0035097430
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Profiling and verification of gene expression patterns in normal and malignant human prostate tissues by cDNA microarray analysis
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PID: 11326315, COI: 1:CAS:528:DC%2BD3MXis1agu7s%3D
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Chaib H, Cockrell EK, Rubin MA, Macoska JA: Profiling and verification of gene expression patterns in normal and malignant human prostate tissues by cDNA microarray analysis. Neoplasia 2001, 3:43–52. DOI: 10.1038/sj.neo.7900126
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Neoplasia
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Chaib, H.1
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0034189472
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Molecular profiling of clinical tissues specimens: feasibility and applications
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PID: 11272889, COI: 1:CAS:528:DC%2BD3cXjvVCmsLw%3D, An excellent review of the resources available for DNA microarray and complementary technologies for molecular studies of the biological basis of prostate cancer
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Emmert-Buck MR, Strausberg RL, Krizman DB, et al.: Molecular profiling of clinical tissues specimens: feasibility and applications. J Mol Diagn 2000, 2:60–66. An excellent review of the resources available for DNA microarray and complementary technologies for molecular studies of the biological basis of prostate cancer.
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J Mol Diagn
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Emmert-Buck, M.R.1
Strausberg, R.L.2
Krizman, D.B.3
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8
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0034624007
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EGR1 target genes in prostate carcinoma cells identified by microarray analysis
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PID: 10984481, COI: 1:CAS:528:DC%2BD3cXoslymt7w%3D
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Svaren J, Ehrig T, Abdulkadir SA, et al.: EGR1 target genes in prostate carcinoma cells identified by microarray analysis. J Biol Chem 2000, 275:38524–38531. DOI: 10.1074/jbc.M005220200
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J Biol Chem
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Svaren, J.1
Ehrig, T.2
Abdulkadir, S.A.3
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9
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0035120266
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Laminin-5-mediated gene expression in human prostate carcinoma cells
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PID: 11241759, COI: 1:CAS:528:DC%2BD3MXhslKgt74%3D
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Calaluce R, Kunkel MW, Watts GS, et al.: Laminin-5-mediated gene expression in human prostate carcinoma cells. Mol Carcinog 2001, 30:119–129. DOI: 10.1002/1098-2744(200102)30:2<119::AID-MC1020>3.0.CO;2-N
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Mol Carcinog
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Calaluce, R.1
Kunkel, M.W.2
Watts, G.S.3
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10
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0034986503
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Up-regulation of TRPM-2, MMP-7 and ID-1 during sex hormone-induced prostate carcinogenesis in the Noble rat
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PID: 11375906, COI: 1:CAS:528:DC%2BD3MXktlSksL0%3D
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Ouyang XS, Wang X, Lee DT, et al.: Up-regulation of TRPM-2, MMP-7 and ID-1 during sex hormone-induced prostate carcinogenesis in the Noble rat. Carcinogenesis 2001, 22:965–973. DOI: 10.1093/carcin/22.6.965
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Carcinogenesis
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Ouyang, X.S.1
Wang, X.2
Lee, D.T.3
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11
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0035874882
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Prostate carcinomas developing in transgenic rats with SV40 T antigen expression under probasin promoter control are strictly androgen dependent
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PID: 11406539, COI: 1:CAS:528:DC%2BD3MXks1GrtLk%3D
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Asamoto M, Hokaiwado N, Cho YM, et al.: Prostate carcinomas developing in transgenic rats with SV40 T antigen expression under probasin promoter control are strictly androgen dependent. Cancer Res 2001, 61:4693–4700.
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Cancer Res
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Asamoto, M.1
Hokaiwado, N.2
Cho, Y.M.3
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12
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0034326788
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Dysregulated expression of androgen-responsive and nonresponsive genes in the androgen-independent prostate cancer xenograft model CWR22-R1
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PID: 11085537, COI: 1:CAS:528:DC%2BD3cXotV2lsb0%3D
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Amler LC, Agus DB, LeDuc C, et al.: Dysregulated expression of androgen-responsive and nonresponsive genes in the androgen-independent prostate cancer xenograft model CWR22-R1. Cancer Res 2000, 60:6134–6141.
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Cancer Res
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Amler, L.C.1
Agus, D.B.2
LeDuc, C.3
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13
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0035866347
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Prostate short-chain dehydrogenase reductase 1 (PSDR1): a new member of the short-chain steroid dehydrogenase/reductase family highly expressed in normal and neoplastic prostate epithelium
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PID: 11245473, COI: 1:CAS:528:DC%2BD3MXhvVelur0%3D
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Lin B, White JT, Ferguson C, et al.: Prostate short-chain dehydrogenase reductase 1 (PSDR1): a new member of the short-chain steroid dehydrogenase/reductase family highly expressed in normal and neoplastic prostate epithelium. Cancer Res 2001, 61:1611–1618.
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Cancer Res
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Lin, B.1
White, J.T.2
Ferguson, C.3
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14
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0032952228
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PEDB: the Prostate Expression Database
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PID: 9847181, COI: 1:CAS:528:DyaK1MXpsVKisw%3D%3D
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Hawkins V, Doll D, Bumgarner R, et al.: PEDB: the Prostate Expression Database. Nucleic Acids Res 1999, 27:204–208. DOI: 10.1093/nar/27.1.204
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Hawkins, V.1
Doll, D.2
Bumgarner, R.3
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15
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84984934707
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The genetics of cancer—a 3D model
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PID: 9915499, COI: 1:STN:280:DyaK1M7ht1Ojtw%3D%3D
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Cole KA, Krizman DB, Emmert-Buck MR: The genetics of cancer—a 3D model. Nat Genet 1999, 21(suppl 1):38–41. DOI: 10.1038/4466
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Cole, K.A.1
Krizman, D.B.2
Emmert-Buck, M.R.3
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16
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0034026399
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Microarray-based expression profiling in prostate tumors
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PID: 10757075, COI: 1:CAS:528:DC%2BD3cXisFOjsrk%3D
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Elek J, Park KH, Narayanan R: Microarray-based expression profiling in prostate tumors. In Vivo 2000, 14:173–182.
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In Vivo
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Elek, J.1
Park, K.H.2
Narayanan, R.3
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17
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0035866786
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Activated in prostate cancer: a PDZ domain-containing protein highly expressed in human primary prostate tumors
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PID: 11289102, COI: 1:CAS:528:DC%2BD3MXisVSlur8%3D
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Chaib H, Rubin MA, Mucci NR, et al.: Activated in prostate cancer: a PDZ domain-containing protein highly expressed in human primary prostate tumors. Cancer Res 2001, 61:2390–2394.
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Cancer Res
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Chaib, H.1
Rubin, M.A.2
Mucci, N.R.3
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18
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0035341589
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Identification of differentially expressed genes in organ-confined prostate cancer by gene expression array
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PID: 11340636, COI: 1:CAS:528:DC%2BD3MXjslSls7g%3D
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Chetcuti A, Margan S, Mann S, et al.: Identification of differentially expressed genes in organ-confined prostate cancer by gene expression array. Prostate 2001, 47:132–140. DOI: 10.1002/pros.1056
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Prostate
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Chetcuti, A.1
Margan, S.2
Mann, S.3
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19
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0035363734
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Identification of potential diagnostic markers of prostate cancer and prostatic intraepithelial neoplasia using cDNA microarray
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PID: 11384102, COI: 1:CAS:528:DC%2BD3MXltFaru7c%3D, A comprehensive study involving DNA microarray analysis on clinical samples and successful identification of potential prostate/ PIN-specific markers
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Bull JH, Ellison G, Patel A, et al.: Identification of potential diagnostic markers of prostate cancer and prostatic intraepithelial neoplasia using cDNA microarray. Br J Cancer 2001, 84:1512–1519. A comprehensive study involving DNA microarray analysis on clinical samples and successful identification of potential prostate/ PIN-specific markers. DOI: 10.1054/bjoc.2001.1816
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(2001)
Br J Cancer
, vol.84
, pp. 1512-1519
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Bull, J.H.1
Ellison, G.2
Patel, A.3
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20
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0034917030
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New molecular approaches to tissue analysis
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PID: 11457937, COI: 1:CAS:528:DC%2BD3MXlsVKrt7o%3D, This paper presents some laser capture microdissection and RNA amplification as complementary technologies to DNA microarray
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Nagle RB: New molecular approaches to tissue analysis. J Histochem Cytochem 2001, 49:1063–1064. This paper presents some laser capture microdissection and RNA amplification as complementary technologies to DNA microarray.
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(2001)
J Histochem Cytochem
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Nagle, R.B.1
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21
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0034654176
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Identification of differentially expressed genes in human prostate cancer using subtraction and microarray
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PID: 10749139, COI: 1:CAS:528:DC%2BD3cXit1aqtLc%3D, An innovative combination of technologies to allow for identification of prostate- and prostate cancer-specific biomarkers
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Xu J, Stolk JA, Zhang X, et al.: Identification of differentially expressed genes in human prostate cancer using subtraction and microarray. Cancer Res 2000, 60:1677–1682. An innovative combination of technologies to allow for identification of prostate- and prostate cancer-specific biomarkers.
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(2000)
Cancer Res
, vol.60
, pp. 1677-1682
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Xu, J.1
Stolk, J.A.2
Zhang, X.3
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22
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17044450862
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Development of a prostate cDNA microarray and statistical gene expression analysis package
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PID: 10820484, COI: 1:CAS:528:DC%2BD3cXjtFSjsLw%3D
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Carlisle AJ, Prabhu VV, Elkahloun A, et al.: Development of a prostate cDNA microarray and statistical gene expression analysis package. Mol Carcinog 2000, 28:12–22. DOI: 10.1002/(SICI)1098-2744(200005)28:1<12::AID-MC3>3.0.CO;2-Q
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Mol Carcinog
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Carlisle, A.J.1
Prabhu, V.V.2
Elkahloun, A.3
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23
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0032767783
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Chromosomal basis of adenocarcinoma of the prostate
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PID: 10434955, COI: 1:STN:280:DyaK1MzmtlyisQ%3D%3D
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Verma RS, Manikal M, Conte RA, Godec CJ: Chromosomal basis of adenocarcinoma of the prostate. Cancer Invest 1999, 17:441–447. DOI: 10.3109/07357909909021436
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Cancer Invest
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Verma, R.S.1
Manikal, M.2
Conte, R.A.3
Godec, C.J.4
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24
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0035235717
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The role of molecular genetics in chemoprevention studies of prostate cancer
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PID: 11220660, COI: 1:CAS:528:DC%2BD3MXhslKjsb8%3D
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Ross RK: The role of molecular genetics in chemoprevention studies of prostate cancer. IARC Sci Publ 2001, 154:207–213.
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IARC Sci Publ
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Ross, R.K.1
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25
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0032524383
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Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome
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PID: 9582121, COI: 1:CAS:528:DyaK1cXjt1egsb0%3D
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Wang DG, Fan JB, Siao CJ, et al.: Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science 1998, 280:1077–1082. DOI: 10.1126/science.280.5366.1077
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Wang, D.G.1
Fan, J.B.2
Siao, C.J.3
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26
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84984933234
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High density synthetic oligonucleotide arrays
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PID: 9915496, COI: 1:CAS:528:DyaK1MXltlWhsA%3D%3D, The authors review the technology and applications of situ synthetic oligonucleotide microarray. Applications of DNA microarrays for large-scale genotyping and detection of gene mutation are well described and discussed this article
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Lipshutz RJ, Fodor SP, Gingeras TR, Lockhart DJ: High density synthetic oligonucleotide arrays. Nat Genet 1999, 21:20–24. The authors review the technology and applications of in situ synthetic oligonucleotide microarray. Applications of DNA microarrays for large-scale genotyping and detection of gene mutation are well described and discussed in this article. DOI: 10.1038/4447
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(1999)
Nat Genet
, vol.21
, pp. 20-24
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Lipshutz, R.J.1
Fodor, S.P.2
Gingeras, T.R.3
Lockhart, D.J.4
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27
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0033883416
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Genetic alterations in human prostate cancer: a review of current literature
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PID: 10928125, COI: 1:CAS:528:DC%2BD3cXlvFCrur0%3D
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Ozen M, Pathak S: Genetic alterations in human prostate cancer: a review of current literature. Anticancer Res 2000, 20:1905–1912.
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Anticancer Res
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Ozen, M.1
Pathak, S.2
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28
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84984934752
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Resequencing and mutational analysis using oligonucleotide microarrays
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PID: 9915500, COI: 1:CAS:528:DyaK1MXltlWhtA%3D%3D, This paper describes the use of DNA microarray for DNA sequencing studies and its principle
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Hacia JG: Resequencing and mutational analysis using oligonucleotide microarrays. Nat Genet 1999, 21:42–47. This paper describes the use of DNA microarray for DNA sequencing studies and its principle. DOI: 10.1038/4469
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Nat Genet
, vol.21
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Hacia, J.G.1
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29
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0034998193
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Detection of multiple gene amplifications in glioblastoma multiforme using array-based comparative genomic hybridization
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PID: 11351043, COI: 1:CAS:528:DC%2BD3MXkt1Cqtbg%3D
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Hui AB, Lo KW, Yin XL, et al.: Detection of multiple gene amplifications in glioblastoma multiforme using array-based comparative genomic hybridization. Lab Invest 2001, 81:717–723. DOI: 10.1038/labinvest.3780280
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Lab Invest
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Hui, A.B.1
Lo, K.W.2
Yin, X.L.3
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30
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0033818954
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A concise guide to cDNA microarray analysis
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PID: 10997270, COI: 1:CAS:528:DC%2BD3cXmsFWgsb0%3D, This paper outlines the steps of cDNA microarray analysis and discusses each step detail
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Hegde P, Qi R, Abernathy K, et al.: A concise guide to cDNA microarray analysis. Biotechniques 2000, 29:548–556. This paper outlines the steps of cDNA microarray analysis and discusses each step in detail.
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Biotechniques
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Hegde, P.1
Qi, R.2
Abernathy, K.3
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31
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85130792703
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San Jose, CA, January, Different ways to normalize the DNA microarray data are presented and compared. The mathematical computations and principles of data normalization are described
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Yang YH, Dudoit S, Luu P, Speed TP: Normalization for cDNA microarray data. Proceedings of the International Society for Optical Engineering International Biomedical Optics Symposium 2001. San Jose, CA; January 2001. Different ways to normalize the DNA microarray data are presented and compared. The mathematical computations and principles of data normalization are described.
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(2001)
Normalization for Cdna Microarray Data. Proceedings of the International Society for Optical Engineering International Biomedical Optics Symposium
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Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Speed, T.P.4
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32
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0033899865
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Differentially expressed genes in two LNCaP prostate cancer cell lines reflecting changes during prostate cancer progression
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PID: 10950117, COI: 1:CAS:528:DC%2BD3cXmtFOgsrk%3D
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Vaarala MH, Porvari K, Kyllonen A, Vihko P: Differentially expressed genes in two LNCaP prostate cancer cell lines reflecting changes during prostate cancer progression. Lab Invest 2000, 80:1259–1268. DOI: 10.1038/labinvest.3780134
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Lab Invest
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Vaarala, M.H.1
Porvari, K.2
Kyllonen, A.3
Vihko, P.4
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33
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0033657261
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Principal components analysis to summarize microarray experiments: Application to sporulation time series
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Raychaudhuri S, Stuart JM, Altman RB: Principal components analysis to summarize microarray experiments: application to sporulation time series. Pac Symp Biocomput 2000, 455–466.
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Pac Symp Biocomput
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Raychaudhuri, S.1
Stuart, J.M.2
Altman, R.B.3
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34
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0033518877
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Statistical analysis of array expression data as applied to the problem of tamoxifen resistance
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PID: 10070945, COI: 1:STN:280:DyaK1M7mvVCqsQ%3D%3D, This is the first paper using principal component analysis on DNA microarray data to identify the differentially expressed genes related to tamoxifen-resistant breast cancer
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Hilsenbeck SG, Friedrichs WE, Schiff R, et al.: Statistical analysis of array expression data as applied to the problem of tamoxifen resistance. J Natl Cancer Inst 1999, 91:453–459. This is the first paper using principal component analysis on DNA microarray data to identify the differentially expressed genes related to tamoxifen-resistant breast cancer. DOI: 10.1093/jnci/91.5.453
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J Natl Cancer Inst
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Hilsenbeck, S.G.1
Friedrichs, W.E.2
Schiff, R.3
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35
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0032534066
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Gene expression profiling of alveolar rhabdomyosarcoma with cDNA microarrays
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PID: 9823299, COI: 1:CAS:528:DyaK1cXnsFSmsbk%3D
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Khan J, Simon R, Bittner M, et al.: Gene expression profiling of alveolar rhabdomyosarcoma with cDNA microarrays. Cancer Res 1998, 58:5009–5013.
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Cancer Res
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0035874995
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Human prostate cancer and benign prostatic hyperplasia: molecular dissection by gene expression profiling
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PID: 11406537, COI: 1:CAS:528:DC%2BD3MXks1GrtLs%3D
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Luo J, Duggan DJ, Chen Y, et al.: Human prostate cancer and benign prostatic hyperplasia: molecular dissection by gene expression profiling. Cancer Res 2001, 61:4683–4688.
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Cancer Res
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Luo, J.1
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Chen, Y.3
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37
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0035254974
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Gene expression profile changes in initiation and progression of squamous cell carcinoma of esophagus
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PID: 11169949, COI: 1:CAS:528:DC%2BD3MXmsFOkug%3D%3D
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Lu J, Liu Z, Xiong M, et al.: Gene expression profile changes in initiation and progression of squamous cell carcinoma of esophagus. Int J Cancer 2001, 91:288–294. DOI: 10.1002/1097-0215(200002)9999:9999<::AID-IJC1063>3.0.CO;2-S
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Int J Cancer
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Lu, J.1
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Xiong, M.3
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38
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0032441150
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Cluster analysis and display of genome-wide expression patterns
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PID: 9843981, COI: 1:CAS:528:DyaK1cXotVGmurk%3D, The hierarchical clustering was, for the first time, used to analyze DNA microarray data for gene clustering. The authors wrote CLUSTER and TREEVIEW programs that are available to the public
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Eisen MB, Spellman PT, Brown PO, Botstein D: Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A 1998, 95:14863–14868. The hierarchical clustering was, for the first time, used to analyze DNA microarray data for gene clustering. The authors wrote CLUSTER and TREEVIEW programs that are available to the public. DOI: 10.1073/pnas.95.25.14863
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(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 14863-14868
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Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
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39
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0034642307
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Gene expression profiling of primary breast carcinomas using arrays of candidate genes
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PID: 11115842, COI: 1:CAS:528:DC%2BD3MXjt1Wg
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Bertucci F, Houlgatte R, Benziane A, et al.: Gene expression profiling of primary breast carcinomas using arrays of candidate genes. Hum Mol Genet 2000, 9:2981–2991. DOI: 10.1093/hmg/9.20.2981
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Hum Mol Genet
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Bertucci, F.1
Houlgatte, R.2
Benziane, A.3
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40
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0034050902
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Systematic variation in gene expression patterns in human cancer cell lines
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PID: 10700174, COI: 1:CAS:528:DC%2BD3cXhvFaqtrg%3D
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Ross DT, Scherf U, Eisen MB, et al.: Systematic variation in gene expression patterns in human cancer cell lines. Nat Genet 2000, 24:227–235. DOI: 10.1038/73432
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Nat Genet
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Ross, D.T.1
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Eisen, M.B.3
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41
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0034710876
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Coupled two-way clustering analysis of gene microarray data
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PID: 11035779, COI: 1:CAS:528:DC%2BD3cXnvVSgtL4%3D
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Getz G, Levine E, Domany E: Coupled two-way clustering analysis of gene microarray data. Proc Natl Acad Sci U S A 2000, 97:12079–12084. DOI: 10.1073/pnas.210134797
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