메뉴 건너뛰기




Volumn 20, Issue 10, 2018, Pages

Utilization of electronic medical records and biomedical literature to support the diagnosis of rare diseases using data fusion and collaborative filtering approaches

Author keywords

Electronic medical record; Literature; Rare diseases; Text mining

Indexed keywords


EID: 85055264035     PISSN: None     EISSN: 22919694     Source Type: Journal    
DOI: 10.2196/11301     Document Type: Article
Times cited : (26)

References (37)
  • 1
    • 85055277918 scopus 로고    scopus 로고
    • accessed 09-24 WebCite Cache ID_72fvJHyob
    • Orphadata. Orphanet Rare Disease Ontology URL: http://www.orphadata.org/cgi-bin/inc/ordo_orphanet.inc.php [accessed 2018-09-24] [WebCite Cache ID_72fvJHyob]
    • (2018) Orphanet Rare Disease Ontology
  • 2
    • 84896346214 scopus 로고    scopus 로고
    • WebCite Cache ID_72fvQ7paf
    • Rare disease day. URL: http://rarediseaseday.us/[WebCite Cache ID_72fvQ7paf]
    • Rare Disease Day
  • 3
    • 77953936166 scopus 로고    scopus 로고
    • The human phenotype ontology
    • Jun Medline: 20412080
    • Robinson PN, Mundlos S. The human phenotype ontology. Clin Genet 2010 Jun;77(6):525-534. [doi: 10.1111/j.1399-0004.2010.01436.x] [Medline: 20412080]
    • (2010) Clin Genet , vol.77 , Issue.6 , pp. 525-534
    • Robinson, P.N.1    Mundlos, S.2
  • 4
    • 85040529028 scopus 로고    scopus 로고
    • Phenotypic analysis of clinical narratives using human phenotype ontology
    • Medline: 29295162
    • Shen F, Wang L, Liu H. Phenotypic analysis of clinical narratives using human phenotype ontology. Stud Health Technol Inform 2017;245:581-585. [Medline: 29295162]
    • (2017) Stud Health Technol Inform , vol.245 , pp. 581-585
    • Shen, F.1    Wang, L.2    Liu, H.3
  • 5
    • 85055256180 scopus 로고    scopus 로고
    • Leveraging collaborative filtering to accelerate rare disease diagnosis
    • FREE Full _text Medline: 29854225
    • Shen F, Liu S, Wang Y, Wang L, Afzal N, Liu H. Leveraging collaborative filtering to accelerate rare disease diagnosis. AMIA Annu Symp Proc 2017;2017:1554-1563 [FREE Full _text] [Medline: 29854225]
    • (2017) AMIA Annu Symp Proc , vol.2017 , pp. 1554-1563
    • Shen, F.1    Liu, S.2    Wang, Y.3    Wang, L.4    Afzal, N.5    Liu, H.6
  • 6
    • 0031103679 scopus 로고    scopus 로고
    • Fab: Content-based, collaborative recommendation
    • Mar
    • Balabanovic M, Shoham Y. Fab: content-based, collaborative recommendation. Commun ACM 1997 Mar;40(3):66-72.
    • (1997) Commun ACM , vol.40 , Issue.3 , pp. 66-72
    • Balabanovic, M.1    Shoham, Y.2
  • 7
    • 0037252945 scopus 로고    scopus 로고
    • Amazon.com recommendations: Item-to-item collaborative filtering
    • Linden G, Smith B, York J. Amazon.com recommendations: item-to-item collaborative filtering. IEEE Internet Comput 2003:76-80. [doi: 10.1109/MIC.2003.1167344]
    • (2003) IEEE Internet Comput , pp. 76-80
    • Linden, G.1    Smith, B.2    York, J.3
  • 8
    • 77952180804 scopus 로고    scopus 로고
    • User-based collaborative-filtering recommendation algorithms on hadoop
    • 2010 Third International Conference on Knowledge Discovery and Data Mining. 2010 January 9-10, Phuket
    • Zhao Z, Shang M. User-based collaborative-filtering recommendation algorithms on hadoop. In: 2010 Third International Conference on Knowledge Discovery and Data Mining. 2010 Presented at: IEEE International Conference on Knowledge Discovery and Data Mining; January 9-10, 2010; Phuket.
    • (2010) IEEE International Conference on Knowledge Discovery and Data Mining
    • Zhao, Z.1    Shang, M.2
  • 9
    • 0242666971 scopus 로고    scopus 로고
    • Data preparation for data mining
    • Zhang S, Zhang C, Yang Q. Data preparation for data mining. Appl Artif Intell 2003;17(5-6):375-381. [doi: 10.1080/713827180]
    • (2003) Appl Artif Intell , vol.17 , Issue.5-6 , pp. 375-381
    • Zhang, S.1    Zhang, C.2    Yang, Q.3
  • 11
    • 84962388411 scopus 로고    scopus 로고
    • BmQGen: Biomedical query generator for knowledge discovery
    • 2015 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM); November 9, Washington, DC
    • Shen F, Liu H, Sohn S, Larson DW, Lee Y. BmQGen: Biomedical query generator for knowledge discovery. In: 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). 2015 Presented at: 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM); November 9, 2015; Washington, DC p. 1092-1097 URL: https://queue.acm.org/detail.cfm?id=1103836 [doi: 10.1109/BIBM.2015.7359833]
    • (2015) 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) , pp. 1092-1097
    • Shen, F.1    Liu, H.2    Sohn, S.3    Larson, D.W.4    Lee, Y.5
  • 12
    • 0035568759 scopus 로고    scopus 로고
    • Heterogeneous database integration in biomedicine
    • Aug FREE Full _text Medline: 11977810
    • Sujansky W. Heterogeneous database integration in biomedicine. J Biomed Inform 2001 Aug;34(4):285-298 [FREE Full text] [Medline: 11977810]
    • (2001) J Biomed Inform , vol.34 , Issue.4 , pp. 285-298
    • Sujansky, W.1
  • 13
    • 84984893082 scopus 로고    scopus 로고
    • Knowledge discovery from biomedical ontologies in cross domains
    • Sep FREE Full _text Medline: 27548262
    • Shen F, Lee Y. Knowledge Discovery from Biomedical Ontologies in Cross Domains. PLoS One 2016 Sep;11(8):e0160005-e0160206 [FREE Full _text] [doi: 10.1371/journal.pone.0160005] [Medline: 27548262]
    • (2016) PLoS One , vol.11 , Issue.8
    • Shen, F.1    Lee, Y.2
  • 14
    • 84890457821 scopus 로고    scopus 로고
    • An adaptable architecture for patient cohort identification from diverse data sources
    • Dec FREE Full _text Medline: 24064442
    • Bache R, Miles S, Taweel A. An adaptable architecture for patient cohort identification from diverse data sources. J Am Med Inform Assoc 2013 Dec;20(e2):e327-e333 [FREE Full _text] [doi: 10.1136/amiajnl-2013-001858] [Medline: 24064442]
    • (2013) J Am Med Inform Assoc , vol.20 , Issue.e2 , pp. e327-e333
    • Bache, R.1    Miles, S.2    Taweel, A.3
  • 15
    • 0026915774 scopus 로고
    • Designing a hospital information system: A comparison of interfaced and integrated systems
    • Medline: 1522791
    • Bleich H, Slack W. Designing a hospital information system: a comparison of interfaced and integrated systems. MD Comput 1992;9(5):293-296. [Medline: 1522791]
    • (1992) MD Comput , vol.9 , Issue.5 , pp. 293-296
    • Bleich, H.1    Slack, W.2
  • 16
    • 0343851747 scopus 로고    scopus 로고
    • Transferring data from one EPR to another: Content-syntax-semantic
    • Dec Medline: 10805022
    • Bürkle T, Schweiger R, Altmann U, Holena M, Blobel B, Dudeck J. Transferring data from one EPR to another: content-syntax-semantic. Methods Inf Med 1999 Dec;38(4-5):321-325. [Medline: 10805022]
    • (1999) Methods Inf Med , vol.38 , Issue.4-5 , pp. 321-325
    • Bürkle, T.1    Schweiger, R.2    Altmann, U.3    Holena, M.4    Blobel, B.5    Dudeck, J.6
  • 18
    • 84920997033 scopus 로고    scopus 로고
    • Ontology-based data integration between clinical and research systems
    • FREE Full _text Medline: 25588043
    • Mate S, Köpcke F, Toddenroth D, Martin M, Prokosch H, Bürkle T, et al. Ontology-based data integration between clinical and research systems. PLoS One 2015;10(1):e0116656 [FREE Full _text] [doi: 10.1371/journal.pone.0116656] [Medline: 25588043]
    • (2015) PLoS One , vol.10 , Issue.1
    • Mate, S.1    Köpcke, F.2    Toddenroth, D.3    Martin, M.4    Prokosch, H.5    Bürkle, T.6
  • 19
    • 84874675307 scopus 로고    scopus 로고
    • SHRINE: Enabling nationally scalable multi-site disease studies
    • FREE Full _text Medline: 23533569
    • McMurry AJ, Murphy SN, MacFadden D, Weber G, Simons WW, Orechia J, et al. SHRINE: enabling nationally scalable multi-site disease studies. PLoS One 2013;8(3):e55811 [FREE Full _text] [doi: 10.1371/journal.pone.0055811] [Medline: 23533569]
    • (2013) PLoS One , vol.8 , Issue.3
    • McMurry, A.J.1    Murphy, S.N.2    MacFadden, D.3    Weber, G.4    Simons, W.W.5    Orechia, J.6
  • 20
    • 59349088323 scopus 로고    scopus 로고
    • Future developments of medical informatics from the viewpoint of networked clinical research. Interoperability and integration
    • Medline: 19151883
    • Ohmann C, Kuchinke W. Future developments of medical informatics from the viewpoint of networked clinical research. Interoperability and integration. Methods Inf Med 2009;48(1):45-54. [Medline: 19151883]
    • (2009) Methods Inf Med , vol.48 , Issue.1 , pp. 45-54
    • Ohmann, C.1    Kuchinke, W.2
  • 21
    • 33750975917 scopus 로고    scopus 로고
    • Support vector Machine learning from heterogeneous data: An empirical analysis using protein sequence and structure
    • Nov 15 Medline: 16966363
    • Lewis DP, Jebara T, Noble WS. Support vector Machine learning from heterogeneous data: an empirical analysis using protein sequence and structure. Bioinformatics 2006 Nov 15;22(22):2753-2760. [doi: 10.1093/bioinformatics/btl475] [Medline: 16966363]
    • (2006) Bioinformatics , vol.22 , Issue.22 , pp. 2753-2760
    • Lewis, D.P.1    Jebara, T.2    Noble, W.S.3
  • 22
    • 77954853785 scopus 로고    scopus 로고
    • L2-norm multiple kernel learning and its application to biomedical data fusion
    • Jun 08 FREE Full _text Medline: 20529363
    • Yu S, Falck T, Daemen A, Tranchevent L, Suykens JA, De Moor B, et al. L2-norm multiple kernel learning and its application to biomedical data fusion. BMC Bioinformatics 2010 Jun 08;11:309 [FREE Full _text] [doi: 10.1186/1471-2105-11-309] [Medline: 20529363]
    • (2010) BMC Bioinformatics , vol.11 , pp. 309
    • Yu, S.1    Falck, T.2    Daemen, A.3    Tranchevent, L.4    Suykens, J.A.5    De Moor, B.6
  • 24
    • 85054036088 scopus 로고    scopus 로고
    • A comparison of word embeddings for the biomedical natural language processing
    • Sep 11 Medline: 30217670
    • Wang Y, Liu S, Afzal N, Rastegar-Mojarad M, Wang L, Shen F, et al. A comparison of word embeddings for the biomedical natural language processing. J Biomed Inform 2018 Sep 11. [doi: 10.1016/j.jbi.2018.09.008] [Medline: 30217670]
    • (2018) J Biomed Inform
    • Wang, Y.1    Liu, S.2    Afzal, N.3    Rastegar-Mojarad, M.4    Wang, L.5    Shen, F.6
  • 25
    • 80053268343 scopus 로고    scopus 로고
    • Using Machine learning for concept extraction on clinical documents from multiple data sources
    • FREE Full _text Medline: 21709161
    • Torii M, Wagholikar K, Liu H. Using Machine learning for concept extraction on clinical documents from multiple data sources. J Am Med Inform Assoc 2011;18(5):580-587 [FREE Full _text] [doi: 10.1136/amiajnl-2011-000155] [Medline: 21709161]
    • (2011) J Am Med Inform Assoc , vol.18 , Issue.5 , pp. 580-587
    • Torii, M.1    Wagholikar, K.2    Liu, H.3
  • 26
    • 84879298648 scopus 로고    scopus 로고
    • Combining heterogeneous data sources for accurate functional annotation of proteins
    • FREE Full _text Medline: 23514123
    • Sokolov A, Funk C, Graim K, Verspoor K, Ben-Hur A. Combining heterogeneous data sources for accurate functional annotation of proteins. BMC Bioinformatics 2013;14 Suppl 3:S10 [FREE Full _text] [doi: 10.1186/1471-2105-14-S3-S10] [Medline: 23514123]
    • (2013) BMC Bioinformatics , vol.14 , pp. S10
    • Sokolov, A.1    Funk, C.2    Graim, K.3    Verspoor, K.4    Ben-Hur, A.5
  • 29
    • 84870453566 scopus 로고    scopus 로고
    • SemMedDB: A PubMed-scale repository of biomedical semantic predications
    • Dec 01 FREE Full _text Medline: 23044550
    • Kilicoglu H, Shin D, Fiszman M, Rosemblat G, Rindflesch T. SemMedDB: a PubMed-scale repository of biomedical semantic predications. Bioinformatics 2012 Dec 01;28(23):3158-3160 [FREE Full _text] [doi: 10.1093/bioinformatics/bts591] [Medline: 23044550]
    • (2012) Bioinformatics , vol.28 , Issue.23 , pp. 3158-3160
    • Kilicoglu, H.1    Shin, D.2    Fiszman, M.3    Rosemblat, G.4    Rindflesch, T.5
  • 32
    • 83655197851 scopus 로고    scopus 로고
    • Constructing a semantic predication gold standard from the biomedical literature
    • Dec 20 FREE Full _text Medline: 22185221
    • Kilicoglu H, Rosemblat G, Fiszman M, Rindflesch TC. Constructing a semantic predication gold standard from the biomedical literature. BMC Bioinformatics 2011 Dec 20;12:486 [FREE Full _text] [doi: 10.1186/1471-2105-12-486] [Medline: 22185221]
    • (2011) BMC Bioinformatics , vol.12 , pp. 486
    • Kilicoglu, H.1    Rosemblat, G.2    Fiszman, M.3    Rindflesch, T.C.4
  • 33
    • 80052095985 scopus 로고    scopus 로고
    • Semantic MEDLINE: An advanced information management application for biomedicine
    • FREE Full _text
    • Rindflesch T, Kilicoglu H, Fiszman M, Rosemblat G, Shin D. Semantic MEDLINE: an advanced information management application for biomedicine. Inf Serv Use 2011;31(1-2):15-21 [FREE Full _text]
    • (2011) Inf Serv Use , vol.31 , Issue.1-2 , pp. 15-21
    • Rindflesch, T.1    Kilicoglu, H.2    Fiszman, M.3    Rosemblat, G.4    Shin, D.5
  • 34
    • 0842283365 scopus 로고    scopus 로고
    • The interaction of domain knowledge and linguistic structure in natural language processing: Interpreting hypernymic propositions in biomedical text
    • Dec FREE Full _text Medline: 14759819
    • Rindflesch TC, Fiszman M. The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text. J Biomed Inform 2003 Dec;36(6):462-477 [FREE Full _text] [doi: 10.1016/j.jbi.2003.11.003] [Medline: 14759819]
    • (2003) J Biomed Inform , vol.36 , Issue.6 , pp. 462-477
    • Rindflesch, T.C.1    Fiszman, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.