-
1
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
COI: 1:CAS:528:DC%2BD2sXjtlWntb8%3D
-
Barrangou, R. et al. CRISPR provides acquired resistance against viruses in prokaryotes. Science 315, 1709–1712 (2007).
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
-
2
-
-
57849137502
-
CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA
-
COI: 1:CAS:528:DC%2BD1cXhsFSmtrnE
-
Marraffini, L. A. & Sontheimer, E. J. CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA. Science 322, 1843–1845 (2008).
-
(2008)
Science
, vol.322
, pp. 1843-1845
-
-
Marraffini, L.A.1
Sontheimer, E.J.2
-
3
-
-
84866859751
-
Cas9–crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria
-
COI: 1:CAS:528:DC%2BC38XhsFCrsLfO
-
Gasiunas, G., Barrangou, R., Horvath, P. & Siksnys, V. Cas9–crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria. Proc. Natl Acad. Sci. USA 109, E2579–E2586 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. E2579-E2586
-
-
Gasiunas, G.1
Barrangou, R.2
Horvath, P.3
Siksnys, V.4
-
4
-
-
70449753811
-
RNA-guided RNA cleavage by a CRISPR RNA–Cas protein complex
-
COI: 1:CAS:528:DC%2BC3cXksFWksw%3D%3D
-
Hale, C. R. et al. RNA-guided RNA cleavage by a CRISPR RNA–Cas protein complex. Cell 139, 945–956 (2009).
-
(2009)
Cell
, vol.139
, pp. 945-956
-
-
Hale, C.R.1
-
5
-
-
84865070369
-
A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
-
COI: 1:CAS:528:DC%2BC38XhtFOqsb3L
-
Jinek, M. et al. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337, 816–821 (2012).
-
(2012)
Science
, vol.337
, pp. 816-821
-
-
Jinek, M.1
-
6
-
-
84861996069
-
CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3
-
COI: 1:CAS:528:DC%2BC38XlvFyisr4%3D
-
Westra, E. R. et al. CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3. Mol. Cell 46, 595–605 (2012).
-
(2012)
Mol. Cell
, vol.46
, pp. 595-605
-
-
Westra, E.R.1
-
7
-
-
85020445396
-
Diversity, classification and evolution of CRISPR–Cas systems
-
COI: 1:CAS:528:DC%2BC2sXptlSgsrc%3D
-
Koonin, E. V., Makarova, K. S. & Zhang, F. Diversity, classification and evolution of CRISPR–Cas systems. Curr. Opin. Microbiol. 37, 67–78 (2017).
-
(2017)
Curr. Opin. Microbiol.
, vol.37
, pp. 67-78
-
-
Koonin, E.V.1
Makarova, K.S.2
Zhang, F.3
-
8
-
-
85028711003
-
Type III CRISPR–Cas systems: when DNA cleavage just isn’t enough
-
COI: 1:CAS:528:DC%2BC2sXhtlylsLbI
-
Pyenson, N. C. & Marraffini, L. A. Type III CRISPR–Cas systems: when DNA cleavage just isn’t enough. Curr. Opin. Microbiol. 37, 150–154 (2017).
-
(2017)
Curr. Opin. Microbiol.
, vol.37
, pp. 150-154
-
-
Pyenson, N.C.1
Marraffini, L.A.2
-
9
-
-
84912066885
-
RNA targeting by the type III-A CRISPR–cas csm complex of Thermus thermophilus
-
COI: 1:CAS:528:DC%2BC2cXhvV2nu7vM
-
Staals, R. H. et al. RNA targeting by the type III-A CRISPR–cas csm complex of Thermus thermophilus. Mol. Cell 56, 518–530 (2014).
-
(2014)
Mol. Cell
, vol.56
, pp. 518-530
-
-
Staals, R.H.1
-
10
-
-
84912096635
-
Programmable RNA shredding by the Type III-A CRISPR–Cas system of Streptococcus thermophilus
-
COI: 1:CAS:528:DC%2BC2cXhvV2nu7rI
-
Tamulaitis, G. et al. Programmable RNA shredding by the Type III-A CRISPR–Cas system of Streptococcus thermophilus. Mol. Cell 56, 506–517 (2014).
-
(2014)
Mol. Cell
, vol.56
, pp. 506-517
-
-
Tamulaitis, G.1
-
11
-
-
84856778250
-
Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity
-
COI: 1:CAS:528:DC%2BC38XitFGhtrc%3D
-
Zhang, J. et al. Structure and mechanism of the CMR complex for CRISPR-mediated antiviral immunity. Mol. Cell 45, 303–313 (2012).
-
(2012)
Mol. Cell
, vol.45
, pp. 303-313
-
-
Zhang, J.1
-
12
-
-
84958965794
-
Bipartite recognition of target RNAs activates DNA cleavage by the Type III-B CRISPR–Cas system
-
COI: 1:CAS:528:DC%2BC28XhtVaku73E
-
Elmore, J. R. et al. Bipartite recognition of target RNAs activates DNA cleavage by the Type III-B CRISPR–Cas system. Genes Dev. 30, 447–459 (2016).
-
(2016)
Genes Dev.
, vol.30
, pp. 447-459
-
-
Elmore, J.R.1
-
13
-
-
84958974597
-
RNA-activated DNA cleavage by the Type III-B CRISPR–Cas effector complex
-
COI: 1:CAS:528:DC%2BC28XhtVaku7vM
-
Estrella, M. A., Kuo, F. T. & Bailey, S. RNA-activated DNA cleavage by the Type III-B CRISPR–Cas effector complex. Genes Dev. 30, 460–470 (2016).
-
(2016)
Genes Dev.
, vol.30
, pp. 460-470
-
-
Estrella, M.A.1
Kuo, F.T.2
Bailey, S.3
-
14
-
-
84963900721
-
Spatiotemporal control of type III-A CRISPR–Cas immunity: coupling DNA degradation with the target RNA recognition
-
COI: 1:CAS:528:DC%2BC28XmslShurk%3D
-
Kazlauskiene, M., Tamulaitis, G., Kostiuk, G., Venclovas, C. & Siksnys, V. Spatiotemporal control of type III-A CRISPR–Cas immunity: coupling DNA degradation with the target RNA recognition. Mol. Cell 62, 295–306 (2016).
-
(2016)
Mol. Cell
, vol.62
, pp. 295-306
-
-
Kazlauskiene, M.1
Tamulaitis, G.2
Kostiuk, G.3
Venclovas, C.4
Siksnys, V.5
-
15
-
-
84930085853
-
Co-transcriptional DNA and RNA cleavage during type III CRISPR–Cas immunity
-
COI: 1:CAS:528:DC%2BC2MXotVKnu7g%3D
-
Samai, P. et al. Co-transcriptional DNA and RNA cleavage during type III CRISPR–Cas immunity. Cell 161, 1164–1174 (2015).
-
(2015)
Cell
, vol.161
, pp. 1164-1174
-
-
Samai, P.1
-
16
-
-
84944449180
-
An updated evolutionary classification of CRISPR–Cas systems
-
COI: 1:CAS:528:DC%2BC2MXhsFKnsLfO
-
Makarova, K. S. et al. An updated evolutionary classification of CRISPR–Cas systems. Nat. Rev. Microbiol. 13, 722–736 (2015).
-
(2015)
Nat. Rev. Microbiol.
, vol.13
, pp. 722-736
-
-
Makarova, K.S.1
-
17
-
-
84958690222
-
Structural basis for the endoribonuclease activity of the type III-A CRISPR-associated protein Csm6
-
COI: 1:CAS:528:DC%2BC28XhtV2lsrrP
-
Niewoehner, O. & Jinek, M. Structural basis for the endoribonuclease activity of the type III-A CRISPR-associated protein Csm6. RNA 22, 318–329 (2016).
-
(2016)
RNA
, vol.22
, pp. 318-329
-
-
Niewoehner, O.1
Jinek, M.2
-
18
-
-
84966273607
-
Comparative genomic analyses reveal a vast, novel network of nucleotide-centric systems in biological conflicts, immunity and signaling
-
COI: 1:CAS:528:DC%2BC28XhtVCqsLvE
-
Burroughs, A. M., Zhang, D., Schaffer, D. E., Iyer, L. M. & Aravind, L. Comparative genomic analyses reveal a vast, novel network of nucleotide-centric systems in biological conflicts, immunity and signaling. Nucleic Acids Res. 43, 10633–10654 (2015).
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. 10633-10654
-
-
Burroughs, A.M.1
Zhang, D.2
Schaffer, D.E.3
Iyer, L.M.4
Aravind, L.5
-
19
-
-
85021810724
-
A cyclic oligonucleotide signaling pathway in type III CRISPR–Cas systems
-
COI: 1:CAS:528:DC%2BC2sXhtlehur%2FF
-
Kazlauskiene, M., Kostiuk, G., Venclovas, C., Tamulaitis, G. & Siksnys, V. A cyclic oligonucleotide signaling pathway in type III CRISPR–Cas systems. Science 357, 605–609 (2017).
-
(2017)
Science
, vol.357
, pp. 605-609
-
-
Kazlauskiene, M.1
Kostiuk, G.2
Venclovas, C.3
Tamulaitis, G.4
Siksnys, V.5
-
20
-
-
85028735202
-
Type III CRISPR–Cas systems produce cyclic oligoadenylate second messengers
-
COI: 1:CAS:528:DC%2BC2sXhsVektrvK
-
Niewoehner, O. et al. Type III CRISPR–Cas systems produce cyclic oligoadenylate second messengers. Nature 548, 543–548 (2017).
-
(2017)
Nature
, vol.548
, pp. 543-548
-
-
Niewoehner, O.1
-
21
-
-
85052222007
-
Control of cyclic oligoadenylate synthesis in a type III CRISPR system
-
Rouillon, C., Athukoralage, J. S., Graham, S., Gruschow, S. & White, M. F. Control of cyclic oligoadenylate synthesis in a type III CRISPR system. eLife 7, e36734 (2018).
-
(2018)
eLife
, vol.7
-
-
Rouillon, C.1
Athukoralage, J.S.2
Graham, S.3
Gruschow, S.4
White, M.F.5
-
22
-
-
85054605583
-
Ring nucleases deactivate type III CRISPR ribonucleases by degrading cyclic oligoadenylate
-
Athukoralage, J. S., Rouillon, C., Graham, S., Gruschow, S. & White, M. F. Ring nucleases deactivate type III CRISPR ribonucleases by degrading cyclic oligoadenylate. Nature 562, 277–280 (2018).
-
(2018)
Nature
, vol.562
, pp. 277-280
-
-
Athukoralage, J.S.1
Rouillon, C.2
Graham, S.3
Gruschow, S.4
White, M.F.5
-
23
-
-
84958125062
-
Degradation of phage transcripts by CRISPR-associated RNases enables type III CRISPR–Cas immunity
-
COI: 1:CAS:528:DC%2BC28XitFCktrY%3D
-
Jiang, W., Samai, P. & Marraffini, L. A. Degradation of phage transcripts by CRISPR-associated RNases enables type III CRISPR–Cas immunity. Cell 164, 710–721 (2016).
-
(2016)
Cell
, vol.164
, pp. 710-721
-
-
Jiang, W.1
Samai, P.2
Marraffini, L.A.3
-
24
-
-
85052151253
-
The ribonuclease activity of Csm6 is required for anti-plasmid immunity by Type III-A CRISPR–Cas systems
-
Foster, K., Kalter, J., Woodside, W., Terns, R. M. & Terns, M. P. The ribonuclease activity of Csm6 is required for anti-plasmid immunity by Type III-A CRISPR–Cas systems. RNA Biol. 10.1080/15476286.2018.1493334(2018).
-
(2018)
RNA Biol
-
-
Foster, K.1
Kalter, J.2
Woodside, W.3
Terns, R.M.4
Terns, M.P.5
-
25
-
-
84890935599
-
Genetic characterization of antiplasmid immunity through a type III-A CRISPR–CAS system
-
Hatoum-Aslan, A., Maniv, I., Samai, P. & Marraffini, L. A. Genetic characterization of antiplasmid immunity through a type III-A CRISPR–CAS system. J. Bacteriol. 196, 310–317 (2014).
-
(2014)
J. Bacteriol.
, vol.196
, pp. 310-317
-
-
Hatoum-Aslan, A.1
Maniv, I.2
Samai, P.3
Marraffini, L.A.4
-
26
-
-
77954058183
-
Presence of a classical RRM-fold palm domain in Thg1-type 3′–5′nucleic acid polymerases and the origin of the GGDEF and CRISPR polymerase domains
-
Anantharaman, V., Iyer, L. M. & Aravind, L. Presence of a classical RRM-fold palm domain in Thg1-type 3′–5′nucleic acid polymerases and the origin of the GGDEF and CRISPR polymerase domains. Biol. Direct. 5, 43 (2010).
-
(2010)
Biol. Direct.
, vol.5
-
-
Anantharaman, V.1
Iyer, L.M.2
Aravind, L.3
-
27
-
-
75749118174
-
Self versus non-self discrimination during CRISPR RNA-directed immunity
-
COI: 1:CAS:528:DC%2BC3cXltlCntQ%3D%3D
-
Marraffini, L. A. & Sontheimer, E. J. Self versus non-self discrimination during CRISPR RNA-directed immunity. Nature 463, 568–571 (2010).
-
(2010)
Nature
, vol.463
, pp. 568-571
-
-
Marraffini, L.A.1
Sontheimer, E.J.2
-
28
-
-
84874195392
-
A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus
-
COI: 1:CAS:528:DC%2BC3sXivFOksL4%3D
-
Deng, L., Garrett, R. A., Shah, S. A., Peng, X. & She, Q. A novel interference mechanism by a type IIIB CRISPR-Cmr module in Sulfolobus. Mol. Microbiol. 87, 1088–1099 (2013).
-
(2013)
Mol. Microbiol.
, vol.87
, pp. 1088-1099
-
-
Deng, L.1
Garrett, R.A.2
Shah, S.A.3
Peng, X.4
She, Q.5
-
29
-
-
84908456823
-
Conditional tolerance of temperate phages via transcription-dependent CRISPR–Cas targeting
-
COI: 1:CAS:528:DC%2BC2cXhvVCnu7vI
-
Goldberg, G. W., Jiang, W., Bikard, D. & Marraffini, L. A. Conditional tolerance of temperate phages via transcription-dependent CRISPR–Cas targeting. Nature 514, 633–637 (2014).
-
(2014)
Nature
, vol.514
, pp. 633-637
-
-
Goldberg, G.W.1
Jiang, W.2
Bikard, D.3
Marraffini, L.A.4
-
30
-
-
0020610320
-
The toxic shock syndrome exotoxin structural gene is not detectably transmitted by a prophage
-
COI: 1:CAS:528:DyaL3sXlvVyrsLY%3D
-
Kreiswirth, B. N. et al. The toxic shock syndrome exotoxin structural gene is not detectably transmitted by a prophage. Nature 305, 709–712 (1983).
-
(1983)
Nature
, vol.305
, pp. 709-712
-
-
Kreiswirth, B.N.1
-
31
-
-
82555181642
-
Vectors for improved Tet repressor-dependent gradual gene induction or silencing in Staphylococcus aureus
-
COI: 1:CAS:528:DC%2BC3MXhs1GqtLvF
-
Helle, L. et al. Vectors for improved Tet repressor-dependent gradual gene induction or silencing in Staphylococcus aureus. Microbiology 157, 3314–3323 (2011).
-
(2011)
Microbiology
, vol.157
, pp. 3314-3323
-
-
Helle, L.1
-
32
-
-
85010341397
-
RNA and DNA targeting by a reconstituted Thermus thermophilus Type III-A CRISPR–Cas system
-
Liu, T. Y., Iavarone, A. T. & Doudna, J. A. RNA and DNA targeting by a reconstituted Thermus thermophilus Type III-A CRISPR–Cas system. PLoS ONE 12, e0170552 (2017).
-
(2017)
PLoS ONE
, vol.12
-
-
Liu, T.Y.1
Iavarone, A.T.2
Doudna, J.A.3
-
33
-
-
84940111503
-
Plasmid rolling-circle replication
-
Ruiz-Maso, J. A. et al. Plasmid rolling-circle replication. Microbiol Spectr. 3, PLAS-0035-2014 (2015).
-
(2015)
Microbiol Spectr.
, vol.3
-
-
Ruiz-Maso, J.A.1
-
34
-
-
84956762041
-
The CRISPR-associated Csx1 protein of Pyrococcus furiosus is an adenosine-specific endoribonuclease
-
COI: 1:CAS:528:DC%2BC28XpsFyhtLk%3D
-
Sheppard, N. F., Glover, C. V. 3rd, Terns, R. M. & Terns, M. P. The CRISPR-associated Csx1 protein of Pyrococcus furiosus is an adenosine-specific endoribonuclease. RNA 22, 216–224 (2016).
-
(2016)
RNA
, vol.22
, pp. 216-224
-
-
Sheppard, N.F.1
Glover, C.V.2
Terns, R.M.3
Terns, M.P.4
-
35
-
-
84878893667
-
Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing
-
COI: 1:CAS:528:DC%2BC3sXht1WjsLvF
-
Anantharaman, V., Makarova, K. S., Burroughs, A. M., Koonin, E. V. & Aravind, L. Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing. Biol. Direct. 8, 15 (2013).
-
(2013)
Biol. Direct.
, vol.8
-
-
Anantharaman, V.1
Makarova, K.S.2
Burroughs, A.M.3
Koonin, E.V.4
Aravind, L.5
-
36
-
-
84899132580
-
Staying alive: cell death in antiviral immunity
-
COI: 1:CAS:528:DC%2BC2cXntFGntbY%3D
-
Upton, J. W. & Chan, F. K. Staying alive: cell death in antiviral immunity. Mol. Cell 54, 273–280 (2014).
-
(2014)
Mol. Cell
, vol.54
, pp. 273-280
-
-
Upton, J.W.1
Chan, F.K.2
-
37
-
-
77951104433
-
Bacteriophage resistance mechanisms
-
COI: 1:CAS:528:DC%2BC3cXjvFarsrY%3D
-
Labrie, S. J., Samson, J. E. & Moineau, S. Bacteriophage resistance mechanisms. Nat. Rev. Microbiol. 8, 317–327 (2010).
-
(2010)
Nat. Rev. Microbiol.
, vol.8
, pp. 317-327
-
-
Labrie, S.J.1
Samson, J.E.2
Moineau, S.3
-
38
-
-
0020315189
-
Nucleotide sequence and functional map of pE194, a plasmid that specifies inducible resistance to macrolide, lincosamide, and streptogramin type B antibodies
-
COI: 1:CAS:528:DyaL38XktFyhsL0%3D, PID: 6279574
-
Horinouchi, S. & Weisblum, B. Nucleotide sequence and functional map of pE194, a plasmid that specifies inducible resistance to macrolide, lincosamide, and streptogramin type B antibodies. J. Bacteriol. 150, 804–814 (1982).
-
(1982)
J. Bacteriol.
, vol.150
, pp. 804-814
-
-
Horinouchi, S.1
Weisblum, B.2
-
39
-
-
0020266466
-
Nucleotide sequence and functional map of pC194, a plasmid that specifies inducible chloramphenicol resistance
-
COI: 1:CAS:528:DyaL38XktFyhsLo%3D, PID: 6950931
-
Horinouchi, S. & Weisblum, B. Nucleotide sequence and functional map of pC194, a plasmid that specifies inducible chloramphenicol resistance. J. Bacteriol. 150, 815–825 (1982).
-
(1982)
J. Bacteriol.
, vol.150
, pp. 815-825
-
-
Horinouchi, S.1
Weisblum, B.2
-
40
-
-
84871809302
-
STAR: ultrafast universal RNA-seq aligner
-
COI: 1:CAS:528:DC%2BC38XhvV2gsbnF
-
Dobin, A. et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29, 15–21 (2013).
-
(2013)
Bioinformatics
, vol.29
, pp. 15-21
-
-
Dobin, A.1
-
41
-
-
84960924821
-
Transfer of the methicillin resistance genomic island among staphylococci by conjugation
-
COI: 1:CAS:528:DC%2BC28XktV2nsL4%3D
-
Ray, M. D., Boundy, S. & Archer, G. L. Transfer of the methicillin resistance genomic island among staphylococci by conjugation. Mol. Microbiol. 100, 675–685 (2016).
-
(2016)
Mol. Microbiol.
, vol.100
, pp. 675-685
-
-
Ray, M.D.1
Boundy, S.2
Archer, G.L.3
-
42
-
-
85009115800
-
Horizontally acquired AT-rich genes in Escherichia coli cause toxicity by sequestering RNA polymerase
-
COI: 1:CAS:528:DC%2BC2sXkvFyqs7Y%3D
-
Lamberte, L. E. et al. Horizontally acquired AT-rich genes in Escherichia coli cause toxicity by sequestering RNA polymerase. Nat. Microbiol. 2, 16249 (2017).
-
(2017)
Nat. Microbiol.
, vol.2
, pp. 16249
-
-
Lamberte, L.E.1
-
43
-
-
84897397058
-
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
-
COI: 1:CAS:528:DC%2BC2cXltFGqu7c%3D
-
Liao, Y., Smyth, G. K. & Shi, W. featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics 30, 923–930 (2014).
-
(2014)
Bioinformatics
, vol.30
, pp. 923-930
-
-
Liao, Y.1
Smyth, G.K.2
Shi, W.3
|