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Volumn 374, Issue 1775, 2019, Pages

Virus epidemics, plant-controlled population bottlenecks and the durability of plant resistance

Author keywords

Population bottleneck; Qualitative resistance; Quantitative resistance; Resistance durability; Stochastic epidemic model; Yield increase

Indexed keywords

AGRICULTURAL ECOSYSTEM; BREEDING; CULTIVAR; DISEASE RESISTANCE; EPIDEMIC; INFECTIOUS DISEASE; INNOVATION; MARKOV CHAIN; NUMERICAL MODEL; POPULATION BOTTLENECK; QUALITATIVE ANALYSIS; QUANTITATIVE ANALYSIS; STOCHASTICITY; VIRUS;

EID: 85065445369     PISSN: 09628436     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rstb.2018.0263     Document Type: Article
Times cited : (17)

References (41)
  • 1
    • 0036269078 scopus 로고    scopus 로고
    • Durability of resistance against fungal, bacterial and viral pathogens; present situation
    • Parlevliet JE. 2002 Durability of resistance against fungal, bacterial and viral pathogens; present situation. Euphytica 124, 147-156. (doi:10.1023/ A:1015601731446)
    • (2002) Euphytica , vol.124 , pp. 147-156
    • Parlevliet, J.E.1
  • 2
    • 18844479256 scopus 로고    scopus 로고
    • An analysis of the durability of resistance to plant viruses
    • García-Arenal F, McDonald BA. 2003 An analysis of the durability of resistance to plant viruses. Phytopathology 93, 941-952. (doi:10.1094/PHYTO. 2003.93.8.941)
    • (2003) Phytopathology , vol.93 , pp. 941-952
    • García-Arenal, F.1    McDonald, B.A.2
  • 3
    • 84937616377 scopus 로고    scopus 로고
    • Durable resistance of crops to disease: A Darwinian perspective
    • Brown JKM. 2015 Durable resistance of crops to disease: a Darwinian perspective. Annu. Rev. Phytopathol. 53, 24.1-24.27. (doi:10.1146/ annurev-phyto-102313-045914)
    • (2015) Annu. Rev. Phytopathol. , vol.53 , pp. 241-2427
    • Brown, J.K.M.1
  • 4
    • 24944552024 scopus 로고    scopus 로고
    • Genetics of plant virus resistance
    • Kang BC, Yeam I, Jahn MM. 2005 Genetics of plant virus resistance. Annu. Rev. Phytopathol. 43, 581-621. (doi:10.1146/annurev.phyto.43.011205. 141140)
    • (2005) Annu. Rev. Phytopathol. , vol.43 , pp. 581-621
    • Kang, B.C.1    Yeam, I.2    Jahn, M.M.3
  • 5
    • 84868488770 scopus 로고    scopus 로고
    • Variation and selection of quantitative traits in plant pathogens
    • Lannou C. 2012 Variation and selection of quantitative traits in plant pathogens. Annu. Rev. Phytopathol. 50, 319-38. (doi:10.1146/annurev-phyto-081211-173031)
    • (2012) Annu. Rev. Phytopathol. , vol.50 , pp. 319-338
    • Lannou, C.1
  • 6
    • 66649113742 scopus 로고    scopus 로고
    • Durability of plant major resistance genes to pathogens depends on the genetic background, experimental evidence and consequences for breeding strategies
    • Palloix A, Ayme V, Moury B. 2009 Durability of plant major resistance genes to pathogens depends on the genetic background, experimental evidence and consequences for breeding strategies. New Phytol. 183, 190-199. (doi:10.1111/j.1469-8137.2009.02827.x)
    • (2009) New Phytol , vol.183 , pp. 190-199
    • Palloix, A.1    Ayme, V.2    Moury, B.3
  • 7
    • 84871744891 scopus 로고    scopus 로고
    • Farther, slower, stronger: How the plant genetic background protects a major resistance gene from breakdown
    • Quenouille J, Montarry J, Palloix A, Moury B. 2013 Farther, slower, stronger: how the plant genetic background protects a major resistance gene from breakdown. Mol. Plant Pathol. 14, 109-118. (doi:10.1111/j.1364-3703. 2012.00834.x)
    • (2013) Mol. Plant Pathol. , vol.14 , pp. 109-118
    • Quenouille, J.1    Montarry, J.2    Palloix, A.3    Moury, B.4
  • 8
    • 52749098548 scopus 로고    scopus 로고
    • The fixation probability of beneficial mutations
    • Patwa Z, Wahl LM. 2008 The fixation probability of beneficial mutations. J. R. Soc. Interface 5, 1279-1289. (doi:10.1098/rsif.2008.0248)
    • (2008) J. R. Soc. Interface , vol.5 , pp. 1279-1289
    • Patwa, Z.1    Wahl, L.M.2
  • 9
    • 77951593683 scopus 로고    scopus 로고
    • Beneficial mutations and the dynamics of adaptation in asexual populations
    • Sniegowski PD, Gerrish PJ. 2010 Beneficial mutations and the dynamics of adaptation in asexual populations. Phil. Trans. R. Soc. B 365, 1255-1263. (doi:10.1098/rstb.2009.0290)
    • (2010) Phil. Trans. R. Soc. B , vol.365 , pp. 1255-1263
    • Sniegowski, P.D.1    Gerrish, P.J.2
  • 10
    • 84938676992 scopus 로고    scopus 로고
    • Playing on a pathogen's weakness: Using evolution to guide sustainable plant disease control strategies
    • Zhan J, Thrall PH, Papaïx J, Xie L, Burdon JJ. 2015 Playing on a pathogen's weakness: using evolution to guide sustainable plant disease control strategies. Annu. Rev. Phytopathol. 53, 2.1-2.25. (doi:10. 1146/annurev-phyto-080614-120040)
    • (2015) Annu. Rev. Phytopathol. , vol.53 , pp. 21-225
    • Zhan, J.1    Thrall, P.H.2    Papaïx, J.3    Xie, L.4    Burdon, J.J.5
  • 11
    • 60349093708 scopus 로고    scopus 로고
    • Effective population size and patterns of molecular evolution and variation
    • Charlesworth B. 2009 Effective population size and patterns of molecular evolution and variation. Nat. Rev. Genet. 10, 195-205. (doi:10.1038/nrg2526)
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 195-205
    • Charlesworth, B.1
  • 12
    • 84867403054 scopus 로고    scopus 로고
    • Virus population bottlenecks during within-host progression and host-to-host transmission
    • Gutiérrez S, Michalakis Y, Blanc S. 2012 Virus population bottlenecks during within-host progression and host-to-host transmission. Curr. Opin. Virol. 2, 546-555. (doi:10.1016/j.coviro.2012. 08.001)
    • (2012) Curr. Opin. Virol. , vol.2 , pp. 546-555
    • Gutiérrez, S.1    Michalakis, Y.2    Blanc, S.3
  • 13
    • 84969264802 scopus 로고    scopus 로고
    • Matters of size: Genetic bottlenecks in virus infection and their potential impact on evolution
    • Zwart MP, Elena SF. 2015 Matters of size: genetic bottlenecks in virus infection and their potential impact on evolution. Annu. Rev. Phytopathol. 2, 161-179. (doi:10.1146/annurev-virology-100114-055135)
    • (2015) Annu. Rev. Phytopathol. , vol.2 , pp. 161-179
    • Zwart, M.P.1    Elena, S.F.2
  • 14
    • 79960939505 scopus 로고    scopus 로고
    • One is enough: In vivo effective population size is dose-dependent for a plant RNA virus
    • Zwart MP, Daròs JA, Elena SF. 2011 One is enough: in vivo effective population size is dose-dependent for a plant RNA virus. PLOS Pathog. 7, e1002122. (doi:10.1371/journal.ppat.1002122)
    • (2011) PLOS Pathog , vol.7
    • Zwart, M.P.1    Daròs, J.A.2    Elena, S.F.3
  • 15
    • 85026666068 scopus 로고    scopus 로고
    • Quantitative trait loci in pepper control the effective population size of two RNA viruses at inoculation
    • Tamisier L et al. 2017 Quantitative trait loci in pepper control the effective population size of two RNA viruses at inoculation. J. Gen. Virol. 98, 1923-1931. (doi:10.1099/jgv.0.000835)
    • (2017) J. Gen. Virol. , vol.98 , pp. 1923-1931
    • Tamisier, L.1
  • 17
    • 36749045200 scopus 로고    scopus 로고
    • Estimation of the number of virus particles transmitted by an insect vector
    • Moury B, Fabre F, Senoussi R. 2007 Estimation of the number of virus particles transmitted by an insect vector. Proc. Natl Acad. Sci. USA 104, 17 891-17 896. (doi:10.1073/pnas.0702739104)
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 17891-17896
    • Moury, B.1    Fabre, F.2    Senoussi, R.3
  • 18
    • 57349095446 scopus 로고    scopus 로고
    • Estimation of the effective number of founders that initiate an infection after aphid transmission of a multipartite plant virus
    • Betancourt M, Fereres A, Fraile A, García-Arenal F. 2008 Estimation of the effective number of founders that initiate an infection after aphid transmission of a multipartite plant virus. J. Virol. 82, 12 416-12 421. (doi:10.1128/JVI.01542-08)
    • (2008) J. Virol. , vol.82 , pp. 12416-12421
    • Betancourt, M.1    Fereres, A.2    Fraile, A.3    García-Arenal, F.4
  • 19
    • 84936817692 scopus 로고    scopus 로고
    • Analysis of bottlenecks in experimental models of infection
    • Abel S, zur Wiesch PA, Davis BM, Waldor MK. 2015 Analysis of bottlenecks in experimental models of infection. PLoS Pathog. 11, e1004823. (doi:10.1371/ journal.ppat.1004823)
    • (2015) PLoS Pathog , vol.11
    • Abel, S.1    Zur Wiesch, P.A.2    Davis, B.M.3    Waldor, M.K.4
  • 20
    • 84872675887 scopus 로고    scopus 로고
    • Heterogeneity of selection and the evolution of resistance
    • REX Consortium. 2013 Heterogeneity of selection and the evolution of resistance. Trends Ecol. Evol. 28, 110-118. (doi:10.1371/journal.ppat.1004823)
    • (2013) Trends Ecol. Evol. , vol.28 , pp. 110-118
  • 21
    • 85055481605 scopus 로고    scopus 로고
    • Impact of genetic drift, selection and accumulation level on virus adaptation to its host plants
    • Rousseau E et al. 2018 Impact of genetic drift, selection and accumulation level on virus adaptation to its host plants. Mol. Plant Pathol. 19, 2575-2589. (doi:10.1111/mpp.12730)
    • (2018) Mol. Plant Pathol. , vol.19 , pp. 2575-2589
    • Rousseau, E.1
  • 22
    • 84906330495 scopus 로고    scopus 로고
    • Pathogen growth in insect hosts: Inferring the importance of different mechanisms using stochastic models and response-time data
    • Kennedy DA, Dukic V, Dwyer G. 2014 Pathogen growth in insect hosts: inferring the importance of different mechanisms using stochastic models and response-time data. Am. Nat. 184, 417-423. (doi:10.1086/677308)
    • (2014) Am. Nat. , vol.184 , pp. 417-423
    • Kennedy, D.A.1    Dukic, V.2    Dwyer, G.3
  • 23
    • 84873489193 scopus 로고    scopus 로고
    • Durable resistance to crop pathogens: An epidemiological framework to predict risk under uncertainty
    • Lo Iacono G, van den Bosch F, Gilligan C. 2013 Durable resistance to crop pathogens: an epidemiological framework to predict risk under uncertainty. PLoS Comput. Biol. 9, e1002870. (doi:10.1371/journal.pcbi.1002870)
    • (2013) PLoS Comput. Biol. , vol.9
    • Lo Iacono, G.1    Van Den Bosch, F.2    Gilligan, C.3
  • 24
    • 84856519071 scopus 로고    scopus 로고
    • Durable strategies to deploy plant resistance in agricultural landscapes
    • Fabre F, Rousseau E, Mailleret L, Moury B. 2012 Durable strategies to deploy plant resistance in agricultural landscapes. New Phytol. 193, 1064-1075. (doi:10.1111/j.1469-8137.2011.04019.x)
    • (2012) New Phytol , vol.193 , pp. 1064-1075
    • Fabre, F.1    Rousseau, E.2    Mailleret, L.3    Moury, B.4
  • 25
    • 84954394357 scopus 로고    scopus 로고
    • Epidemiological and evolutionary management of plant resistance: Optimizing the deployment of cultivar mixtures in time and space in agricultural landscapes
    • Fabre F, Rousseau E, Mailleret L, Moury B. 2015 Epidemiological and evolutionary management of plant resistance: optimizing the deployment of cultivar mixtures in time and space in agricultural landscapes. Evol. Appl. 8, 919-932. (doi:10.1111/ eva.12304)
    • (2015) Evol. Appl. , vol.8 , pp. 919-932
    • Fabre, F.1    Rousseau, E.2    Mailleret, L.3    Moury, B.4
  • 26
    • 77952682437 scopus 로고    scopus 로고
    • A point mutation in the polymerase of Potato virus Y confers virulence toward the Pvr4 resistance of pepper and a high competitiveness cost in susceptible cultivar
    • Janzac B, Montarry J, Palloix A, Navaud O, Moury B. 2010 A point mutation in the polymerase of Potato virus Y confers virulence toward the Pvr4 resistance of pepper and a high competitiveness cost in susceptible cultivar. Mol. Plant Microbe Interact. 23, 823-830. (doi:10.1094/MPMI-23-6-0823)
    • (2010) Mol. Plant Microbe Interact. , vol.23 , pp. 823-830
    • Janzac, B.1    Montarry, J.2    Palloix, A.3    Navaud, O.4    Moury, B.5
  • 27
    • 0036028757 scopus 로고    scopus 로고
    • Pathogen population genetics, evolutionary potential, and durable resistance
    • McDonald BA, Linde C. 2002 Pathogen population genetics, evolutionary potential, and durable resistance. Annu. Rev. Phytopathol. 40, 349-379. (doi:10.1146/annurev.phyto.40.120501.101443)
    • (2002) Annu. Rev. Phytopathol. , vol.40 , pp. 349-379
    • McDonald, B.A.1    Linde, C.2
  • 29
    • 85021187296 scopus 로고    scopus 로고
    • Transmission bottleneck size estimation from pathogen deep-sequencing data, with an application to human influenza A virus
    • Leonard AS, Weissman DB, Greenbaum B, Ghedin E, Koelle K. 2017 Transmission bottleneck size estimation from pathogen deep-sequencing data, with an application to human influenza A virus. J. Virol. 91, e00171-17. (doi:10.1128/JVI. 00171-17)
    • (2017) J. Virol. , vol.91 , pp. e00171-e00217
    • Leonard, A.S.1    Weissman, D.B.2    Greenbaum, B.3    Ghedin, E.4    Koelle, K.5
  • 30
    • 84979609816 scopus 로고    scopus 로고
    • More effective drugs lead to harder selective sweeps in the evolution of drug resistance in HIV-1
    • Feder AF, Rhee SY, Holmes SP, Shafer RW, Petrov DA, Pennings PS. 2016 More effective drugs lead to harder selective sweeps in the evolution of drug resistance in HIV-1. eLife 5, e10670. (doi:10.7554/ eLife.10670.001)
    • (2016) ELife , vol.5
    • Feder, A.F.1    Rhee, S.Y.2    Holmes, S.P.3    Shafer, R.W.4    Petrov, D.A.5    Pennings, P.S.6
  • 31
    • 31744444319 scopus 로고    scopus 로고
    • Epidemiology and disease-control under gene-for-gene plant-pathogen interaction
    • Ohtsuki A, Sasaki A. 2006 Epidemiology and disease-control under gene-for-gene plant-pathogen interaction. J. Theor. Biol. 238, 780-794. (doi:10.1016/j.jtbi.2005.06.030)
    • (2006) J. Theor. Biol. , vol.238 , pp. 780-794
    • Ohtsuki, A.1    Sasaki, A.2
  • 32
    • 18844439645 scopus 로고    scopus 로고
    • Soft sweeps: Molecular population genetics of adaptation from standing genetic variation
    • Hermisson J, Pennings PS. 2005 Soft sweeps: molecular population genetics of adaptation from standing genetic variation. Genetics 169, 2335-2352. (doi:10.1534/genetics.104.036947)
    • (2005) Genetics , vol.169 , pp. 2335-2352
    • Hermisson, J.1    Pennings, P.S.2
  • 33
    • 0033609141 scopus 로고    scopus 로고
    • Transmission bottlenecks as determinants of virulence in rapidly evolving pathogens
    • Bergstrom CT, McElhany P, Real LA. 1999 Transmission bottlenecks as determinants of virulence in rapidly evolving pathogens. Proc. Natl Acad. Sci. USA 96, 5095-5100. (doi:10.1073/pnas. 96.9.5095)
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 5095-5100
    • Bergstrom, C.T.1    McElhany, P.2    Real, L.A.3
  • 34
    • 40949146927 scopus 로고    scopus 로고
    • Sustainable agriculture and plant diseases: An epidemiological perspective
    • Gilligan CA. 2008 Sustainable agriculture and plant diseases: an epidemiological perspective. Phil. Trans. R. Soc. B 363, 741-759. (doi:10.1098/rstb. 2007.2181)
    • (2008) Phil. Trans. R. Soc. B , vol.363 , pp. 741-759
    • Gilligan, C.A.1
  • 35
    • 85026744797 scopus 로고    scopus 로고
    • Mosaics often outperform pyramids: Insights from a model comparing strategies for the deployment of plant resistance genes against viruses in agricultural landscapes
    • Djidjou-Demasse R, Moury B, Fabre F. 2017 Mosaics often outperform pyramids: insights from a model comparing strategies for the deployment of plant resistance genes against viruses in agricultural landscapes. New Phytol. 216, 239-253. (doi:10. 1111/nph.14701)
    • (2017) New Phytol , vol.216 , pp. 239-253
    • Djidjou-Demasse, R.1    Moury, B.2    Fabre, F.3
  • 36
    • 85046344821 scopus 로고    scopus 로고
    • Assessing the durability and efficiency of landscape-based strategies to deploy plant resistance to pathogens
    • Rimbaud L, Papaïx J, Rey JF, Barrett LG, Thrall PH. 2018 Assessing the durability and efficiency of landscape-based strategies to deploy plant resistance to pathogens. PLoS Comput. Biol. 14, e1006067. (doi:10.1371/journal.pcbi.1006067)
    • (2018) PLoS Comput. Biol. , vol.14
    • Rimbaud, L.1    Papaïx, J.2    Rey, J.F.3    Barrett, L.G.4    Thrall, P.H.5
  • 37
    • 84868208486 scopus 로고    scopus 로고
    • Virus adaptation to quantitative plant resistance: Erosion or breakdown?
    • Montarry J, Cartier E, Jacquemond M, Palloix A, Moury B. 2012 Virus adaptation to quantitative plant resistance: erosion or breakdown? J. Evol. Biol. 25, 2242-2252. (doi:10.1111/j.1420-9101.2012. 02600.x)
    • (2012) J. Evol. Biol. , vol.25 , pp. 2242-2252
    • Montarry, J.1    Cartier, E.2    Jacquemond, M.3    Palloix, A.4    Moury, B.5
  • 38
    • 85018199228 scopus 로고    scopus 로고
    • Bottlenecks in domestic animal populations can facilitate the emergence of Trypanosoma cruzi, the aetiological agent of Chagas disease
    • Levy MZ et al. 2015 Bottlenecks in domestic animal populations can facilitate the emergence of Trypanosoma cruzi, the aetiological agent of Chagas disease. Phil. Trans. R. Soc. B 282, 20142807. (doi:10.1098/rspb.2014.2807)
    • (2015) Phil. Trans. R. Soc. B , vol.282 , pp. 20142807
    • Levy, M.Z.1
  • 39
    • 75449117466 scopus 로고    scopus 로고
    • Estimation of the size of genetic bottlenecks in cell-to-cell movement of soil-borne wheat mosaic virus and the possible role of the bottlenecks in speeding up selection of variations in trans-acting genes of elements
    • Miyashita S, Kishino H. 2010 Estimation of the size of genetic bottlenecks in cell-to-cell movement of soil-borne wheat mosaic virus and the possible role of the bottlenecks in speeding up selection of variations in trans-acting genes of elements. J. Virol. 84, 1828-1837. (doi:10.1128/JVI.01890-09)
    • (2010) J. Virol. , vol.84 , pp. 1828-1837
    • Miyashita, S.1    Kishino, H.2
  • 40
    • 0035102156 scopus 로고    scopus 로고
    • Transition between stochastic evolution and deterministic evolution in the presence of selection: General theory and application in virology
    • Rouzine IM, Rodrigo A, Coffin JM. 2001 Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application in virology. Microbiol. Mol. Biol. Rev. 65, 151-185. (doi:10.1128/MMBR.65.1. 151-185.2001)
    • (2001) Microbiol. Mol. Biol. Rev. , vol.65 , pp. 151-185
    • Rouzine, I.M.1    Rodrigo, A.2    Coffin, J.M.3
  • 41
    • 2542583245 scopus 로고    scopus 로고
    • The fate of competing beneficial mutations in an asexual population
    • Gerrish PJ, Lenski RE. 1998 The fate of competing beneficial mutations in an asexual population. Genetica 102/103, 127-144.
    • (1998) Genetica , vol.102 , Issue.103 , pp. 127-144
    • Gerrish, P.J.1    Lenski, R.E.2


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