Genetic transduction by phages and chromosomal islands: The new and noncanonical

PLoS Pathogens

Volumn 15, Issue 8, 2019, Pages

  Chiang, Yin Ning ^a   Penadés, José R ^b   Chen, John ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^b UNIVERSITY OF GLASGOW   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT;

ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL GENE; BACTERIOPHAGE; CELL DIVISION; CHROMOSOME; DNA PACKAGING; DNA REPLICATION; GENE TRANSFER; GENETIC TRANSDUCTION; GENOMIC ISLAND; LIFE CYCLE; LYSOGENIZATION; NONHUMAN; PATHOGENICITY; STAPHYLOCOCCUS AUREUS; BACTERIUM; GENETICS; VIROLOGY; VIRULENCE; VIRUS DNA CELL DNA INTERACTION;

BACTERIA; BACTERIOPHAGES; CHROMOSOMES, BACTERIAL; GENOMIC ISLANDS; TRANSDUCTION, GENETIC; VIRULENCE; VIRUS INTEGRATION;

EID: 85071282672     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1007878     Document Type: Article

References (26)

1. Susskind MM, Botstein D. Molecular genetics of bacteriophage P22. Microbiological reviews. 1978; 42 (2):385-413. PMID: 353481; PubMed Central PMCID: PMC281435.
2. Court DL, Oppenheim AB, Adhya SL. A new look at bacteriophage lambda genetic networks. Journal of bacteriology. 2007; 189(2):298-304. https://doi.org/10.1128/JB.01215-06 PMID: 17085553; PubMed Central PMCID: PMC1797383.
3. Rao VB, Feiss M. Mechanisms of DNA Packaging by Large Double-Stranded DNA Viruses. Annual review of virology. 2015; 2(1):351-78. https://doi.org/10.1146/annurev-virology-100114-055212 PMID: 26958920; PubMed Central PMCID: PMC4785836.
4. Streisinger G, Edgar RS, Denhardt GH. Chromosome Structure in Phage T4. I. Circularity of the Linkage Map. Proceedings of the National Academy of Sciences of the United States of America. 1964; 51:775-9. https://doi.org/10.1073/pnas.51.5.775 PMID: 14172990; PubMed Central PMCID: PMC300161.
5. Streisinger G, Emrich J, Stahl MM. Chromosome structure in phage t4, iii. Terminal redundancy and length determination. Proceedings of the National Academy of Sciences of the United States of America. 1967; 57(2):292-5. https://doi.org/10.1073/pnas.57.2.292 PMID: 16591467; PubMed Central PMCID: PMC335503.
6. Feiss M, Siegele DA. Packaging of the bacteriophage lambda chromosome: Dependence of cos cleavage on chromosome length. Virology. 1979; 92(1):190-200. https://doi.org/10.1016/0042-6822(79) 90224-1 PMID: 419690.
7. Casjens S, Hayden M. Analysis in vivo of the bacteriophage P22 headful nuclease. Journal of molecular biology. 1988; 199(3):467-74. https://doi.org/10.1016/0022-2836(88)90618-3 PMID: 3280806.
8. Zinder ND, Lederberg J. Genetic exchange in Salmonella. Journal of bacteriology. 1952; 64(5):679-99. PMID: 12999698; PubMed Central PMCID: PMC169409.
9. Schmieger H. The fate of the bacterial chromosome in P22-infected cells of Salmonella typhimurium. Molecular & general genetics: MGG. 1971; 110(3):238-44. PMID: 4929818.
10. Schmieger H, Buch U. Appearance of transducing particles and the fate of host DNA after infection of Salmonella typhimurium with P22-mutants with increased transducing ability (HT-mutants). Molecular & general genetics: MGG. 1975; 140(2):111-22. PMID: 1105152.
11. Chelala CA, Margolin P. Evidence that HT mutant strains of bacteriophage P22 retain an altered form of substrate specificity in the formation of transducing particles in Salmonella typhimurium. Genetical research. 1976; 27(2):315-22. PMID: 776744.
12. Schmieger H. Packaging signals for phage P22 on the chromosome of Salmonella typhimurium. Molecular & general genetics: MGG. 1982; 187(3):516-8. PMID: 6757664.
13. Thierauf A, Perez G, Maloy AS. Generalized transduction. Methods Mol Biol. 2009; 501:267-86. Epub 2008/12/11. https://doi.org/10.1007/978-1-60327-164-6_23 PMID: 19066827.
14. Morse ML, Lederberg EM, Lederberg J. Transduction in Escherichia Coli K-12. Genetics. 1956; 41 (1):142-56. PMID: 17247607; PubMed Central PMCID: PMC1209761.
15. Kwoh DY, Kemper J. Bacteriophage P22-mediated specialized transduction in Salmonella typhimurium: Identification of different types of specialized transducing particles. J Virol. 1978; 27(3):535-50. Epub 1978/09/01. PMID: 359828; PubMed Central PMCID: PMC525840.
16. Kwoh DY, Kemper J. Bacteriophage P22-mediated specialized transduction in Salmonella typhimurium: High frequency of aberrant prophage excision. J Virol. 1978; 27(3):519-34. Epub 1978/09/01. PMID: 359827; PubMed Central PMCID: PMC525839.
17. Chen J, Quiles-Puchalt N, Chiang YN, Bacigalupe R, Fillol-Salom A, Chee MSJ, et al. Genome hypermobility by lateral transduction. Science. 2018; 362(6411):207-12. https://doi.org/10.1126/science. aat5867 PMID: 30309949.
18. Davidson AR. A common trick for transferring bacterial DNA. Science. 2018; 362(6411):152-3. https://doi.org/10.1126/science.aav1723 PMID: 30309931.
19. Penades JR, Christie GE. The Phage-Inducible Chromosomal Islands: A Family of Highly Evolved Molecular Parasites. Annual review of virology. 2015; 2(1):181-201. https://doi.org/10.1146/annurevvirology-031413-085446 PMID: 26958912.
20. Novick RP, Ram G. The Floating (Pathogenicity) Island: A Genomic Dessert. Trends in genetics: TIG. 2016; 32(2):114-26. https://doi.org/10.1016/j.tig.2015.11.005 PMID: 26744223; PubMed Central PMCID: PMC4733582.
21. Chen J, Novick RP. Phage-mediated intergeneric transfer of toxin genes. Science. 2009; 323 (5910):139-41. https://doi.org/10.1126/science.1164783 PMID: 19119236.
22. Chen J, Carpena N, Quiles-Puchalt N, Ram G, Novick RP, Penades JR. Intra- and inter-generic transfer of pathogenicity island-encoded virulence genes by cos phages. The ISME journal. 2015; 9(5):1260-3. https://doi.org/10.1038/ismej.2014.187 PMID: 25314321; PubMed Central PMCID: PMC4409152.
23. Fillol-Salom A, Martinez-Rubio R, Abdulrahman RF, Chen J, Davies R, Penades JR. Phage-inducible chromosomal islands are ubiquitous within the bacterial universe. The ISME journal. 2018; 12(9):2114-28. https://doi.org/10.1038/s41396-018-0156-3 PMID: 29875435; PubMed Central PMCID: PMC6092414.
24. Martinez-Rubio R, Quiles-Puchalt N, Marti M, Humphrey S, Ram G, Smyth D, et al. Phage-inducible islands in the Gram-positive cocci. The ISME journal. 2017; 11(4):1029-42. https://doi.org/10.1038/ismej.2016.163 PMID: 27959343; PubMed Central PMCID: PMC5363835.
25. Chen J, Ram G, Penades JR, Brown S, Novick RP. Pathogenicity island-directed transfer of unlinked chromosomal virulence genes. Molecular cell. 2015; 57(1):138-49. https://doi.org/10.1016/j.molcel. 2014.11.011 PMID: 25498143; PubMed Central PMCID: PMC4289434.
26. Haaber J, Leisner JJ, Cohn MT, Catalan-Moreno A, Nielsen JB, Westh H, et al. Bacterial viruses enable their host to acquire antibiotic resistance genes from neighbouring cells. Nat Commun. 2016; 7:13333. Epub 2016/11/08. https://doi.org/10.1038/ncomms13333 PMID: 27819286; PubMed Central PMCID: PMC5103068.