Proteomics: State of the art and its application in cardiovascular research

Current Medicinal Chemistry

Volumn 11, Issue 24, 2004, Pages 3203-3218

  Scobioala, Sergiu ^a,b   Klocke, Rainer ^a   Michel, Günter ^a   Kuhlmann, Michael ^a   Nikol, Sigrid ^a,c  

^a UNIVERSITY OF MÜNSTER   (Germany)

^b Interdisciplinary Ctr Clin Res   (Germany)

^c UNIVERSITY HOSPITAL MÜNSTER   (Germany)

Author keywords

Cardiovascular disease; Mass spectrometry; Polyacrylamide gel electrophoresis; Post translational modification; Protein identification; Protein protein interaction; Proteomic analysis

Indexed keywords

AMPHOLYTE; ANAZOLENE SODIUM; BIOLOGICAL MARKER; CONCANAVALIN A; CREATINE KINASE; DESMIN; DIHYDROLIPOAMIDE DEHYDROGENASE; DODECYL SULFATE SODIUM; FLUORESCENT DYE; HEAT SHOCK PROTEIN 27; HEAT SHOCK PROTEIN 60; HEAT SHOCK PROTEIN 70; HEAT SHOCK PROTEIN 72; HEPARIN; MITOCHONDRIAL PROTEIN; MYOSIN LIGHT CHAIN; NAFAMSTAT MESILATE; PROTEIN KINASE C; PROTEINASE INHIBITOR; PROTEOME; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE; PYRUVATE DEHYDROGENASE; SERINE PROTEINASE INHIBITOR; SUPEROXIDE DISMUTASE; TRIOSEPHOSPHATE ISOMERASE;

AFFINITY CHROMATOGRAPHY; BIOINFORMATICS; CAPILLARY ZONE ELECTROPHORESIS; CARDIOVASCULAR DISEASE; DISEASE MARKER; DRUG TARGETING; GENE EXPRESSION; GENE THERAPY; GENETIC ANALYSIS; GENETIC CODE; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; HUMAN; IMAGE ANALYSIS; LASER CAPTURE MICRODISSECTION; MASS SPECTROMETRY; MEDICAL RESEARCH; NONHUMAN; PEPTIDE ANALYSIS; PHAGE DISPLAY; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN ANALYSIS; PROTEIN DEFECT; PROTEIN FUNCTION; PROTEIN MICROARRAY; PROTEIN PROCESSING; PROTEIN PROTEIN INTERACTION; PROTEIN PURIFICATION; PROTEOMICS; REVIEW; SIGNAL TRANSDUCTION; SILVER STAINING; SPECIES DIFFERENCE; TISSUE SPECIFICITY; TWO HYBRID SYSTEM;

EID: 8844232687     PISSN: 09298673     EISSN: None     Source Type: Journal    
DOI: 10.2174/0929867043363767     Document Type: Review

References (103)

1. Aebersold, R.; Mann, M. Nature, 2003, 13, 198.
2. Arnott, D.; O'Connell, K.L.; King, K.L.; Stults, J.T. Anal. Biochem., 1998, 10, 1.
3. Arrell, D.K.; BPY, A.; Fraser, H.; Sasaki, N.; Van Eyk, J.E. Circulation, 2000, 102, 202.
4. Arrell, D.K.; Neverova, I.; Fraser, H.; Marban, E.; Van Eyk, J.E. Circ. Res., 2001, 14, 480.
5. Arrell, D.K.; Neverova, I.; Van Eyk, J.E. Circ. Res., 2001, 88, 763.
6. Auerbach, D.; Schenk, B.; Hübner, B.; Meier, M.; Hottiger, M.O.; Hübscher, U.; Stagljar, I. BIOforum International, 2001 4, 171.
7. Auerbach D.; Galeuchet-Schenk, B.; Hottiger, M.O.; Stagljar, I. J. Recept. Signal Transduct. Res., 2002, 471.
8. Banks, R.E.; Dunn, M.J.; Hochstrasser, D.E.; Sanchez, J.C.; Blackstock, W.; Pappin, D.J.; Selby, P.J. Lancet, 2000, 18 1749.
9. Baker, C.S.; Corbett, J.M.; May, A.J.; Yacoub, M.H.; Dunn, M.J. Electrophoresis, 1992 13, 723.
10. Bier, M. Electrophoresis, 1998 19, 1057.
11. Boguski, M.S.; McIntosh, M.W. Nature, 2003 13 233.
12. Catimel, B.; Rothacker, J.; Nice, E. J. Biochem. Biophys. Methods, 2001, 49, 289.
13. Celis, J. Cell Biology: a laboratory handbook, 1998 2nd edition, Academic Press, San Diego
14. Chong, B.E.; Kim, J.; Lubman, D.M.; Tiedje, J.M.; Kathariou, S. J. Chromatogr .B Biomed Sci. Appl., 2000, 1,167.
15. Corbett, J.M.; Wheeler, C.H.; Dunn, M.J. Electrophoresis, 1995, 16, 1524.
16. Corbett, J.M.; Why, H.J.; Wheeler, C.H.; Richardson, P.J.; Archard, L.C.; Yacoub, M.H.; Dunn, M.J. Electrophoresis, 1998, 19, 2031.
17. Corthals, G.L.; Molloy, M.P.; Herbert, B.R.; Williams K.L.; Cooley, A.A. Electrophoresis, 1997, 18, 317.
18. Damer, C.K.; Partridge, J.; Pearson, W.R.; Haystead, T.A. J. Biol. Chem., 1998, 18, 24396.
19. Dunn, M.J. DDT, 2000, 2, 76.
20. von Eggeling, F.; Davies, H.; Lomas, L.; Fiedler, W.; Junker, K.; Claussen, U.; Ernst, G. Biotechnologies, 2000, 29, 1066.
21. Evans, G.; Wheeler, C.H.; Corbett, J.M.; Dunn, M.J. Electrophoresis, 1997, 18, 471.
22. Field, M.; Clark, J. Cardiovasc. Res., 1997, 33, 8.
23. Fields, S.; Song, O.K. Nature, 1989, 20, 245.
24. Fung, E.T.; Wright, G.L.; Dalmasso, E.A. Curr. Opin. Molec. Ther., 2000, 2, 643.
25. Fung, E.T.; Thulasiraman, V.; Weinberger, S.R.; Dalmasso, E.A. Curr. Opin. Biotechnol., 2001, 12, 65.
26. Giometti, C.S.; Gemmell, M.A.; Tollaksen, S.L.; Taylor, J. Electrophoresis 1991, 12, 536.
27. Godovac-Zimmermann, J.; Soskic, V.; Poznanovic, S.; Brianza, F. Electrophoresis, 1999, 20, 952.
28. Görg, A.; Boguth, G.; Obermaier, C.; Posch, A.; Weiss, W. Electrophoresis, 1995, 16, 1079.
29. Görg, A.; Obermaier, C.; Boguth, G.; Csordas, A.; Diaz, J.J.; Madjar, J.J. Electrophoresis, 1997, 18, 328.
30. Görg, A.; Obermaier, C.; Boguth, G.; Harder, A.; Scheibe, B.; Wildgruber, R.; Weiss, W. Electrophoresis, 2000, 21 1037.
31. Görg, A.; Weiss, W. Proteome Research: Two-Dimensional Electrophoresis and Identification Methods, Springer-Verlag: Berlin, Heidelberg, New York, 2000.
32. Hames, B.D. A Practical Approach; Oxford University Press: New York, 1990; pp. 51-85.
33. Hanash, S. Nature, 2003, 13, 226.
34. Hansen, K.; Moller, J.V. Electrophoresis, 1993, 14, 112.
35. Heinke, M.Y.; Wheeler, C.H.; Chang, D.; Einstein, R.; Drake-Holland, A.; Dunn, M.J.; dos Remedios, C.G. Electrophoresis, 1998, 19, 2021.
36. Heinke, M.Y.; Wheeler, C.H.; Yan, J.X.; Amin, V.; Chang, D.; Einstein, R.; Dunn, M.J.; dos Remedios, C.G. Electrophoresis, 1999, 20, 2086.
37. Henzel, W.J.; Billeci, T.M.; Stults, J.T.; Wong, S.C.; Grimley, C.; Watanabe, C. Proc. Natl. Acad. Sci. U. S. A., 1993 1, 5011.
38. Herbert, B.R.; Sanchez, J.C. Proteome Research: New Frontiers in Functional Genomics, Springer-Vorlag : Heidelberg, Berlin, New York, 1997.
39. Herbert, B.R.; Molloy, M.P.; Gooley, A.A.; Walsh, B.J.; Bryson, W.G.; Williams, K.L. Electrophoresis, 1998, 19, 845.
40. Herbert, B.R. Electrophoresis, 1999, 20, 660.
41. Ianello, R.C.; Jeffrey, P.L. Exp. neurol., 1990, 108, 156.
42. Islam, R.; Ko, C.; Landers, T. Sci. Tools, 1998, 3, 14.
43. Jager, D.; Jungblut, P.R.; Muller-Werdan, U. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci., 2002, 771 131.
44. Jensen, P.K.; Pasa-Tolic, L.; Anderson, G.A.; Horner, J.A.; Lipton, M.S.; Bruce, J.E.; Smith, R.D. Anal. Chem., 1999, 71, 2076.
45. Jensen, P.K.; Pasa-Tolic, L.; Peden, K.K.; Martinovic, S.; Lipton, M.S.; Anderson, G.A.; Tolic, N.; Wong, K.K.; Smith, R.D. Electrophoresis, 2000, 21, 1372.
46. Jungblut, P.; Otto, A.; Zeindl-Eberhart, E.; Plessner, K.P.; Knecht, M.; Regitz-Zagrosek, V.; Fleck, E.; Wittmann-Liebold, B. Electrophoresis, 1994, 15, 685.
47. Karlsson, K.; Cairns, N.; Lubec, G.; Fountoulakis, M. Electrophoresis, 1999, 20, 2970.
48. Klose, J. Humangenetik, 1975, 26, 231.
49. Kuhn, L.; Kettman, J.; Lefkovits, I. Electrophoresis, 1989, 10, 708.
50. Latif, N.; Baker, C.S.; Dunn, M.J.; Rose, M.L.; Brady, P.; Yacoub, M.H. J. of Am. Coll. Cardiol., 1993, 22, 1378.
51. Latif, N.; Rose, M.L.; Yacoub, M.H.; Dunn, M.J. J. of Heart Lung Transplant., 1995, 14, 119.
52. Li, X.P.; Pleissner, K.P.; Scheler, C.; Regitz-Zagrosek, V.; Salnikow, J.; Jungblut, P.R. Electrophoresis, 1999, 20, 891.
53. Lollo, B.A.; Harvey, S.; Liao, J.; Stevens, A.C.; Wagenknecht, R.; Sayen, R.; Whaley, J.; Sajjadi, F.G. Electrophoresis, 1999, 20, 854.
54. Lopez, M. F. J. Chromatogr. B. Biomed. Sci. Appl., 1999b, 722, 191.
55. Luo, L.; Wirth, P.J. Electrophoresis, 1993, 14 127.
56. Macri, J.; McGee, B.; Thomas, J.N.; Du, P.; Stevenson, T.I..; Kilby, G.W.; Rapundalo, S.T. Electrophoresis, 2000, 21, 1685.
57. Macri, J.; Rapundalo, S.T. TCM, 2001, 2, 66.
58. Manabe, T. Electrophoresis, 2000, 21, 1116.
59. Mason, G.G.; Murray, R.Z.; Pappin, D.; Rivett, A.J. FEBS Lett., 1998, 430, 269.
60. McGregor, E.; Dunn, M.J. Hum. Mol. Genet., 2003, 12, 135.
61. Monribot, C.; Boucherie, H. Two-dimensional electrophoresis with carrier ampholytes, Springer-Verlag: Berlin, 2000.
62. Nelson, R.W.; Nedelkov, D.; Tubbs, K.A. Electrophoresis 2000, 21, 1155.
63. O'Farrel, P.H. J. Biol. Chem., 1975, 250, 4007.
64. Opiteck, G.J.; Ramirez, S.M.; Jorgenson, J.W.; Moseley, M.A. Anal. Biochem., 1998, 258, 349.
65. Pandey, A.; Mann, M. Nature, 2000, 405, 321.
66. Pankuweit, S.; Portig, I.; Lottspeich, F.; Maisch, B. J. of Mol. Cell. Cardiol., 1997, 29, 77.
67. Pasquali, C.; Fialka, I.; Huber L.A. Electrophoresis, 1997, 18, 2573.
68. Patel, V.B.; Sandhu, G.; Corbett, J.M.; Dunn, M.J.; Rodrigues, L.M.; Griffiths, J.R.; Wassif, W.; Sherwood, R.A.; Richardson, P.J.; Preedy, V.R. Electrophoresis, 2000, 21, 2454.
69. Phizicky, E.; Bastiaens, P.I.; Zhu, H.; Snyder, M.; Fields, S. Nature, 2003, 13, 208.
70. Ping, P.; Zhang, J.; Pierce, W.M.; Bolli, R. Circ. Res., 2001, 88, 59.
71. Pleissner, K.P.; Regitz-Zagrosek, V. Electrophoresis, 1995, 16, 841.
72. Pohlner, K.; Portig, I.; Pankuweit, S.; Lottspeich, F.; Maisch, B. Am. J. Cardiol., 1997, 80, 1040.
73. Portig, I.; Pankuweit, S.; Lottspeich, F.; Maisch, B. Electrophoresis, 1996, 17, 803.
74. Preedy, V.R.; Macallan, D.C.; Griffin, G.E.; Cook, E.B.; Palmer, T.N.; Peters, T.J. Alcohol., 1997, 14, 545.
75. Rabilloud, T. Electrophoresis, 1992, 13, 429.
76. Rabilloud, T. Electrophoresis, 1996, 17, 813.
77. Rabilloud, T. Electrophoresis, 1998, 19, 758.
78. Santoni, V.; Rabilloud, T. Electrophoresis, 1999, 20, 705.
79. Scheler, C.; Muller, E.C.; Stahl, J.; Muller-Werdan, U.; Salnikow, J.; Jungblut, P. Electrophoresis, 1997, 18, 2823.
80. Scheler, C.; Lamer, S.; Pan, Z.; Li, X.P.; Salnikow, J.; Jungblut, P. Electrophoresis, 1998, 19, 918.
81. Scheler, C.; Li, X.P.; Sainikow, J.; Dunn, M.J.; Jungblut, P.R. Electrophoresis, 1999, 20, 3623.
82. Schwertz. H.; Langin, T.; Platsch, H.; Richert, J.; Bomm, S.; Schmidt, M.; Hillen, H.; Blaschke, G.; Meyer, J.; Darius, H.; Buerke, M. Proteomics., 2002, 2, 988.
83. Seilhamer, J.; Anderson, L. Electrophoresis, 1999 18, 533.
84. Shen, Y.; Berger, S.J.; Anderson, G.A.; Smith, R.D. Anal. Chem., 2000, 72, 2154.
85. Simone, N.L.; Paweletz, C.P.; Charboneau, L.; Petricoin, E.F. 3rd.; Liotta, L.A. Molec. Diagn., 2000, 5, 301.
86. Simone, N.L.; Remaley, A.T.; Charboneau, L.; Petricoin, E.F. 3rd.; Glickman, J.W.; Emmert-Buck, M.R.; Fleisher, T.A.; Liotta, L.A. Am. J. Pathol., 2000, 156, 445.
87. Soskic, V.; Gorlach, M.; Poznanovic, S.; Boehmer, F-D.; Godovac-Zimmermann, J. Biochemistry, 1999, 38, 1757.
88. Thiede, B.; Otto, A.; Zimny-Arndt, U.; Muller, E.C.; Jungblut, P. Electrophoresis, 1996, 17, 588.
89. Toraason, M.; Moorman, W.; Mathias, P.I.; Fultz, C.; Witzmann, F. Electrophoresis, 1997, 18, 2978.
90. Van Eyk J.E.; Murphy, A.M. Coron. Artery Dis., 2001 12, 343.
91. Vollmer, M., Nägele, E., Hörth, P. J. Biomol. Tech., 2003, 14, 128.
92. Wagner, K.; Miliotis T.; Marko-Varga, G.; Bischoff, R.; Unger, K.K. Anal. Chem., 2002, 15, 809.
93. Walsh, M.J.; Limos, L.; Tourtellotte, W.W. J. of Neurochem., 1984, 43, 1277.
94. Wasinger, V.C.; Cordwell, S.J.; Cerpa-Poljak, A.; Yan, J.X.; Gooley, A.A.; Wilkins, M.R.; Duncan, M.W.; Harris, R.; Williams, K.L.; Humphery-Smith, I. Electrophoresis, 1995, 16, 1090.
95. Weekes, J.; Wheeler, C.H.; Yan Jun, X. Electrophoresis, 1999, 20; 898.
96. Weekes, J.; Watson, R.R.; Dunn, M.J. Alcohol Alcohol., 2003, 38, 103.
97. Weiss, W.; Postel, W.; Görg, A. Electrophoresis, 1992, 13, 770.
98. Weiss, W.; Vogelmeier, C.; Görg, A. Electrophoresis, 1993, 14, 805.
99. Westbrook, J.A.; Jun, X.Y.; Wait, R.; Dunn, M.J. Proteomics, 2001, 1, 370.
100. Wheeler, C.H.; Collins, A.; Dunn, M.J.; Crisp, S.J.; Yacoub, M.H.; Rose M.L. J. of Heart Lung Transplant., 1995, 14, 188.
101. Wilkins, M.R.; Sanchez, J.C.; Williams, K.L.; Hochstrasser, D.F. Electrophoresis, 1996, 17, 830.
102. Williams, C.; Addona, T.A. Trends Biotechnol., 2000 18, 45.
103. Wilson, D.S.; Nock, S. Angew. Chem. Int. Ed., 2003 5, 494.