메뉴 건너뛰기




Volumn 26, Issue 3, 2019, Pages 195-203

De novo whole-genome assembly in Chrysanthemum seticuspe, a model species of Chrysanthemums, and its application to genetic and gene discovery analysis

Author keywords

Chrysanthemum seticuspe; flowering genes; genome sequence assembly; linkage map

Indexed keywords

ARTICLE; CHRYSANTHEMUM; CLINICAL ARTICLE; CONTROLLED STUDY; FLOWER DEVELOPMENT; GENETIC LINKAGE; GENOME ANALYSIS; HUMAN CELL; NONHUMAN; SINGLE NUCLEOTIDE POLYMORPHISM; CHROMOSOMAL MAPPING; GENETIC POLYMORPHISM; GENETICS; MOLECULAR GENETICS; PHYLOGENY; PLANT GENOME; WHOLE GENOME SEQUENCING;

EID: 85068425004     PISSN: 13402838     EISSN: 17561663     Source Type: Journal    
DOI: 10.1093/dnares/dsy048     Document Type: Article
Times cited : (73)

References (33)
  • 1
    • 0000434063 scopus 로고
    • Effect of the relative length of day and night and other factors of the environment on growth and reproduction in plants
    • Garner, W.W. and Allard, H.A. 1920, Effect of the relative length of day and night and other factors of the environment on growth and reproduction in plants, J. Agric. Res., 18, 553-606.
    • (1920) J. Agric. Res. , vol.18 , pp. 553-606
    • Garner, W.W.1    Allard, H.A.2
  • 2
    • 0010441478 scopus 로고
    • New facts in support of the hormonal theory of plant development
    • Chailakhyan, M.K. 1936, New facts in support of the hormonal theory of plant development, Dokl, Akad. Nauk. SSSR, 13, 79-83.
    • (1936) Dokl, Akad. Nauk. SSSR , vol.13 , pp. 79-83
    • Chailakhyan, M.K.1
  • 3
    • 84885724218 scopus 로고
    • Studies on the regulation of Chrysanthemum flowering with special reference to plant regulators, I. The inhibiting action of non-induced leaves on floral stimulus
    • Tanaka, T. 1967, Studies on the regulation of Chrysanthemum flowering with special reference to plant regulators, I. The inhibiting action of non-induced leaves on floral stimulus, J. Japan. Soc. Hort. Sci., 36, 77-85.
    • (1967) J. Japan. Soc. Hort. Sci. , vol.36 , pp. 77-85
    • Tanaka, T.1
  • 4
    • 34948866143 scopus 로고    scopus 로고
    • Move on up, it's time for change-mobile signals controlling photoperiod-dependent flowering
    • Kobayashi, Y. and Weigel, D. 2007, Move on up, it's time for change-mobile signals controlling photoperiod-dependent flowering, Genes Dev., 21, 2371-84.
    • (2007) Genes Dev. , vol.21 , pp. 2371-2384
    • Kobayashi, Y.1    Weigel, D.2
  • 5
    • 51649102244 scopus 로고    scopus 로고
    • Leaf-produced floral signals
    • Zeevaart, J.A. 2008, Leaf-produced floral signals, Curr. Opin. Plant Biol., 11, 541-7.
    • (2008) Curr. Opin. Plant Biol. , vol.11 , pp. 541-547
    • Zeevaart, J.A.1
  • 6
    • 80052902594 scopus 로고    scopus 로고
    • Long-distance regulation of flowering time
    • Turnbull, C. 2011, Long-distance regulation of flowering time, J. Exp. Bot., 62, 4399-413.
    • (2011) J. Exp. Bot. , vol.62 , pp. 4399-4413
    • Turnbull, C.1
  • 7
    • 84859628937 scopus 로고    scopus 로고
    • Manipulating plant architecture with members of the CETS gene family
    • McGarry, R.C. and Ayre, B.G. 2012, Manipulating plant architecture with members of the CETS gene family, Plant Sci., 188-189, 71-81.
    • (2012) Plant Sci. , vol.188-189 , pp. 71-81
    • McGarry, R.C.1    Ayre, B.G.2
  • 8
    • 84863141176 scopus 로고    scopus 로고
    • CsFTL3, a chrysanthemum FLOWERING LOCUS T-like gene, is a key regulator of photoperiodic flowering in chrysanthemums
    • Oda, A., Narumi, T., Li, T., et al. 2012, CsFTL3, a chrysanthemum FLOWERING LOCUS T-like gene, is a key regulator of photoperiodic flowering in chrysanthemums, J. Exp. Bot., 63, 1461-77.
    • (2012) J. Exp. Bot. , vol.63 , pp. 1461-1477
    • Oda, A.1    Narumi, T.2    Li, T.3
  • 9
    • 84885808314 scopus 로고    scopus 로고
    • The gated induction of a systemic floral inhibitor, antiflorigen, determines obligate short-day flowering in chrysanthemums
    • Higuchi, Y., Narumi, T., Oda, A., et al. 2013, The gated induction of a systemic floral inhibitor, antiflorigen, determines obligate short-day flowering in chrysanthemums, Proc. Natl. Acad. Sci. USA, 110, 17137-42.
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 17137-17142
    • Higuchi, Y.1    Narumi, T.2    Oda, A.3
  • 10
    • 85027110577 scopus 로고    scopus 로고
    • Conclusive evidence for hexasomic inheritance in chrysanthemum based on analysis of a 183 k SNP array
    • Van Geest, G., Voorrips, R.E., Esselink, D., Post, A., Visser, R.G.F. and Arens, P. 2017, Conclusive evidence for hexasomic inheritance in chrysanthemum based on analysis of a 183 k SNP array, BMC Genomics, 18, 585.
    • (2017) BMC Genomics , vol.18 , pp. 585
    • Van Geest, G.1    Voorrips, R.E.2    Esselink, D.3    Post, A.4    Visser, R.G.F.5    Arens, P.6
  • 11
    • 85028746306 scopus 로고    scopus 로고
    • An ultra-dense integrated linkage map for hexaploid chrysanthemum enables multi-allelic QTL analysis
    • Van Geest, G., Bourke, P.M., Voorrips, R.E., et al. 2017, An ultra-dense integrated linkage map for hexaploid chrysanthemum enables multi-allelic QTL analysis, Theor. Appl. Genet., 130, 2527-41.
    • (2017) Theor. Appl. Genet. , vol.130 , pp. 2527-2541
    • Van Geest, G.1    Bourke, P.M.2    Voorrips, R.E.3
  • 12
    • 3042540154 scopus 로고
    • Genetic studies of self-incompatibility in the garden chrysanthemum, Chrysanthemum morifolium Ramat
    • Drewlow, L.W., Ascher, P.D. and Widmer, R.E. 1973, Genetic studies of self-incompatibility in the garden chrysanthemum, Chrysanthemum morifolium Ramat, Theor. Appl. Genet., 43, 1-5.
    • (1973) Theor. Appl. Genet. , vol.43 , pp. 1-5
    • Drewlow, L.W.1    Ascher, P.D.2    Widmer, R.E.3
  • 13
    • 3342970588 scopus 로고    scopus 로고
    • New combinations in Chrysanthemum (Compositae-Anthemideae) of Asia with a list of Japanese species
    • Ohashi, H. and Yonekura, K. 2004, New combinations in Chrysanthemum (Compositae-Anthemideae) of Asia with a list of Japanese species, J. Japan. Bot., 79, 186-95.
    • (2004) J. Japan. Bot. , vol.79 , pp. 186-195
    • Ohashi, H.1    Yonekura, K.2
  • 14
    • 0040888707 scopus 로고    scopus 로고
    • Application of RAPD analysis in the study on the origin of Chinese cultivated chrysanthemum
    • Dai, S.L., Chen, J.Y. and Li, W.B. 1998, Application of RAPD analysis in the study on the origin of Chinese cultivated chrysanthemum, Acta Bot. Sin., 40, 1053-9.
    • (1998) Acta Bot. Sin. , vol.40 , pp. 1053-1059
    • Dai, S.L.1    Chen, J.Y.2    Li, W.B.3
  • 15
    • 33746787592 scopus 로고    scopus 로고
    • Molecular evidence for multiple polyploidization and lineage recombination in the Chrysanthemum indicum polyploid complex (Asteraceae)
    • Yang, W., Glover, B.J., Rao, G.Y. and Yang, J. 2006, Molecular evidence for multiple polyploidization and lineage recombination in the Chrysanthemum indicum polyploid complex (Asteraceae), New Phytol., 171, 875-86.
    • (2006) New Phytol. , vol.171 , pp. 875-886
    • Yang, W.1    Glover, B.J.2    Rao, G.Y.3    Yang, J.4
  • 16
    • 84902990201 scopus 로고    scopus 로고
    • Sequence analysis of the genome of carnation (Dianthus caryophyllus L.)
    • Yagi, M., Kosugi, S., Hirakawa, H., et al. 2014, Sequence analysis of the genome of carnation (Dianthus caryophyllus L.), DNA Res., 21, 231-41.
    • (2014) DNA Res. , vol.21 , pp. 231-241
    • Yagi, M.1    Kosugi, S.2    Hirakawa, H.3
  • 17
    • 78651327629 scopus 로고    scopus 로고
    • The Sol Genomics Network (solgenomics.net): Growing tomatoes using Perl
    • Bombarely, A., Menda, N., Tecle, I.Y., et al. 2011, The Sol Genomics Network (solgenomics.net): Growing tomatoes using Perl, Nucleic Acids Res., 39, D1149-55.
    • (2011) Nucleic Acids Res. , vol.39 , pp. D1149-D1155
    • Bombarely, A.1    Menda, N.2    Tecle, I.Y.3
  • 18
    • 33748760611 scopus 로고    scopus 로고
    • The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    • Tuskan, G.A., Difazio, S., Jansson, S., et al. 2006, The genome of black cottonwood, Populus trichocarpa (Torr. & Gray), Science, 313, 1596-604.
    • (2006) Science , vol.313 , pp. 1596-1604
    • Tuskan, G.A.1    Difazio, S.2    Jansson, S.3
  • 19
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • International Rice Genome Sequencing Project.
    • International Rice Genome Sequencing Project. 2005, The map-based sequence of the rice genome, Nature, 436, 793-800.
    • (2005) Nature , vol.436 , pp. 793-800
  • 20
    • 79960422847 scopus 로고    scopus 로고
    • Genome sequence and analysis of the tuber crop potato
    • The Potato Genome Sequencing Consortium.
    • The Potato Genome Sequencing Consortium. 2011, Genome sequence and analysis of the tuber crop potato, Nature, 475, 189-95.
    • (2011) Nature , vol.475 , pp. 189-195
  • 21
    • 84965108326 scopus 로고    scopus 로고
    • Analytical workflow of double-digest restriction site-associated DNA sequencing based on empirical and in silico optimization in tomato
    • Shirasawa, K., Hirakawa, H. and Isobe, S. 2016, Analytical workflow of double-digest restriction site-associated DNA sequencing based on empirical and in silico optimization in tomato, DNA Res., 23, 145-53.
    • (2016) DNA Res. , vol.23 , pp. 145-153
    • Shirasawa, K.1    Hirakawa, H.2    Isobe, S.3
  • 22
    • 84874455888 scopus 로고    scopus 로고
    • Construction of an integrated high density simple sequence repeat linkage map in cultivated strawberry (Fragaria _ ananassa) and its applicability
    • Isobe, S.N., Hirakawa, H., Sato, S., et al. 2013, Construction of an integrated high density simple sequence repeat linkage map in cultivated strawberry (Fragaria _ ananassa) and its applicability, DNA Res., 20, 79-92.
    • (2013) DNA Res. , vol.20 , pp. 79-92
    • Isobe, S.N.1    Hirakawa, H.2    Sato, S.3
  • 23
    • 85017430250 scopus 로고    scopus 로고
    • Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce
    • Reyes-Chin-Wo, S., Wang, Z., Yang, X., et al. 2017, Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce, Nat. Commun., 8, 14953.
    • (2017) Nat. Commun. , vol.8 , pp. 14953
    • Reyes-Chin-Wo, S.1    Wang, Z.2    Yang, X.3
  • 24
    • 85020219786 scopus 로고    scopus 로고
    • The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution
    • Badouin, H., Gouzy, J., Grassa, C.J., et al. 2017, The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution, Nature, 546, 148-52.
    • (2017) Nature , vol.546 , pp. 148-152
    • Badouin, H.1    Gouzy, J.2    Grassa, C.J.3
  • 25
    • 84868683197 scopus 로고    scopus 로고
    • Day light quality affects the night-break response in the short-day plant chrysanthemum, suggesting differential phytochrome-mediated regulation of flowering
    • Higuchi, Y., Sumitomo, K., Oda, A., Shimizu, H. and Hisamatsu, T. 2012, Day light quality affects the night-break response in the short-day plant chrysanthemum, suggesting differential phytochrome-mediated regulation of flowering, J. Plant Physiol., 169, 1789-96.
    • (2012) J. Plant Physiol. , vol.169 , pp. 1789-1796
    • Higuchi, Y.1    Sumitomo, K.2    Oda, A.3    Shimizu, H.4    Hisamatsu, T.5
  • 26
    • 84874698216 scopus 로고    scopus 로고
    • Flowering retardation by high temperature in chrysanthemums: Involvement of FLOWERING LOCUS T-like 3 gene repression
    • Nakano, Y., Higuchi, Y., Sumitomo, K. and Hisamatsu, T. 2013, Flowering retardation by high temperature in chrysanthemums: Involvement of FLOWERING LOCUS T-like 3 gene repression, J. Exp. Bot., 64, 909-20.
    • (2013) J. Exp. Bot. , vol.64 , pp. 909-920
    • Nakano, Y.1    Higuchi, Y.2    Sumitomo, K.3    Hisamatsu, T.4
  • 27
    • 84929168451 scopus 로고    scopus 로고
    • CsTFL1, a constitutive local repressor of flowering, modulates floral initiation by antagonising florigen complex activity in chrysanthemum
    • Higuchi, Y. and Hisamatsu, T. 2015, CsTFL1, a constitutive local repressor of flowering, modulates floral initiation by antagonising florigen complex activity in chrysanthemum, Plant Sci., 237, 1-7.
    • (2015) Plant Sci. , vol.237 , pp. 1-7
    • Higuchi, Y.1    Hisamatsu, T.2
  • 28
    • 84897102432 scopus 로고    scopus 로고
    • Structural features determining flower-promoting activity of Arabidopsis FLOWERING LOCUS T
    • Ho, W.W. and Weigel, D. 2014, Structural features determining flower-promoting activity of Arabidopsis FLOWERING LOCUS T, Plant Cell, 26, 552-64.
    • (2014) Plant Cell , vol.26 , pp. 552-564
    • Ho, W.W.1    Weigel, D.2
  • 29
    • 85030566029 scopus 로고    scopus 로고
    • Seasonal variability in dormancy and flowering competence in Chrysanthemum: Chilling impacts on shoot extension growth and flowering capacity
    • Hisamatsu, T., Sumitomo, K., Shibata, M. and Koshioka, M. 2017, Seasonal variability in dormancy and flowering competence in Chrysanthemum: Chilling impacts on shoot extension growth and flowering capacity, JARQ, 51, 343-50.
    • (2017) JARQ , vol.51 , pp. 343-350
    • Hisamatsu, T.1    Sumitomo, K.2    Shibata, M.3    Koshioka, M.4
  • 30
    • 43049100301 scopus 로고    scopus 로고
    • The value of sampling anomalous taxa in phylogenetic studies: Major clades of the Asteraceae revealed
    • Panero, J.L. and Funk, V.A. 2008, The value of sampling anomalous taxa in phylogenetic studies: Major clades of the Asteraceae revealed, Mol. Phylogenet. Evol., 47, 757-82.
    • (2008) Mol. Phylogenet. Evol. , vol.47 , pp. 757-782
    • Panero, J.L.1    Funk, V.A.2
  • 31
    • 85048322737 scopus 로고    scopus 로고
    • A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits
    • Hibrand-Saint Oyant, L., Ruttink, T., Hamama, L., et al. 2018, A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits, Nat. Plants, 4, 473-84.
    • (2018) Nat. Plants , vol.4 , pp. 473-484
    • Hibrand-Saint Oyant, L.1    Ruttink, T.2    Hamama, L.3
  • 32
    • 84899077311 scopus 로고    scopus 로고
    • Dissection of the octoploid strawberry genome by deep sequencing of the genomes of Fragaria species
    • Hirakawa, H., Shirasawa, K., Kosugi, S., et al. 2014, Dissection of the octoploid strawberry genome by deep sequencing of the genomes of Fragaria species, DNA Res., 21, 169-81.
    • (2014) DNA Res. , vol.21 , pp. 169-181
    • Hirakawa, H.1    Shirasawa, K.2    Kosugi, S.3
  • 33
    • 85014953118 scopus 로고    scopus 로고
    • A high-density SNP genetic map consisting of a complete set of homologous groups in autohexaploid sweetpotato (Ipomoea batatas)
    • Shirasawa, K., Tanaka, M., Takahata, Y., et al. 2017, A high-density SNP genetic map consisting of a complete set of homologous groups in autohexaploid sweetpotato (Ipomoea batatas), Sci. Rep., 7, 44207.
    • (2017) Sci. Rep. , vol.7 , pp. 44207
    • Shirasawa, K.1    Tanaka, M.2    Takahata, Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.