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PANTHER: A library of protein families and subfamilies indexed by function
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PANTHER: A browsable database of gene products organized by biological function, using curated protein family and subfamily classification
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Thomas, P.D., Kejariwal, A., Campbell, M.J., Mi, H., Diemer, K., Guo, N., Ladunga, I., Ulitsky-Lazareva, B., Muruganujan, A., Rabkin, S. et al. (2003) PANTHER: A browsable database of gene products organized by biological function, using curated protein family and subfamily classification. Nucleic Acids Res., 31, 334-341.
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GIGA: A simple, efficient algorithm for gene tree inference in the genomic age
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PANTHER in 2013: Modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees
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Mi, H., Muruganujan, A. and Thomas, P.D. (2013) PANTHER in 2013: Modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees. Nucleic Acids Res., 41, D377-D386.
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PANTHER version 10: Expanded protein families and functions, and analysis tools
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Mi, H., Poudel, S., Muruganujan, A., Casagrande, J.T. and Thomas, P.D. (2016) PANTHER version 10: expanded protein families and functions, and analysis tools. Nucleic Acids Res., 44, D336-D342.
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Applications for protein sequence-function evolution data: MRNA/protein expression analysis and coding SNP scoring tools
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Thomas, P.D., Kejariwal, A., Guo, N., Mi, H., Campbell, M.J., Muruganujan, A. and Lazareva-Ulitsky, B. (2006) Applications for protein sequence-function evolution data: MRNA/protein expression analysis and coding SNP scoring tools. Nucleic Acids Res., 34, W645-W650.
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Large-scale gene function analysis with the PANTHER classification system
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Mi, H., Muruganujan, A., Casagrande, J.T. and Thomas, P.D. (2013) Large-scale gene function analysis with the PANTHER classification system. Nat. Protoc., 8, 1551-1566.
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PANTHER pathway: An ontology-based pathway database coupled with data analysis tools
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Sonnhammer, E.L., Gabaldón, T., Sousa da Silva, A.W., Martin, M., Robinson-Rechavi, M., Boeckmann, B., Thomas, P.D., Dessimoz, C. and Quest for Orthologs consortium (2014) Big data and other challenges in the quest for orthologs. Bioinformatics, 30, 2993-2998.
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The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database
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Rawlings, N.D., Barrett, A.J., Thomas, P.D., Huang, X., Bateman, A. and Finn, R.D. (2018) The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database. Nucleic Acids Res., 46, D624-D632.
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