A Comparison between Morphometric and Artificial Neural Network Approaches to the Automated Species Recognition Problem in Systematics

Biodiversity Databases: Techniques, Politics, and Applications

Volumn , Issue , 2016, Pages 37-62

  MacLeod, Norman ^a   O'Neill M ^b   Walsh, Steven A ^a  

^a DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

^b UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85134918427     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1201/9781439832547-5     Document Type: Chapter

References (39)

1. Bishop, C.M. (1995) Neural networks for pattern recognition. Clarendon Press, Oxford.
2. Blackith, R.E. and Reyment, R.A. (1971) Multivariate morphometrics. Academic Press, London.
3. Bolli, H.M. and Saunders, J.B. (1985) Oligocene to Holocene low latitude planktic foraminifera. In Plankton stratigraphy, ed. H.M. Bolli, J.B. Saunders, and K. Perch-Nielsen. Cambridge University Press, Cambridge, 155-262.
4. Bollmann, J., Quinn, P.S., Vela, M., Brabec, M., Brechner, S., Cortés, M.Y., Hilbrecht, H., Schmidt, D.N., Schiebel, R., and Thierstein, H.R. (2004) Automated particle analysis: Calcareous microfossils, ETH, Zurich (http://n.ethz.ch/student/bolle/publications/Bollmann2003DERP.pdf).
5. Bookstein, F.L. (1986) Size and shape spaces for landmark data in two dimensions. Statistical Science 1: 181-242.
6. Bookstein, F.L. (1991) Morphometric tools for landmark data: Geometry and biology. Cambridge University Press, Cambridge.
7. Campbell, N.A. and Atchley, W.R. (1981) The geometry of canonical variate analysis. Systematic Zoology 30: 268-280.
8. Culverhouse, P.F., Williams, R., Reguera, B., Herry, V., and González-Gils, S. (2003) Do experts make mistakes? Marine Ecology Progress Series 247: 17-25.
9. Gaston, K.J. and May, R.M., Taxonomy of taxonomists, Nature 356, 281-282, 1982.
10. Gaston, K.J. and O’Neill, M.A. (in press) Automated species identification - Why not? Philosophical Transactions of the Royal Society of London.
11. Ginsburg, R.N. (1997) An attempt to resolve the controversy over the end-Cretaceous extinction of planktic foraminifera at El Kef, Tunisia, using a blind test. Introduction: Background and procedures. Marine Micropaleontology 29: 67-68.
12. Godfrey, H.C.J. (2002) Challenges for taxonomy. Nature 417: 17-19.
13. Kaesler, R.L. (1993) A window of opportunity: Peering into a new century of paleontology. Journal of Paleontology 67: 329-333.
14. Kennett, J.P. and Srinivasan, S. (1983) Neogene planktonic foraminifera: A phylogenetic atlas. Hutchinson Ross, Stroudsbourg, PA.
15. Lang, R. and Warwick, K. (2002) The plastic self-organizing map. In World conference on computational intelligence.
16. Lucas, S.M. (1997) Face recognition with the continuous n-tuple classifier. In British machine vision conference, 222-231.
17. MacLeod, N. (1998) Impacts and marine invertebrate extinctions. In Meteorites: Flux with time and impact effects, ed. N.M. Grady, R. Hutchinson, G.J.H. McCall, and D.A. Rotherby. Geological Society of London, London, 217-246.
18. MacLeod, N. (1999) Generalizing and extending the eigenshape method of shape visualization and analysis. Paleobiology 25(1): 107-138.
19. MacLeod, N. (2000) PaleoBase: Macrofossils (part 1). Blackwell Science and The Natural History Museum, Oxford.
20. MacLeod, N. (2002a) Morphometric perspectives on the MorphoBank project. In Sixth international congress of systematic and evolutionary biology, ed. M. Michevitch. University of Patras, Patras, Greece, 196.
21. MacLeod, N. (2002b) Phylogenetic signals in morphometric data. In Morphology, shape and phylogeny, ed. N. MacLeod and P.L. Forey. Taylor and Francis, London, 100-138.
22. MacLeod, N. (2003) PaleoBase: Macrofossils (part 2). Blackwell Science and The Natural History Museum, Oxford.
23. MacLeod, N. and Forey, P. (2002) Morphometrics, shape and phylogenetics. Taylor and Francis, London.
24. Marcus, L.F., Bello, E., and García-Valdecasas, A. (1993) Contributions to morphometrics. Museo Nacional de Ciencias Naturales 8, Madrid.
25. Marcus, L.F., Corti, M., Loy, A., Naylor, G.J.P., and Slice, D.E. (1996) Advances in morphometrics. Plenum Press, New York.
26. Neff, N.A. and Marcus, L.F. (1980) A survey of multivariate methods for systematists. Privately published, New York.
27. Pimentel, R.A. (1979) Morphometrics: The multivariate analysis of biological data. Kendall/Hunt, Dubuque, IA.
28. Reyment, R.A., Blackith, R.E., and Campbell, N.A. (1984) Multivariate morphometrics, 2nd ed. Academic Press, London.
29. Ripley, B.D. (1996) Pattern recognition and neural networks. Cambridge University Press, Cambridge.
30. Rohlf, F.J. and Bookstein, F.L. (1990) Proceedings of the Michigan morphometrics workshop. The University of Michigan Museum of Zoology Special Publication 2, Ann Arbor.
31. Schalkoff, R.J. (1997) Artificial neural networks. MIT Press and the McGraw-Hill Companies, Inc., New York.
32. Sokal, R.R. and Sneath, P.A. (1963) Principles of numerical taxonomy. W.H. Freeman, San Francisco.
33. Weeks, P.J.D., Gauld, I.D., Gaston, K.J., and O’Neill, M.A. (1997) Automating the identification of insects: A new solution to an old problem. Bulletin of Entomological Research 87: 203-211.
34. Weeks, P.J.D., O’Neill, M.A., Gaston, K.J., and Gauld, I.D. (1999a) Automating insect identification:Exploring limitations of a prototype system. Journal of Applied Entomology 123: 1-8.
35. Weeks, P.J.D., O’Neill, M.A., Gaston, K.J., and Gauld, I.D. (1999b) Species identification of wasps using principle component associative memories. Image and Vision Computing 17: 861-866.
36. Wheeler, Q.D. (2003) Transforming taxonomy. The Systematist 22: 3-5.
37. Wheeler, Q.D., Raven, P.H., and Wilson, E.O. (2004) Taxonomy, impediment or expedient? Science 303: 285.
38. Young, J.R., Kucera, M., and Cheng, H.-W. (1996) Automated biometrics on captured light microscope images of coccoliths of Emiliana huxleyi. In Microfossils and oceanic environments, ed. A. Moguilevsky and R. Whatley. University of Wales, Aberystwyth, Wales, 261-277.
39. Zachariasse, W.J., Riedel, W.R., Sanfilippo, A., Schmidt, R.R., Brolsma, M.J., Schrader, H.J., Gersonde, R., Drooger, M.M., and Brokeman, J.A. (1978) Micropaleontological counting methods and techniques - An exercise on an eight-meter section of the Lower Pliocene of Capo Rossello, Sicily. Utrecht Micropaleontological Bulletins 17: 1-265.