Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries

Clinical Microbiology and Infection

Volumn 25, Issue 10, 2019, Pages 1277-1285

  Asplund, M ^a   Kjartansdottir K R ^a   Mollerup, S ^a   Vinner, L ^a   Fridholm, H ^a,b   Herrera, J A R ^c,d   Friis Nielsen, J ^d   Hansen, T A ^a   Jensen, R H ^a   Nielsen, I B ^a   Richter, S R ^a   Rey Iglesia, A ^a   Matey Hernandez, M L ^d   Alquezar Planas, D E ^a   Olsen, P V S ^a   Sicheritz Ponten T ^a,e   Willerslev, E ^a   Lund, O ^d   Brunak, S ^c,d   Mourier, T ^a   Nielsen, L P ^b   Izarzugaza, J M G ^d   Hansen, A J ^a   more..

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b STATENS SERUM INSTITUT   (Denmark)

^c UNIVERSITY OF COPENHAGEN   (Denmark)

^d TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^e AIMST UNIVERSITY   (Malaysia)

Author keywords

Cluster; Contamination; High throughput sequencing; Laboratory component; Metagenomic; Next generation sequencing; Nucleic acid; Virome; Virus

Indexed keywords

CIRCULAR DNA; MESSENGER RNA; VIRUS DNA; VIRUS RNA;

ARTICLE; BACTERIOPHAGE; CHLOROPLAST GENOME; COMPARATIVE STUDY; CONTROLLED STUDY; DISEASE ASSOCIATION; GENE SEQUENCE; GENETIC LINKAGE; HIGH THROUGHPUT SEQUENCING; HUMAN; LABORATORY TEST; MAJOR CLINICAL STUDY; METAGENOME; NONHUMAN; PREVALENCE; PRIORITY JOURNAL; VIRAL CONTAMINATION; GENETICS; ISOLATION AND PURIFICATION; METAGENOMICS; PROCEDURES; SPECIMEN HANDLING; VIRUS;

HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; METAGENOMICS; SPECIMEN HANDLING; VIRUSES;

EID: 85066311413     PISSN: 1198743X     EISSN: 14690691     Source Type: Journal    
DOI: 10.1016/j.cmi.2019.04.028     Document Type: Article

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