Validation of multiplex polymorphic STR amplification sets developed for personal identification applications

Journal of Forensic Sciences

Volumn 41, Issue 4, 1996, Pages 582-590

  Micka, Katherine A ^a   Sprecher, Cynthia J ^a   Lins, Ann M ^a   Comey, Catherine Theisen ^b   Koons, Barbara W ^b   Crouse, Cecelia ^c   Endean, Debra ^d   Pirelli, Kevin ^d   Lee, Steven B ^e   Duda, Nicola ^e   Ma, Maosheng ^e   Schumm, James W ^a  

^a PROMEGA CORPORATION   (United States)

^b Federal Bureau of Investigation   (United States)

^c Palm Beach County Sheriff's Office   (United States)

^d BLOOD RESEARCH INSTITUTE   (United States)

^e DNA Laboratory   (United States)

Author keywords

amplification; forensic science; microsatellite; multiplex; paternity; polymerase chain reaction (PCR); polymorphis m; short tandem repeat (STR); validation

Indexed keywords

DNA;

ALLELE; ARTICLE; BASE PAIRING; DNA DETERMINATION; DNA TEMPLATE; FLUORESCENCE; FORENSIC SCIENCE; GEL ELECTROPHORESIS; GENE AMPLIFICATION; GENE LOCUS; GENETIC POLYMORPHISM; HUMAN; PATERNITY TEST; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SILVER STAINING; TANDEM REPEAT;

EID: 8944263310     PISSN: 00221198     EISSN: None     Source Type: Journal    
DOI: 10.1520/jfs13959j     Document Type: Article

References (35)

1. Edwards A, Civitello A, Hammond HA, Caskey CT. DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am J Hum Genet 1991;49:746-56.
2. Edwards A, Hammond HA, Chakraborty R, Caskey CT. DNA typing with trimeric and tetrameric tandem repeats: Polymorphic loci, detection systems, and population genetics. Proceedings from the Second International Symposium on Human Identification 1991; Madison (WI) 1991;31-52.
3. Murray JC, Buetow KH, Weber JL, Ludwignsen S, Scherpbier-Heddema T, Manion F, et al. A comprehensive human linkage map with centimorgan density. Science 1994;265:2049-54.
4. Frégeau CJ, Fourney RM. DNA typing with fluorescently tagged short tandem repeats: A sensitive and accurate approach to human identification. BioTechniques 1993;15:100-19.
5. Kimpton CP, Gill P, Walton A, Urquhart A, Millican ES, Adams M. Automated DNA profiling employing multiplex amplification of short tandem repeat loci. PCR Methods and Applications 1993;3:13-22.
6. Puers C, Hammond HA, Jin L, Caskey TC, Schumm JW. Identification of repeat sequence heterogeneity at the polymorphic short tandem repeat locus HUMTH01 [AATG]n and reassignment of alleles in population analysis by using a locus-specific allelic ladder. Am J Hum Genet 1993;53:953-58.
7. Puers C, Lins AM, Sprecher CJ, Brinkmann B, Schumm JW. Analysis of polymorphic STR loci using well-characterized allelic ladders. Proceedings from the fourth international symposium on human identification 1993; Sept 27-29; Scottsdale (AZ): 1993;161-72.
8. Puers C, Hammond HA, Caskey CT, Lins AM, Sprecher CJ, Brinkmann B, Schumm JW. Allelic ladder characterization of the short tandem repeat polymorphism located in the 5′ flanking region to the human coagulation Factor XIII A subunit gene. Genomics 1994;23:260-64.
9. Levinson G, Gutman GA. Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 1987;4:203-21.
10. Schlotterer C, Tautz D. Slippage synthesis of simple sequence DNA. Nucleic Acids Res 1992;20:211-15.
11. Weber JL, May PE. Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet 1989;44:388-96.
12. Beckman JS, Weber JL. Survey of human and rat microsatellites. Genomics 1992;12:627-31.
13. Hammond HA, Jin L, Zhong Y, Caskey CT, Chakraborty R. Evaluation of 13 short tandem repeat loci for use in personal identification applications. Am J Hum Genet 1994;55:175-89.
14. Schumm JW, Lins A, Puers C, Sprecher C. Development of nonisotopic multiplex amplification sets for analysis of polymorphic STR loci. Proceedings from the fourth international symposium on human identification 1993; Sept 27-29; Scottsdale (AZ): 1993;177-87.
15. Urquhart A, Oldroyd NJ, Kimpton CP, Gill P. Highly discriminating heptaplex short tandem repeat PCR system for forensic identification. Biotechniques 1991;18:116-21.
16. Sprecher CJ, Puers C, Lins AM, Schumm JW. A general approach to analysis of polymorphic short tandem repeat loci. Biotechniques (in press).
17. Bassam BJ, Caetano-Anolles G, Gresshoff PM. Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem 1991;196:80-83.
18. Huang NE, Schumm J, Budowle B. Chinese population data on three tetrameric short tandem repeat loci - HUMTH01, TPOX, and CSF1PO - derived using multiplex PCR and manual typing. Forensic Sci Int 1995;71:131-36.
19. Lins AM, Sprecher CJ, Puers C, Schumm JW. Multiplex sets for the amplification of polymorphic short tandem repeat loci - silver stain and fluorescent detection. Biotechniques 1996;20:882-9.
20. Technical Working Group on DNA Analysis Methods and California Association of Criminalists Ad Hoc Committee on DNA Quality Assurance. Guidelines for a quality assurance program for DNA analysis. Crime Laboratory Digest 1995;22:21-50.
21. American Association of Blood Banks. ISBN NO. 1-56395-037-5. 8101 Glenbrook Road, Bethesda, Maryland 20814-2749.
22. Comey C, et al. DNA extraction strategies for amplified fragment length polymorphism analysis. J Forensic Sci 1994;39:1254.
23. Grimberg J, Nawoschi S, Belluscio L, McKee R, Turck A, Eisenberg A. A simple and efficient non-organic procedure for the isolation of genomic DNA from blood. Nucleic Acids Res 1989;17:20.
24. Miller SA, Dykes DD, Polesky HF. A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 1988;16:1215.
25. ® 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. BioTechniques 1991;10:506-13.
26. Waye JS, Presley LA, Budowle B, Shutler GG, Fourney RM. A simple and sensitive method for quantifying human genomic DNA in forensic specimen extracts. BioTechniques 1989;7:852-55.
27. Edwards A, Hammond HA, Jin L, Caskey CT, Chakraborty R. Genetic variation at five trimeric and tetrameric tandem repeat loci in four human population groups. Genomics 1992;12:241-53.
28. Kimpton CP, Walton A, Gill P. A further tetranucleotide repeat polymorphism in the vWF gene. Hum Mol Genet 1992;1:287.
29. Kobayashi Y. A method to cast thin sequencing gels. BRL Focus 1988;10:73-74.
30. Frank R, Koster H. DNA chain length markers and the influence of base composition on electrophoretic mobility of oligodeoxyribonucleotides in polyacrylamide gels. Nucleic Acids Res 1979;6:2069-87.
31. Saiki RK, Walsh PS, Levenson CH, Erlich HA. Genetic analysis of amplified DNA with immobilized sequence-specific oligonucleotide probes. Proc Natl Acad Sci, U.S.A. 1989;86:6230-34.
32. Kawasaki E, Saiki R, Erlich H. Genetic analysis using polymerase chain reaction-amplified DNA and immobilized oligonucleotide probes: reverse dot-blot typing. Methods Enzymol 1993;218:369-81.
33. Kasai K, Nakamura Y, White R. Amplification of a variable number of tandem repeats VNTR locus, pMCT118, by the polymerase chain reaction PCR and its application to forensic science. J Forensic Sci 1990;35:1196-2000.
34. Budowle B, Chakraborty R, Giusti AM, Eisenberg AJ, Allen RC. Analysis of the VNTR locus D1S80 by the PCR followed by high-resolution PAGE. Am J Hum Genet 1991;48:137-44.
35. Budowle B, Monson KL, Chakrabony R. Estimating minimum allele frequencies for DNA profile frequency estimates for PCR-based loci abstract. Int J Leg Med 1996;108(4):173-6.