Multiplex sets for the amplification of polymorphic short tandem repeat loci - Silver stain and fluorescence detection

BioTechniques

Volumn 20, Issue 5, 1996, Pages 882-889

  Lins, Ann M ^a   Sprecher, Cynthia J ^a   Puers, Christoph ^a,b   Schumm, James W ^a  

^a PROMEGA CORPORATION   (United States)

^b Institute for Forensic Medicine   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

REPETITIVE DNA;

ARTICLE; CONTROLLED STUDY; DNA ISOLATION; FLUORESCENCE; GENE AMPLIFICATION; GENE LOCUS; GENETIC POLYMORPHISM; HUMAN; SILVER STAINING; TANDEM REPEAT;

EID: 0029944216     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/96205rr01     Document Type: Article

References (39)

1. Adamson, D., H. Albertsen, L. Ballard, P. Bradley, M. Carlson, P. Cartwright, et al. 1995. A collection of ordered tetranucleotiderepeat markers from the human genome. Am. J. Hum. Genet. 57:619-628.
2. Bassam, B.J., G. Caetano-Anolles and P.M. Gresshoff. 1991. Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal. Biochem. 196:80-83.
3. Beckman, J.S. and J.L. Weber. 1992. Survey of human and rat microsatellites. Genomics 12:627-631.
4. Brenner, C. and J.W. Morris. 1990. Paternity index calculations in single locus hypervariable DNA probes: validation and other studies, p. 21-53. In Proceedings for the International Symposium on Human Identification 1989. Promega Corporation, Madison, WI.
5. Brook, J.D., M.E. McCurrach, H.G. Harley, A.J. Buckler, D. Church, H. Aburatani, et al. 1992. Molecular basis of myotonic dystrophy: expansion of a trinucleotide (CTG) repeat at the 3′ end of a transcript encoding a protein kinase family member. Cell 68:799-808.
6. Budowle, B., A.M. Giusti, J.S. Waye, F.S. Baechtel, R.M. Fourney, D.E. Adams, L.A. Presley, H.A. Deadman and K.L. Monson. 1991. Fixed-bin analysis for statistical evaluation of continuous distributions of allelic data from VNTR loci, for use in forensic comparisons. Am. J. Hum. Genet. 48:841-855.
7. Clark, J.M. 1988. Novel non-templated nucleotide addition reactions catalyzed by procaryotic and eucaryotic DNA polymerases. Nucleic Acids Res. 16:9677-9686.
8. Donis-Keller, H., P. Green, C. Helms, S. Cartinhour, B. Weiffenbach, K. Stephens, et al. 1987. A genetic linkage map of the human genome. Cell 51:319-337.
9. Edwards, A., A. Civitello, H.A. Hammond and C.T. Caskey. 1991. DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am. J. Hum. Genet. 49:746-756.
10. Edwards, A., H.A. Hammond, L. Jin, C.T. Caskey and R. Chakraborty. 1992. Genetic variation at five trimeric and tetrameric tandem repeat loci in four human population groups. Genomics 12:241-253.
11. Endean, D.J. 1990. RFLP analysis for paternity testing: observations and caveats, p. 55-76. In Proceedings for the International Symposium on Human Identification 1989. Promega Corporation, Madison, WI.
12. Frank, R. and H. Koster. 1979. DNA chain length markers and the influence of base composition on electrophoretic mobility of oligodeoxyribonucleotides in polyacrylamide gels. Nucleic Acids Res. 6:2069-2087.
13. Fregeau, C.J. and R.M. Fourney. 1993. DNA typing with fluorescently tagged short tandem repeats: a sensitive and accurateapproach to human identification. BioTechniques 15:100-119.
14. Hammond, H.A., L. Jin, Y. Zhong, C.T. Caskey and R. Chakraborty. 1994. Evaluation of 13 short tandem repeat loci for use in personal identification applications. Am. J. Hum. Genet. 55:175-189.
15. Jeffreys, A.J., V. Wilson and S.L. Thein. 1985. Hypervariable 'minisatellite' regions in human DNA. Nature 314:67-73.
16. Jones, D.A. 1972. Blood samples: probability of discriminations. J. Forensic Sci. Soc. 12:355-359.
17. Kimpton, C.P., P. Gill, A. Walton, A. Urquhart, E.S. Millican and M. Adams. 1993. Automated DNA profiling employing multiplex amplification of short tandem repeat loci. PCR Methods Appl. 3:13-22.
18. Knight, S.J.L., M.A. Voelckel, M.C. Hirst, A.V. Flannery, A. Moncla and K.E. Davies. 1994. Triplet repeat expansion at the FRAXE locus and X-linked mild mental handicap. Am. J. Hum. Genet. 55:81-86.
19. Kremer, E.J., M. Pritchard, M. Lynch, S. Yu, K. Homan, E. Baker, S.T. Warren, D. Schlessigner, B.R. Sutherland and R.I. Richards. 1991. Mapping of DNA ionstability at the fragile X to a trinucleotide repeat sequence p(CGG)n. Science 252:1711-1714.
20. Levinson, G. and G.A. Gutman. 1987. Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol. Biol. Evol. 4:203-221.
21. Litt, M. and J.A. Luty. 1989. A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am. J. Hum. Genet. 44:397-401.
22. MacDonald, M.E., C.M. Ambrose, M.P. Duyao, R.H. Myers, C. Lin, L. Srinidhi, et al. 1993. A novel gene containing a trinucleotide repeat that is expanded and unstable on Huntington's disease chromosomes. Cell 72:971-983.
23. Murray, J.C., K.H. Buetow, J.L. Weber, S. Ludwigsen, T. Scherpbier-Heddema, F. Manion, et al. 1994. A comprehensive human linkage map with centimorgan density. Science 265:2049-2054.
24. Nagafuchi, S., H. Yanagisawa, K. Sato, T. Shirayama, E. Ohsaki, M. Bundo, et al. 1994. Dentatorubral and pallidoluysian atrophy expansion of an unstable CAG trinucleotide on chromosome 12p. Nat. Genet. 6:14-18.
25. Nakamura, Y., M. Leppert, P. O'Connell, R. Wolff, T. Holm, M. Culver, C. Martin, E. Fujimoto, M. Hoff, E. Kumlin and R. White. 1987. Variable number of tandem repeat (VNTR) markers for human gene mapping. Science 235:1616-1622.
26. Orr, H.T., M. Chung, S. Banfi, T.J. Kwiatkowski Jr., A. Servadio, A.L. Beaudet, A.E. McCall, L.A. Duvick, L.P.W. Ranum and H.Y. Zoghbi. 1993. Expansion of an unstable trinucleotide CAG repeat in spinocerebellar ataxia type 1. Nat. Genet. 4:221-226.
27. Polymeropoulos, M.H., D.S. Rath, H. Xiao and C.R. Merril. 1991. Tetranucleotide repeat polymorphism at the human c-fes/fps proto-oncogene (FES). Nucleic Acids Res. 19:4018.
28. Polymeropoulos, M.H., D.S. Rath, H. Xiao and C.R. Merril. 1991. Tetranucleotide repeat polymorphism at the human coagulation factor XIIIA subunit gene (F13A1). Nucleic Acids Res. 19:4306.
29. Polymeropoulos, M.H., H. Xiao, D.S. Rath and C.R. Merril. 1991. Tetranucleotide repeat polymorphism at the human tyrosine hydroxylase gene (TH). Nucleic Acids Res. 19:3753.
30. 30.Promega Corporation. 1994. STR Systems Technical Manual, Part #TMD004. Madison, WI.
31. Puers, C., A.M. Lins, C.J. Sprecher, B. Brinkmann and J.W. Schumm. 1994. Analysis of polymorphic short tandem repeat loci using well-characterized allelic ladders, p. 161-172. In Proceedings from the Fourth International Symposium on Human Identification 1993. Promega Corporation, Madison, WI.
32. Puers, C., H.A. Hammond, C.T. Caskey, A.M. Lins, C.J. Sprecher, B. Brinkmann and J.W. Schumm. 1994. Allelic ladder characterization of the short tandem repeat polymorphism located in the 5′ flanking region to the human coagulation factor XIII A subunit gene. Genomics 23:260-264.
33. n and reassignment of alleles in population analysis by using a locusspecific allelic ladder. Am. J. Hum. Genet. 53:953-958.
34. Schlotterer, C. and D. Tautz. 1992. Slippage synthesis of simple sequence DNA. Nucleic Acids Res. 20:211-215.
35. Sprecher, C.J., C. Puers, A.M. Lins and J.W. Schumm. 1996. A general approach to analysis of polymorphic short tandem repeat loci. BioTechniques 20:266-276.
36. Tautz, D., M. Trick and GA. Dover. 1986. Cryptic simplicity in DNA is a major source of genetic variation. Nature 322:652-656.
37. Urquhart, A., C.P. Kimpton, T.J. Downes and P. Gill. 1994. Variation in short tandem repeat sequences - a survey of twelve microsatellite loci for use as forensic identification markers. Int. J. Leg. Med. 107:13-20.
38. Weber, J.L. and P.E. May. 1989. Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am. J. Hum. Genet. 44:388-396.
39. Yamamoto, Y., H. Kawai, K. Nakahara, M. Osame, Y. Nakatsuji, T. Kishimoto and S. Saloda. 1992. A novel primer extension method to detect the number of CAG repeats in the androgen receptor gene in families with X-linked spinal and bulbar muscular atrophy. Biochem. Biophys. Res. Commun. 182:507-513.