Changes in the functional and structural properties of the Mn cluster induced by replacing the side group of the C-terminus of the D1 protein of photosystem II

Biochemistry

Volumn 43, Issue 46, 2004, Pages 14644-14652

  Mizusawa, Naoki ^a   Yamanari, Toshihiro ^b   Kimura, Yukihiro ^a   Ishii, Asako ^a   Nakazawa, Shigeaki ^a   Ono, Taka Aki ^a  

^a INST OF PHYS AND CHEMICAL RESEARCH   (Japan)

^b HIROSHIMA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; FOURIER TRANSFORM INFRARED SPECTROSCOPY; MUTAGENESIS; PARAMAGNETIC RESONANCE; PROTEINS; THERMOLUMINESCENCE; X RAY ANALYSIS;

EVOLUTION ACTIVITY; LIGANDS; OXYGEN-EVOLVING COMPLEXES (OEC); PHOTOSYSTEMS;

MANGANESE;

ALANINE; ASPARAGINE; ASPARTIC ACID; CARBOXYLIC ACID; GLYCINE; MANGANESE; OXYGEN DERIVATIVE; VALINE;

ANIMAL CELL; ARTICLE; CARBOXY TERMINAL SEQUENCE; ELECTRON SPIN RESONANCE; FOURIER TRANSFORMATION; MUTANT; NONHUMAN; PHOTOSYSTEM II; PRIORITY JOURNAL; PROTEIN ANALYSIS; THERMOLUMINESCENCE; WILD TYPE; X RAY ANALYSIS;

AMINO ACID SUBSTITUTION; CHEMILUMINESCENT MEASUREMENTS; ELECTRON SPIN RESONANCE SPECTROSCOPY; LIGANDS; MANGANESE; MUTAGENESIS, SITE-DIRECTED; OXIDATION-REDUCTION; OXYGEN; PEPTIDE FRAGMENTS; PHOTOSYSTEM II PROTEIN COMPLEX; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; STRUCTURE-ACTIVITY RELATIONSHIP; SYNECHOCYSTIS;

ANIMALIA;

EID: 8744247473     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0486076     Document Type: Article

References (38)

1. Joliot, P., Barbieri, G., and Chabaud, R. (1969) Un nouveau modele des centres photochimiques du systeme II, Photochem. Photobiol. 10, 309-329.
2. 2 evolution: 1. A linear four-step mechanism, Photochem. Photobiol. 11, 457-475.
3. Tamura, N., Noda, K., Wakamatsu, K., Kamachi, H., Inoue, H., and Wada K. (1997) Involvement of carboxyl groups of the PSII reaction center proteins in photoactivation of the apo-water-oxidizing complex, Plant Cell Physiol. 38, 578-585.
4. Tang, X.-S., Diner, B. A., Larsen, B. S., Gilchrist, M. L., Lorigan, G. A., and Britt, R. D. (1994) Identification of histidine at the catalytic site of the photosynthetic oxygen-complex, Proc. Natl. Acad. Sci. U.S.A. 91, 704-708.
5. 2+ in the photosynthetic oxygen-evolving center by means of Fourier transform infrared spectroscopy, Biochim. Biophys. Acta 1228, 189-200.
6. Noguchi, T., Inoue, Y., and Tang, X.-S. (1999) Structure of a histidine-ligand in the photosynthetic oxygen-evolving complex as studied by light-induced Fourier transform difference spectroscopy, Biochemistry 38, 10187-10195.
7. Debus, R. J. (2001) Amino acid residues that modulate the properties of tyrosine Y(Z) and the manganese cluster in the water oxidizing complex of photosystem II, Biochim. Biophys. Acta 1503, 164-186.
8. Diner, B. A. (2001) Amino acid residues involved in the coordination and assembly of the manganese cluster of photosystem II. Proton-coupled electron transport of the redox-active tyrosines and its relationship to water oxidation, Biochim. Biophys. Acta 1503, 147-163.
9. Nixon, P. J., and Diner, B. A. (1992) Aspartate 170 of the photosystem II reaction center polypeptide D1 is involved in the assembly of the oxygen-evolving manganese cluster, Biochemistry 31, 942-948.
10. Nixon, P. J., Trost, J. T., and Diner, B. A. (1992) Role of the carboxy terminus of polypeptide D1 in the assembly of a functional water-oxidizing manganese cluster in photosystem II of the cyanobacterium Synechocystis sp. PCC 6803: assembly requires a free carboxyl group at C-terminal position 344, Biochemistry 31, 10859-10871.
11. Chu, H.-A., Nguyen, A. P., and Debus, R. J. (1994) Site-directed photosystem II mutants with perturbed oxygen-evolving properties. 1. Instability or inefficient assembly of the manganese cluster in vivo, Biochemistry 33, 6137-6149.
12. Nixon, P. J., and Diner, B. A. (1994) Analysis of water-oxidation mutants constructed in the cyanobacterium Synechocystis sp. PCC 6803, Biochem. Soc. Trans. 22, 338-343.
13. Chu, H.-A., Nguyen, A. P., and Debus, R. J. (1995) Amino acid residues that influence the binding of manganese or calcium to photosystem II. 1. The lumenal interhelical domains of the D1 polypeptide, Biochemistry 34, 5839-5858.
14. Chu, H.-A., Nguyen, A. P., and Debus, R. J. (1995) Amino acid residues that influence the binding of manganese or calcium to photosystem II. 2. The carboxy-terminal domain of the D1 polypeptide, Biochemistry 34, 5859-5882.
15. Zouni, A., Witt, H.-T., Kern, J., Fromme, P., Krauss, N., Saenger, W., and Orth, P. (2001) Crystal structure of photosystem II from Synechococcus elongatus at 3.8 Å resolution, Nature 409, 739-743.
16. Fromme, P., Kern, J., Loll, B., Biesiadka, J., Saenger, W., Witt, H. T., Krauss, N., and Zouni, A. (2002) Functional implications on the mechanism of the function of photosystem II including water oxidation based on the structure of photosystem II, Philos. Trans. R. Soc. London, Ser. B 357, 1337-1345.
17. Kamiya, N., and Shen, J.-R. (2003) Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-Å resolution, Proc. Natl. Acad. Sci. U.S.A. 100, 98-103.
18. Ferreira, K. N., Iverson, T. M., Maghlaoui, K., Barber, J., and Iwata, S. (2004) Architecture of the photosynthetic oxygen-evolving center, Science 303, 1831-1837.
19. Marder, J. B., Goloubinoff, P., and Edelman, M. (1984) Molecular architecture of the rapidly metabolized 32-kilodalton protein of photosystem II. Indications for COOH-terminal processing of a chloroplast membrane polypeptide, J. Biol. Chem. 259, 3900-3908.
20. Shestakov, S. V., Anbudurai, P. R., Stanbekova, G. E., Gadzhiev, A., Lind, L. K., and Pakrasi, H. B. (1994) Molecular cloning and characterization of the ctpA gene encoding a carboxyl-terminal processing protease. Analysis of a spontaneous photosystem II-deficient mutant strain of the cyanobacterium Synechocystis sp. PCC 6803, J. Biol. Chem. 269, 19354-19359.
21. Taylor, M. A., Packer, J. C. L., and Bowyer, J. R. (1988) Processing of the D1 polypeptide of the photosystem II reaction center and photoactivation of a low fluorescent mutant (LF-1) of Scenedesmus obliquus, FEBS Lett. 237, 229-233.
22. Diner, B. A., Ries, D. F., Cohen, B. N., and Metz, J. G. (1988) COOH-terminal processing of polypeptide D1 of the photosystem II reaction center of Scenedesmus obliquus is necessary for the assembly of the oxygen-evolving complex, J. Biol. Chem. 263, 8972-8980.
23. 2- and light-saturated growth conditions, J. Biol. Chem. 267, 17494-17497.
24. 1 to 82 transition: an isotope-edited study, Biochemistry 43, 3152-3166.
25. Mizusawa, N., Kimura, Y., Ishii, A., Yamanari, T., Nakazawa, S., Teramoto, H., and Ono, T.-A. (2004) Impact of replacement of D1 C-terminal alanine with glycine on structure and function of photosynthetic oxygen evolving complex, J. Biol. Chem. 279, 29622-29627.
26. 1 FTIR difference spectrum of oxygen-evolving complex, Biochemistry 42, 13170-13177.
27. Ikeuchi, M., and Inoue, Y. (1988) A new 4.8-kDa polypeptide intrinsic to the PSII reaction center, as revealed by modified SDS-PAGE with improved resolution of low-molecular-weight proteins, Plant Cell Physiol. 29, 1233-1239.
28. Ono, T.-A, and Inoue, Y. (1986) Effects of removal and reconstitution of the extrinsic 33, 24 and 16 kDa proteins on flash oxygen yield in Photosystem II particles, Biochim. Biophys. Acta 850, 380-389.
29. Lakshmi, K. V., Reifler, M. J., Chisholm, D. A., Wang, J. Y., Diner, B. A., and Brudvig, G. W. (2002) Correlation of the cytochrome c550 content of cyanobacterial photosystem II with the EPR properties of the oxygen-evolving complex. Photosynth. Res. 72, 175-189.
30. Yamanari, T., Kimura, Y., Mizusawa, N., Ishii, A., and Ono, T.-A. (2004) Mid- to low-frequency Fourier transform infrared spectra of S-state cycle for photosynthetic oxygen evolution in Synechocystis sp. PCC 6803, Biochemistry 43, 7479-7490.
31. Noguchi, T., and Inoue, Y. (1995) Identification of Fourier transform infrared signals from the non-heme iron in photosystem II, J. Biochem. 118, 9-12.
32. 13C-labeled bicarbonate, Biochemistry 34, 16288-16297.
33. Fukushima, K., Onishi, T., Shimanouchi, T., and Mizushima S. (1959) Assignment of vibration bands of DL-alanine, Spectrochim. Acta 14, 236-241.
34. Percy, G. C., and Stenton, H. S. (1976) Infrared band assignments for 1-alanine and the nickel (II) and Copper (II) complexes of L-and d-alanine, J. Chem. Soc., Dalton Trans. 2429-2433.
35. 2O) solutions. I. Spectral parameters of amino acid residue absorption bands, Biopolymers 30, 1243-1257.
36. Barth, A. (2000) The infrared absorption of amino acid side chains, Prog. Biophys. Mol. Biol. 74, 141-173.
37. Deacon, G. B., and Phillips, R. J. (1980) Relationships between the carbon-oxygen stretching frequencies of carboxylate complexes and the type of carboxylate coordination, Coord. Chem. Rev. 33, 227-250.
38. Nakamoto, K. (1997) Infrared and Raman Spectra of Inorganic and Coordination Compounds, Part B: Applications in Coordination, Organometallic, and Bioinorganic Chemistry, 5th ed., pp 59-62, John Wiley & Sons, New York.