Comparative evaluation of PCR and commercial DNA probes for detection and identification to species level of Mycobacterium avium and Mycobacterium intracellulare

Journal of Clinical Microbiology

Volumn 34, Issue 11, 1996, Pages 2756-2759

  Devallois, Anne ^a   Picardeau, Mathieu ^b   Goh, Khye Seng ^a   Sola, Christophe ^a   Vincent, Véronique ^b   Rastogi, Nalin ^a  

^a Institut Pasteur de Guadeloupe   (Guadeloupe)

^b INSTITUT PASTEUR   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIUM DETECTION; BACTERIUM ISOLATION; DNA PROBE; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; MYCOBACTERIUM AVIUM; MYCOBACTERIUM INTRACELLULARE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; TUBERCULOSIS;

BACTERIA (MICROORGANISMS); HUMAN IMMUNODEFICIENCY VIRUS; MYCOBACTERIUM; MYCOBACTERIUM AVIUM; MYCOBACTERIUM INTRACELLULARE; STAPHYLOCOCCUS PHAGE 187;

EID: 0029858283     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/jcm.34.11.2756-2759.1996     Document Type: Article

References (35)

1. Baess, I. 1983. Deoxyribonucleic acid relationships between different serovars of Mycobacterium avium, M. intracellulare, and M. scrofulaceum. Acta Pathol. Microbiol. Scand. 91:201-203.
2. Böddinghaus, B., T. Rogall, T. Flohr, H. Blöcker, and E. C. Böttger. 1990. Detection and identification of mycobacteria by amplification of rRNA. J. Clin. Microbiol. 28:1751-1759.
3. Butler, W. R., and J. O. Kilburn. 1988. Identification of major slowly pathogenic mycobacteria and Mycobacterium gordonae by high-performance liquid chromatography of their mycolic acids. J. Clin. Microbiol. 26:50-53.
4. Crawford, J. T. 1994. Development of rapid techniques for identification of M. avium infections. 11th Forum in Microbiology. Res. Microbiol. 145:177-181.
5. David, H., V. Levy-Frébault, and M.-F. Thorel. 1989. Méthodes de laboratoire pour mycobactériologie clinique. Institut Pasteur, Paris.
6. Denner, J. C., A. Y. Tsang, D. Chatterjee, and P. Brennan. 1992. Comprehensive approach to identification of serovars of Mycobacterium avium complex. J. Clin. Microbiol. 30:473-478.
7. Falkinham, J. O., III. 1990. Arylsulfatase activity of Mycobacterium avium, M. intracellulare, and M. scrofulaceum. Int. J. Syst. Bacteriol. 40:66-70.
8. Falkinham, J. O., III. 1994. Epidemiology of Mycobacterium avium infections in the pre- and post-HIV era. Res. Microbiol. 145:169-172.
9. Frothingham, R., and K. H. Wilson. 1994. Molecular phylogeny of the Mycobacterium avium complex demonstrates clinically meaningful divisions. J. Infect. Dis. 169:305-312.
10. Gen-Probe Inc. 1992. AccuProbe, Mycobacterium avium, Mycobacterium intracellulare culture identification test. Manual for in vitro diagnostic use. Gen-Probe Inc., San Diego, Calif.
11. Guerrero, C., C. Bernasconi, D. Burki, T. Bodmer, and A. Telenti. 1995. A novel insertion sequence element from Mycobacterium avium IS1245 is a specific target for analysis of strain relatedness. J. Clin. Microbiol. 33:304-307.
12. Hance, A. J., B. Grandchamp, V. Levy-Frébault, D. Lecossier, J. Rauzier, D. Bocart, and B. Gicquel. 1989. Detection and identification of mycobacteria by amplification of mycobacterial DNA. Mol. Microbiol. 3:843-849.
13. Inderlied, C. B., C. A. Kemper, and L. E. M. Bermudez. 1993. The Mycobacterium avium complex. Clin. Microbiol. Rev. 6:266-310.
14. Jonas, V., C. Knott, D. P. Henderson, S. J. Snead, and N. G. Warren. 1992. Detection of Mycobacterium avium complex strains using acridinium esterlabeled probes, U-7, p. 166. In Abstracts of the 92nd General Meeting of the American Society for Microbiology 1992. American Society for Microbiology, Washington, D.C.
15. Kirschner, P., A. Meier, and E. C. Böttger. 1993. Genotypic identification and detection of mycobacteria, p. 173-190. In D. H. Persing, T. F. Smith, F. C. Tenover, and T. J. White (ed.), Diagnostic molecular microbiology. American Society for Microbiology, Washington, D.C.
16. Lamballerie, X. D., C. Zandotti, C. Vignoli, C. Bollet, and P. de Micco. 1992. A one-step microbial DNA extraction method using "Chelex 100" suitable for gene amplification. Res. Microbiol. 143:785-790.
17. Lebrun, L., F. Espinasse, J. Poveda, and V. Vincent-Levy-Frebault. 1992. Evaluation of nonradioactive DNA probes for identification of mycobacteria. J. Clin. Microbiol. 30:2476-2478.
18. Mayer, B. K., and J. O. Falkinham III. 1986. Catalase activity and heat inactivation for differentiation of M. avium, M. intracellulare, and M. scrofulaceum. Int. J. Syst. Bacteriol. 36:207-212.
19. McFadden, J. J., Z. M. Kunze, F. Portaels, V. Labrousse, and N. Rastogi. 1992. Epidemiological and genetic markers, virulence factors and intracellular growth of Mycobacterium avium in AIDS. Res. Microbiol. 143:423-430.
20. Rastogi, N., W. W. Barrow, J. O. Falkinham III, C. O. Thoen, J. T. Crawford, B. T. Mangura, L. B. Reichman, L. B. Heifets, B. Dautzenberg, L. S. Young, L. E. M. Bermudez, C. D. Inderlied, A. E. Suzuki, J. M. Inamine, P. R. J. Gangadharam, M. V. Reddy, M. Denis, H. Shiratsuchi, J. L. Johnson, J. J. Ellner, J. T. Belisle, and P. J. Brennan. 1994. 11th Forum in Microbiology, "Laboratory and clinical aspects of the Mycobacterium avium epidemic: contributing factors associated with variability of drug susceptibility and immune responsiveness, and the multifaceted nature of pathogenicity." Res. Microbiol. 145:167-261.
21. Rastogi, N., J. J. McFadden, M. L. Gougeon, L. Montagnier, F. M. Collins, C. R. Horsburgh, R. J. Coker, T. J. Hellyer, I. N. Brown, J. N. Weber, I. M. Orme, D. Chatterjee, J. D. A. Van Embden, D. Van Soolingen, P. M. Small, P. W. M. Hermans, S. E. Hoffner, G. Källenius, S. B. Svenson, R. S. Wallis, J. J. Ellner, H. Shiratsuchi, G. A. W. Rook, A. Vyakarnam, D. M. Yajko, L. S. Young, L. E. M. Bermudez, C. B. Inderlied, Z. M. Kunze, F. Portaels, and V. Labrousse. 1992. 8th Forum in Microbiology, "Mycobacteria and AIDS: epidemiological and genetic markers, virulence factors and interactions with the immune system." Res. Microbiol. 143:357-440.
22. Saito, H., H. Tomioka, K. Sato, H. Tasaka, and D. J. Dawson. 1990. Identification of various serovar strains of Mycobacterium avium complex by using DNA probes specific for Mycobacterium avium and Mycobacterium intracellulare. J. Clin. Microbiol. 28:1694-1697.
23. Sato, K., H. Tomioka, and H. Saito. 1992. Differential susceptibilities of Mycobacterium avium and Mycobacterium intracellulare to sodium nitrite. J. Clin. Microbiol. 30:2994-2995.
24. Soini, H., E. Eerola, and M. K. Viljanen. 1996. Genetic diversity among Mycobacterium avium complex AccuProbe-positive isolates. J. Clin. Microbiol. 34:55-57.
25. Sritharan, V., J. V. Iralu, and R. H. Barker, Jr. 1995. Specificity of diagnostic PCR amplification for M. avium using the probe pMAV22. Mol. Cell. Probes 9:71-74.
26. Telenti, A., F. Marchesi, M. Balz, F. Bally, E. C. Böttger, and T. Bodmer. 1993. Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis. J. Clin. Microbiol. 31:175-178.
27. Thierry, D., S. Baugé, J.-D. Poveda, V. Vincent, and J.-L. Guesdon. 1993. Rapid identification of Mycobacterium avium-intracellulare complex strains: clinical practice evaluation of DT6 and DT1 probes. J. Infect. Dis. 168:1337-1338.
28. Thierry, D., P. Matsiota-Bernard, C. Nauciel, and J.-L. Guesdon. 1994. Comparison of polymerase chain reaction and non-radioactive hybridization techniques for the identification of Mycobacterium avium strains. Mol. Cell. Probes 8:469-471.
29. Thierry, D., V. Vincent, F. Clément, and J.-L. Guesdon. 1993. Isolation of specific DNA fragments of Mycobacterium avium and their possible use in diagnosis. J. Clin. Microbiol. 31:1048-1054.
30. Tomioka, H., H. Saito, K. Sato, and D. J. Dawson. 1990. Arylsulfatase activity for differentiating Mycobacterium avium and Mycobacterium intracellulare. J. Clin. Microbiol. 28:2104-2106.
31. Tomioka, H., H. Saito, K. Sato, H. Tasaka, and D. J. Dawson. 1993. Identification of Mycobacterium avium complex strains belonging to serovars 21-28 by three commercial DNA probe tests. Tubercle Lung Dis. 74:91-95.
32. Tsang, A. Y., I. Drupa, M. Goldberg, J. K. McClatchy, and P. J. Brennan. 1983. Use of serology and thin-layer chromatography for the assembly of an authenticated collection of serovars within the Mycobacterium avium-Mycobacterium intracellulare-Mycobacterium scrofulaceum complex. Int. J. Syst. Bacteriol. 33:285-292.
33. Varnerot, A., F. Clément, and V. Vincent Lévy-Frébault. 1992. Evaluation of nonradioactive DNA probes for the identification of Mycobacterium avium complex. Methods Mol. Cell. Biol. 3:198-203.
34. Viljanen, M. K., L. Olkkonen, and M.-L. Katila. 1993. Conventional identification characteristics, mycolate and fatty acid composition, and clinical significance of MAIX AccuProbe-positive isolates of Mycobacterium avium complex. J. Clin. Microbiol. 31:1376-1378.
35. Wayne, L. G., R. C. Good, A. Tsang, R. Butler, D. Dawson, D. Groothuis, W. Gross, J. Hawkins, J. Kilburn, M. Kubin, K. H. Schröder, V. A. Silcox, C. Smith, M.-F. Thorel, C. Woodley, and M. A. Yakrus. 1993. Serovar determination and molecular taxonomic correlation in Mycobacterium avium, Mycobacterium intracellulare, and Mycobacterium scrofulaceum: a cooperative study of the International Working Group on Mycobacterial Taxonomy. Int. J. Syst. Bacteriol. 43:482-489.