Genetic diversity in clinical isolates of Mycobacterium avium complex from Guinea-Bissau, West Africa

Microbes and Infection

Volumn 6, Issue 14, 2004, Pages 1320-1325

  Koivula, Tuija ^a   Cristea Fernström, Mariana ^b   Chryssanthou, Erja ^b   Petrini, Björn ^b   Källenius, Gunilla ^a,c  

^a SWEDISH INSTITUTE FOR INFECTIOUS DISEASE CONTROL   (Sweden)

^b KAROLINSKA UNIVERSITY HOSPITAL   (Sweden)

^c KAROLINSKA INSTITUTE   (Sweden)

Author keywords

16S rRNA sequencing; DT1; DT6; Guinea Bissau; mig gene; Molecular characterisation; Mycobacterium avium complex

Indexed keywords

RIBOSOME RNA;

AFRICA; ARTICLE; BACTERIUM CULTURE; BACTERIUM ISOLATE; BIOTOPE; CORRELATION ANALYSIS; GENE SEQUENCE; GENETIC VARIABILITY; HUMAN; HYBRIDIZATION; MACROPHAGE; MAJOR CLINICAL STUDY; MOLECULAR BIOLOGY; MYCOBACTERIUM AVIUM; MYCOBACTERIUM INTRACELLULARE AVIUM; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; SPUTUM ANALYSIS;

DNA, BACTERIAL; DNA, RIBOSOMAL; EPIDEMIOLOGY, MOLECULAR; GENES, BACTERIAL; GENES, RRNA; GUINEA-BISSAU; HUMANS; MYCOBACTERIUM AVIUM COMPLEX; MYCOBACTERIUM AVIUM-INTRACELLULARE INFECTION; NUCLEIC ACID HYBRIDIZATION; POLYMERASE CHAIN REACTION; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPUTUM; VARIATION (GENETICS);

MYCOBACTERIUM; MYCOBACTERIUM AVIUM; MYCOBACTERIUM AVIUM COMPLEX; MYCOBACTERIUM AVIUM COMPLEX (MAC); MYCOBACTERIUM INTRACELLULARE;

EID: 9144226983     PISSN: 12864579     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.micinf.2004.07.007     Document Type: Article

References (35)

1. D.S. Prince, D.D. Peterson, R.M. Steiner, J.E. Gottlieb, R. Scott, H.L. Israel, W.G. Figueroa, and J.E.N. Fish Infection with Mycobacterium avium complex in patients without predisposing conditions Engl. J. Med. 321 1989 863 868
2. C.B. Inderlied, C.A. Kemper, and L.E. Bermudez The Mycobacterium avium complex Clin. Microbiol. Rev. 6 1993 266 310
3. S.D. Nightingale, L.T. Byrd, P.M. Southern, J.D. Jockusch, S.X. Cal, and B.A. Wyenne Incidence of Mycobacterium avium-intracellulare complex bacteraemia in human immunodeficiency virus-positive patients J. Infect. Dis. 165 1992 1082 1085
4. C.A. Benson, and J.J. Ellner Mycobacterium avium complex infection and AIDS: advances in theory and practice Clin. Infect. Dis. 17 1993 7 20
5. C.F. Gilks, R.J. Brindle, C. Mwachari, B. Batchelor, J. Bwayo, J. Kimari, R.D. Arbeit, and C.F. Von Reyn Disseminated Mycobacterium avium infection among HIV-infected patients in Kenya J. Acquir. Immune Defic. Syndr. Hum. Retrovirol. 1 8 1995 195 198
6. T. Koivula, S. Hoffner, N. Winqvist, A. Nauclér, F. Dias, S. Svenson, R. Norberg, and G. Källenius Mycobacterium avium complex sputum isolates from patients with respiratory symptoms in Guinea Bissau J. Infect. Dis. 173 1996 263 265
7. J.O. Falkinham III Epidemiology of infection by nontuberculous mycobacteria Clin. Microbiol. Rev. 9 1996 177 215
8. P.T. Kent, and G.P. Kubica Public health mycobacteriology. A guide for the level III laboratory 1985 Centers for Disease Control Atlanta
9. C.E. Musial, L.S. Tice, L. Stockman, and G.D. Roberts Identification of mycobacteria from culture by using the Gen-Probe Rapid Diagnostic System for Mycobacterium avium complex and Mycobacterium tuberculosis complex J. Clin. Microbiol. 26 1988 2120 2123
10. H. Soini, E. Eerola, and M.K. Viljanen Genetic diversity among Mycobacterium avium complex AccuProbe-positive isolates J. Clin. Microbiol. 34 1996 55 57
11. D. Cousins, B. Francis, and D. Dawson Multiplex PCR provides a low-cost alternative to DNA probe methods for rapid identification of Mycobacterium avium and Mycobacterium intracellulare J. Clin. Microbiol. 34 1996 2331 2333
12. M.K. Viljanen, L. Olkkonen, and M.-L. Katila Conventional identification characteristics, mycolate and fatty acid composition and clinical significance of MAIX AccuProbe-positive isolates of Mycobacterium avium complex J. Clin. Microbiol. 31 1993 1376 1378
13. P. Kirschner, B. Springer, U. Vogel, A. Meier, A. Wrede, M. Kiekenbeck, F.-C. Bange, and E.C. Böttger Genotypic identification of mycobacteria by nucleic acid sequence determination: report of a 2-year experience in a clinical laboratory J. Clin. Microbiol. 31 1993 2882 2889
14. B. Springer, L. Stockman, K. Teschner, G.D. Roberts, and E.C. Böttger Two-laboratory collaborative study on identification of mycobacteria: molecular versus phenotypic methods J. Clin. Microbiol. 34 1996 296 303
15. N.M. El Amin, H.-S. Hanson, B. Pettersson, B. Petrini, and L.V. Von Stedingk Identification of non-tuberculous mycobacteria: 16S rRNA gene sequence analysis vs. conventional methods Scand. J. Infect. Dis. 32 2000 47 50
16. T. Rogall, T. Flohr, and E. Böttger Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium Int. J. Syst. Bacteriol. 40 1990 323 330
17. B. Ninet, M. Monod, S. Emler, J. Pawlowski, C. Metral, P. Rohner, R. Auckenthaler, and B. Hirschel Two different 16S rRNA genes in a mycobacterial strain J. Clin. Microbiol. 34 1996 2531 2536
18. D. Thierry, F. Vincent, F. Clement, and J.-L. Guesdon Isolation of specific DNA fragment of Mycobacterium avium and their possible use in diagnosis J. Clin. Microbiol. 31 1993 1048 1054
19. A. Devallois, M. Picardeau, K.S. Goh, C. Sola, V. Vincent, and N. Rastogi Comparative evaluation of PCR and commercial DNA probes for detection and identification of species level of Mycobacterium avium and Mycobacterium intracellulare J. Clin. Microbiol. 34 1996 2756 2759
20. D. Thierry, S. Baugé, J.-D. Poveda, V. Vincent, and J.-L. Guesdon Rapid identification of Mycobacterium avium-intracellurale complex strains: clinical practice evaluation of DT6 and DT1 probes J. Infect. Dis. 168 1993 1337 1338
21. C. Sola, A. Devallois, K. Goh Seng, E. Legrand, and N. Rastogi Molecular characterization of Mycobacterium avium complex isolates from Caribbean patients by DT1/DT6-PCR, nonradioactive Southern hybridization, and the Accuprobe system Curr. Microbiol. 33 1996 352 358
22. A. Devallois, M. Picardeau, C.N. Paramasivan, V. Vincent, and N. Rastogi Molecular characterization of Mycobacterium avium complex isolates giving discordant results in AccuProbe tests by PCR-restriction enzyme analysis, 16S rRNA gene sequencing and DT1/DT6 PCR J. Clin. Microbiol. 35 1997 2767 2772
23. G. Plum, and J.E. Clark-Curtiss Induction of Mycobacterium avium gene expression following phagocytosis by human macrophages Infect. Immun. 62 1994 476 483
24. G. Plum, M. Brenden, J.E. Clark-Curtiss, and G. Pulverer Cloning, sequencing and expression of the mig gene of Mycobacterium avium, which codes for a secreted macrophage-induced protein Infect. Immun. 65 1997 4548 4557
25. M. Meyer, W.R. Philipp, R. Von Grunberg, T. Knoop, P. Hartmann, and G. Plum The macrophage-induced gene mig as a marker for clinical pathogenicity and in vitro virulence of Mycobacterium avium complex strains Infect. Immun. 66 1998 4549 4552
26. M.L. Beggs, R. Stevanova, and K.D. Eisenach Species identification of Mycobacterium avium complex isolates by a variety of molecular techniques J. Clin. Microbiol. 38 2000 508 512
27. M.C. Menendez, E. Palenque, M.C. Navarro, M.C. Nunez, M.J. Rebollo, and M.J. Garcia Characterization of a Mycobacterium intracellulare variant strain by molecular techniques J. Clin. Microbiol. 39 2001 4241 4246
28. F. Dias, S. Ghebremichael, S.E. Hoffner, L. Martins, R. Norberg, and G. Källenius Drug susceptibility in Mycobacterium tuberculosis of a sample of patients in Guinea Bissau Tubercle Lung Dis. 74 1993 129 130
29. S.E. Hoffner, S.B. Svenson, R. Norberg, F. Dias, S. Ghebremichael, and G. Källenius Biochemical heterogeneity of Mycobacterium tuberculosis complex isolates in Guinea-Bissau J. Clin. Microbiol. 31 1993 2215 2217
30. G. Källenius, T. Koivula, S. Ghebremichael, S.E. Hoffner, R. Norberg, E. Svensson, F. Dias, B.-I. Marklund, and S.B. Svenson Evolution and clonal traits of Mycobacterium tuberculosis complex in Guinea-Bissau J. Clin. Microbiol. 37 1999 3872 3878
31. A. Nauclér, N. Winqvist, F. Dias, T. Koivula, L. De Lacerda, S.B. Svenson, G. Biberfeld, R. Norberg, and G. Källenius Pulmonary tuberculosis in Guinea Bissau. Clinical and bacteriological findings, HIV-status and shirt term survival of hospitalised patients Tubercle Lung Dis. 77 1996 226 232
32. R. Frothingham, and K.H. Wilson Sequence-based differentiation of strains in the Mycobacterium avium complex J. Bacteriol. 175 1993 2818 2825
33. R. Frothingham, and K.H. Wilson Molecular phylogeny of the Mycobacterim avium complex demonstrates clinically meaningful divisions J. Infect. Dis. 169 1994 305 312
34. C.Y. Turenne, L. Thibert, K. Williams, T.V. Burdz, V.J. Cook, J.N. Wolfe, D.W. Cockcroft, and A. Kabani Mycobacterium saskatchewanense sp. nov., a novel slowly growing scotochromogenic species from human clinical isolates related to Mycobacterium interjectum and Accuprobe-positive for Mycobacterium avium complex Int. J. Syst. Evol. Microbiol. 54 2004 659 667
35. L.G.R. Wayne, R.C.V. Good, E.C. Böttger, R. Butler, M. Dorsch, T. Ezaki, W. Gross, V. Jonas, J. Kilburn, P. Kirschner, M.I. Krichevsky, M. Ridell, T.M. Shinnick, B. Springer, E. Stackebrandt, I. Tarnok, Z. Tarnok, H. Tasaka, V. Vincent, N.G. Warren, C.A. Knott, and R. Johnson Semantide- and chemotaxonomy-based analysis of some problematic phenotypic clusters of slowly growing mycobacteria, a cooperative study of the International Working Group on Mycobacterial Taxonomy Int. J. Syst. Bacteriol. 46 1996 280 297