Metagenomic nanopore sequencing of influenza virus direct from clinical respiratory samples

Journal of Clinical Microbiology

Volumn 58, Issue 1, 2020, Pages

  Lewandowski, Kuiama ^a   Xu, Yifei ^b,c   Pullan, Steven T ^a   Lumley, Sheila F ^c   Foster, Dona ^b,c   Sanderson, Nicholas ^b,c   Vaughan, Alison ^b,c   Morgan, Marcus ^c   Bright, Nicole ^b   Kavanagh, James ^b   Vipond, Richard ^a   Carroll, Miles ^a   Marriott, Anthony C ^a   Gooch, Karen E ^a   Andersson, Monique ^c   Jeffery, Katie ^c   Peto, Timothy E A ^b,c   Crook, Derrick W ^b,c   Sarah Walker, A ^b   Matthews, Philippa C ^b,c  

^a PUBLIC HEALTH ENGLAND   (United Kingdom)

^b UNIVERSITY OF OXFORD   (United Kingdom)

^c JOHN RADCLIFFE HOSPITAL   (United Kingdom)

Author keywords

Diagnosis; Diagnostics; DNA sequencing; Epidemiology; Influenza; Metagenomic; Metagenomics; Molecular epidemiology; Nanopore; Sequencing

Indexed keywords

VIRUS RNA;

ARTICLE; COHORT ANALYSIS; CONTROLLED STUDY; CORONAVIRUS INFECTION; DIAGNOSTIC ACCURACY; DIAGNOSTIC TEST; DIAGNOSTIC TEST ACCURACY STUDY; GENETIC ANALYSIS; HUMAN; HUMAN TISSUE; INFLUENZA VIRUS; INTERMETHOD COMPARISON; LIMIT OF DETECTION; METAGENOMICS; MIXED INFECTION; NONHUMAN; PRIORITY JOURNAL; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS; THROAT CULTURE; VIRUS DETECTION; VIRUS GENOME; VIRUS IDENTIFICATION; VIRUS LOAD; BIOLOGY; CLASSIFICATION; ENGLAND; GENETICS; HIGH THROUGHPUT SEQUENCING; INFLUENZA; ORTHOMYXOVIRIDAE; PHYLOGENY; PROCEDURES; RNA VIRUS; VIROLOGY;

COMPUTATIONAL BIOLOGY; ENGLAND; GENOME, VIRAL; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; INFLUENZA, HUMAN; METAGENOMICS; NANOPORE SEQUENCING; ORTHOMYXOVIRIDAE; PHYLOGENY; RNA VIRUSES; RNA, VIRAL;

EID: 85077224700     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.00963-19     Document Type: Article

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