-
1
-
-
40149099357
-
Bacterial infections, sepsis, and multiorgan failure in cirrhosis
-
Tandon P, Garcia-Tsao G. Bacterial infections, sepsis, and multiorgan failure in cirrhosis. Semin Liver Dis 2008;28:26-42
-
(2008)
Semin Liver Dis
, vol.28
, pp. 26-42
-
-
Tandon, P.1
Garcia-Tsao, G.2
-
2
-
-
84957990262
-
Antibiotics and the human gut microbiome: dysbioses and accumulation of resistances
-
Francino MP. Antibiotics and the human gut microbiome: dysbioses and accumulation of resistances. Front Microbiol 2015;6:1543
-
(2015)
Front Microbiol
, vol.6
, pp. 1543
-
-
Francino, M.P.1
-
3
-
-
73149110852
-
Severe sepsis in cirrhosis
-
Gustot T, Durand F, Lebrec D, Vincent JL, Moreau R. Severe sepsis in cirrhosis. Hepatology 2009;50:2022-2033
-
(2009)
Hepatology
, vol.50
, pp. 2022-2033
-
-
Gustot, T.1
Durand, F.2
Lebrec, D.3
Vincent, J.L.4
Moreau, R.5
-
4
-
-
84898830272
-
Altered profile of human gut microbiome is associated with cirrhosis and its complications
-
Bajaj JS, Heuman DM, Hylemon PB, Sanyal AJ, White MB, Monteith P, et al. Altered profile of human gut microbiome is associated with cirrhosis and its complications. J Hepatol 2014;60:940-947
-
(2014)
J Hepatol
, vol.60
, pp. 940-947
-
-
Bajaj, J.S.1
Heuman, D.M.2
Hylemon, P.B.3
Sanyal, A.J.4
White, M.B.5
Monteith, P.6
-
5
-
-
85026373168
-
Fungal dysbiosis in cirrhosis
-
[Epub ahead of print]
-
Bajaj JS, Liu EJ, Kheradman R, Fagan A, Heuman DM, White M, et al. Fungal dysbiosis in cirrhosis. Gut 2017; doi: 10.1136/gutjnl-2016-313170. [Epub ahead of print]
-
(2017)
Gut
-
-
Bajaj, J.S.1
Liu, E.J.2
Kheradman, R.3
Fagan, A.4
Heuman, D.M.5
White, M.6
-
6
-
-
85026856382
-
Fecal microbiota transplant from a rational stool donor improves hepatic encephalopathy: a randomized clinical trial
-
Bajaj JS, Kassam Z, Fagan A, Gavis EA, Liu E, Cox IJ, Kheradman R, et al. Fecal microbiota transplant from a rational stool donor improves hepatic encephalopathy: a randomized clinical trial. Hepatology 2017;66:1727-1738
-
(2017)
Hepatology
, vol.66
, pp. 1727-1738
-
-
Bajaj, J.S.1
Kassam, Z.2
Fagan, A.3
Gavis, E.A.4
Liu, E.5
Cox, I.J.6
Kheradman, R.7
-
7
-
-
85014514231
-
Pretreatment with antibiotics may enhance the efficacy of fecal microbiota transplantation in ulcerative colitis: a meta-analysis
-
Keshteli AH, Millan B, Madsen KL. Pretreatment with antibiotics may enhance the efficacy of fecal microbiota transplantation in ulcerative colitis: a meta-analysis. Mucosal Immunol 2017;10:565-566
-
(2017)
Mucosal Immunol
, vol.10
, pp. 565-566
-
-
Keshteli, A.H.1
Millan, B.2
Madsen, K.L.3
-
8
-
-
79959383523
-
Metagenomic biomarker discovery and explanation
-
Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett WS, et al. Metagenomic biomarker discovery and explanation. Genome Biol 2011;12:R60
-
(2011)
Genome Biol
, vol.12
, pp. R60
-
-
Segata, N.1
Izard, J.2
Waldron, L.3
Gevers, D.4
Miropolsky, L.5
Garrett, W.S.6
-
9
-
-
85054407023
-
-
454 Overview tutorial, de novo, OTU picking and diversity analyses using 454 data., Accessed May, 2018.
-
Quantitative Insights into Microbial Ecology. 454 Overview tutorial: de novo OTU picking and diversity analyses using 454 data. http://qiime.org/tutorials/tutorial.html. Accessed May, 2018
-
Quantitative Insights into Microbial Ecology
-
-
-
10
-
-
84899508969
-
A simple and accurate HPLC method for fecal bile acid profile in healthy and cirrhotic subjects: validation by GC-MS and LC-MS
-
Kakiyama G, Muto A, Takei H, Nittono H, Murai T, Kurosawa T, et al. A simple and accurate HPLC method for fecal bile acid profile in healthy and cirrhotic subjects: validation by GC-MS and LC-MS. J Lipid Res 2014;55:978-990
-
(2014)
J Lipid Res
, vol.55
, pp. 978-990
-
-
Kakiyama, G.1
Muto, A.2
Takei, H.3
Nittono, H.4
Murai, T.5
Kurosawa, T.6
-
11
-
-
84884127512
-
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
-
Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, et al. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat Biotechnol 2013;31:814-821
-
(2013)
Nat Biotechnol
, vol.31
, pp. 814-821
-
-
Langille, M.G.1
Zaneveld, J.2
Caporaso, J.G.3
McDonald, D.4
Knights, D.5
Reyes, J.A.6
-
12
-
-
83755186465
-
Linkage of gut microbiome with cognition in hepatic encephalopathy
-
Bajaj JS, Ridlon JM, Hylemon PB, Thacker LR, Heuman DM, Smith S, et al. Linkage of gut microbiome with cognition in hepatic encephalopathy. Am J Physiol Gastrointest Liver Physiol 2012;302:G168-G175
-
(2012)
Am J Physiol Gastrointest Liver Physiol
, vol.302
, pp. G168-G175
-
-
Bajaj, J.S.1
Ridlon, J.M.2
Hylemon, P.B.3
Thacker, L.R.4
Heuman, D.M.5
Smith, S.6
-
14
-
-
84976509929
-
The 3-month readmission rate remains unacceptably high in a large North American cohort of patients with cirrhosis
-
Bajaj JS, Reddy KR, Tandon P, Wong F, Kamath PS, Garcia-Tsao G, et al. The 3-month readmission rate remains unacceptably high in a large North American cohort of patients with cirrhosis. Hepatology 2016;64:200-208
-
(2016)
Hepatology
, vol.64
, pp. 200-208
-
-
Bajaj, J.S.1
Reddy, K.R.2
Tandon, P.3
Wong, F.4
Kamath, P.S.5
Garcia-Tsao, G.6
-
15
-
-
84856722705
-
Hospital readmissions among patients with decompensated cirrhosis
-
Volk ML, Tocco RS, Bazick J, Rakoski MO, Lok AS. Hospital readmissions among patients with decompensated cirrhosis. Am J Gastroenterol 2012;107:247-252
-
(2012)
Am J Gastroenterol
, vol.107
, pp. 247-252
-
-
Volk, M.L.1
Tocco, R.S.2
Bazick, J.3
Rakoski, M.O.4
Lok, A.S.5
-
16
-
-
85040824577
-
Bacterial and fungal infections in acute-on-chronic liver failure: prevalence, characteristics and impact on prognosis
-
[Epub ahead of print]
-
Fernandez J, Acevedo J, Wiest R, Gustot T, Amoros A, Deulofeu C, et al. Bacterial and fungal infections in acute-on-chronic liver failure: prevalence, characteristics and impact on prognosis. Gut 2017; doi: 10.1136/gutjnl-2017-314240. [Epub ahead of print]
-
(2017)
Gut
-
-
Fernandez, J.1
Acevedo, J.2
Wiest, R.3
Gustot, T.4
Amoros, A.5
Deulofeu, C.6
-
18
-
-
85044816654
-
Prediction of fungal infection development and their impact on survival using the NACSELD cohort
-
Bajaj JS, Reddy KR, Tandon P, Wong F, Kamath PS, Biggins SW, et al. Prediction of fungal infection development and their impact on survival using the NACSELD cohort. Am J Gastroenterol 2018;113:556-563
-
(2018)
Am J Gastroenterol
, vol.113
, pp. 556-563
-
-
Bajaj, J.S.1
Reddy, K.R.2
Tandon, P.3
Wong, F.4
Kamath, P.S.5
Biggins, S.W.6
-
19
-
-
84942553848
-
Salivary microbiota-immune profiling in cirrhosis: could this be the noninvasive strategy that will revolutionize prognostication in hepatology?
-
Patel VC, Shawcross DL. Salivary microbiota-immune profiling in cirrhosis: could this be the noninvasive strategy that will revolutionize prognostication in hepatology? Hepatology 2015;62:1001-1003
-
(2015)
Hepatology
, vol.62
, pp. 1001-1003
-
-
Patel, V.C.1
Shawcross, D.L.2
-
20
-
-
84937890366
-
Gut dysbiosis in acute-on-chronic liver failure and its predictive value for mortality
-
Chen Y, Guo J, Qian G, Fang D, Shi D, Guo L, et al. Gut dysbiosis in acute-on-chronic liver failure and its predictive value for mortality. J Gastroenterol Hepatol 2015;30:1429-1437
-
(2015)
J Gastroenterol Hepatol
, vol.30
, pp. 1429-1437
-
-
Chen, Y.1
Guo, J.2
Qian, G.3
Fang, D.4
Shi, D.5
Guo, L.6
-
21
-
-
84876294967
-
Modulation of the fecal bile acid profile by gut microbiota in cirrhosis
-
Kakiyama G, Pandak WM, Gillevet PM, Hylemon PB, Heuman DM, Daita K, et al. Modulation of the fecal bile acid profile by gut microbiota in cirrhosis. J Hepatol 2013;58:949-955
-
(2013)
J Hepatol
, vol.58
, pp. 949-955
-
-
Kakiyama, G.1
Pandak, W.M.2
Gillevet, P.M.3
Hylemon, P.B.4
Heuman, D.M.5
Daita, K.6
-
22
-
-
84904749223
-
Hepatic encephalopathy in chronic liver disease: 2014 practice guideline by the American Association for the Study of Liver Diseases and the European Association for the Study of the Liver
-
Vilstrup H, Amodio P, Bajaj J, Cordoba J, Ferenci P, Mullen KD, et al. Hepatic encephalopathy in chronic liver disease: 2014 practice guideline by the American Association for the Study of Liver Diseases and the European Association for the Study of the Liver. Hepatology 2014;60:715-735
-
(2014)
Hepatology
, vol.60
, pp. 715-735
-
-
Vilstrup, H.1
Amodio, P.2
Bajaj, J.3
Cordoba, J.4
Ferenci, P.5
Mullen, K.D.6
-
23
-
-
77950246404
-
Rifaximin treatment in hepatic encephalopathy
-
Bass NM, Mullen KD, Sanyal A, Poordad F, Neff G, Leevy CB, et al. Rifaximin treatment in hepatic encephalopathy. N Engl J Med 2010;362:1071-1081
-
(2010)
N Engl J Med
, vol.362
, pp. 1071-1081
-
-
Bass, N.M.1
Mullen, K.D.2
Sanyal, A.3
Poordad, F.4
Neff, G.5
Leevy, C.B.6
-
24
-
-
84875670330
-
Modulation of the metabiome by rifaximin in patients with cirrhosis and minimal hepatic encephalopathy
-
Bajaj JS, Heuman DM, Sanyal AJ, Hylemon PB, Sterling RK, Stravitz RT, et al. Modulation of the metabiome by rifaximin in patients with cirrhosis and minimal hepatic encephalopathy. PLoS One 2013;8:e60042
-
(2013)
PLoS One
, vol.8
-
-
Bajaj, J.S.1
Heuman, D.M.2
Sanyal, A.J.3
Hylemon, P.B.4
Sterling, R.K.5
Stravitz, R.T.6
-
25
-
-
85122958883
-
Rifaximin exerts beneficial effects independent of its ability to alter microbiota composition
-
Kang DJ, Kakiyama G, Betrapally NS, Herzog J, Nittono H, Hylemon PB, et al. Rifaximin exerts beneficial effects independent of its ability to alter microbiota composition. Clin Transl Gastroenterol 2016;7:e187
-
(2016)
Clin Transl Gastroenterol
, vol.7
-
-
Kang, D.J.1
Kakiyama, G.2
Betrapally, N.S.3
Herzog, J.4
Nittono, H.5
Hylemon, P.B.6
-
26
-
-
84896709238
-
Randomized, double-blind, controlled study of glycerol phenylbutyrate in hepatic encephalopathy
-
Rockey DC, Vierling JM, Mantry P, Ghabril M, Brown RS Jr, Alexeeva O, et al. Randomized, double-blind, controlled study of glycerol phenylbutyrate in hepatic encephalopathy. Hepatology 2014;59:1073-1083
-
(2014)
Hepatology
, vol.59
, pp. 1073-1083
-
-
Rockey, D.C.1
Vierling, J.M.2
Mantry, P.3
Ghabril, M.4
Brown, R.S.5
Alexeeva, O.6
-
27
-
-
33947428441
-
The model for end-stage liver disease (MELD)
-
Kamath PS, Kim WR; Advanced Liver Disease Study Group. The model for end-stage liver disease (MELD). Hepatology 2007;45:797-805
-
(2007)
Hepatology
, vol.45
, pp. 797-805
-
-
Kamath, P.S.1
Kim, W.R.2
-
28
-
-
79959496268
-
Diversity of the autochthonous colonic microbiota
-
Nava GM, Stappenbeck TS. Diversity of the autochthonous colonic microbiota. Gut Microbes 2011;2:99-104
-
(2011)
Gut Microbes
, vol.2
, pp. 99-104
-
-
Nava, G.M.1
Stappenbeck, T.S.2
-
29
-
-
84875258580
-
Bile acids as modulators of gut microbiota linking dietary habits and inflammatory bowel disease: a potentially dangerous liaison
-
Trauner M, Fickert P, Tilg H. Bile acids as modulators of gut microbiota linking dietary habits and inflammatory bowel disease: a potentially dangerous liaison. Gastroenterology 2013;144:844-846
-
(2013)
Gastroenterology
, vol.144
, pp. 844-846
-
-
Trauner, M.1
Fickert, P.2
Tilg, H.3
-
30
-
-
84960375270
-
Consequences of bile salt biotransformations by intestinal bacteria
-
Ridlon JM, Harris SC, Bhowmik S, Kang DJ, Hylemon PB. Consequences of bile salt biotransformations by intestinal bacteria. Gut Microbes 2016;7:22-39
-
(2016)
Gut Microbes
, vol.7
, pp. 22-39
-
-
Ridlon, J.M.1
Harris, S.C.2
Bhowmik, S.3
Kang, D.J.4
Hylemon, P.B.5
-
31
-
-
33244467651
-
Bile salt biotransformations by human intestinal bacteria
-
Ridlon JM, Kang DJ, Hylemon PB. Bile salt biotransformations by human intestinal bacteria. J Lipid Res 2006;47:241-259
-
(2006)
J Lipid Res
, vol.47
, pp. 241-259
-
-
Ridlon, J.M.1
Kang, D.J.2
Hylemon, P.B.3
-
32
-
-
64349115740
-
Bile acid sulfation: a pathway of bile acid elimination and detoxification
-
Alnouti Y. Bile acid sulfation: a pathway of bile acid elimination and detoxification. Toxicol Sci 2009;108:225-246
-
(2009)
Toxicol Sci
, vol.108
, pp. 225-246
-
-
Alnouti, Y.1
-
33
-
-
84962195820
-
Intestinal short chain fatty acids and their link with diet and human health
-
Rios-Covian D, Ruas-Madiedo P, Margolles A, Gueimonde M, de Los Reyes-Gavilan CG, Salazar N. Intestinal short chain fatty acids and their link with diet and human health. Front Microbiol 2016;7:185
-
(2016)
Front Microbiol
, vol.7
, pp. 185
-
-
Rios-Covian, D.1
Ruas-Madiedo, P.2
Margolles, A.3
Gueimonde, M.4
de Los Reyes-Gavilan, C.G.5
Salazar, N.6
-
34
-
-
84876841275
-
Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model
-
Van den Abbeele P, Belzer C, Goossens M, Kleerebezem M, De Vos WM, Thas O, et al. Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model. ISME J 2013;7:949-961
-
(2013)
ISME J
, vol.7
, pp. 949-961
-
-
Van den Abbeele, P.1
Belzer, C.2
Goossens, M.3
Kleerebezem, M.4
De Vos, W.M.5
Thas, O.6
-
35
-
-
18744418254
-
Branched-chain amino acids for people with hepatic encephalopathy
-
Gluud LL, Dam G, Les I, Marchesini G, Borre M, Aagaard NK, et al. Branched-chain amino acids for people with hepatic encephalopathy. Cochrane Database Syst Rev 2017;5:CD001939
-
(2017)
Cochrane Database Syst Rev
, vol.5
, pp. CD001939
-
-
Gluud, L.L.1
Dam, G.2
Les, I.3
Marchesini, G.4
Borre, M.5
Aagaard, N.K.6
-
36
-
-
84938567685
-
Butyrate modulates bacterial adherence on LS174T human colorectal cells by stimulating mucin secretion and MAPK signaling pathway
-
Jung TH, Park JH, Jeon WM, Han KS. Butyrate modulates bacterial adherence on LS174T human colorectal cells by stimulating mucin secretion and MAPK signaling pathway. Nutr Res Pract 2015;9:343-349
-
(2015)
Nutr Res Pract
, vol.9
, pp. 343-349
-
-
Jung, T.H.1
Park, J.H.2
Jeon, W.M.3
Han, K.S.4
-
38
-
-
84904048875
-
A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis
-
Machiels K, Joossens M, Sabino J, De Preter V, Arijs I, Eeckhaut V, et al. A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis. Gut 2014;63:1275-1283
-
(2014)
Gut
, vol.63
, pp. 1275-1283
-
-
Machiels, K.1
Joossens, M.2
Sabino, J.3
De Preter, V.4
Arijs, I.5
Eeckhaut, V.6
-
40
-
-
84999633694
-
Sensitive and simplified detection of antibiotic influence on the dynamic and versatile changes of fecal short-chain fatty acids
-
Zhao X, Jiang Z, Yang F, Wang Y, Gao X, Wang Y, et al. Sensitive and simplified detection of antibiotic influence on the dynamic and versatile changes of fecal short-chain fatty acids. PLoS One 2016;11:e0167032
-
(2016)
PLoS One
, vol.11
-
-
Zhao, X.1
Jiang, Z.2
Yang, F.3
Wang, Y.4
Gao, X.5
Wang, Y.6
-
41
-
-
84866738529
-
Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome
-
Vrieze A, Van Nood E, Holleman F, Salojarvi J, Kootte RS, Bartelsman JF, et al. Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome. Gastroenterology 2012;143:913-916
-
(2012)
Gastroenterology
, vol.143
, pp. 913-916
-
-
Vrieze, A.1
Van Nood, E.2
Holleman, F.3
Salojarvi, J.4
Kootte, R.S.5
Bartelsman, J.F.6
-
42
-
-
84894105226
-
Microbiota transplantation restores normal fecal bile acid composition in recurrent Clostridium difficile infection
-
Weingarden AR, Chen C, Bobr A, Yao D, Lu Y, Nelson VM, et al. Microbiota transplantation restores normal fecal bile acid composition in recurrent Clostridium difficile infection. Am J Physiol Gastrointest Liver Physiol 2014;306:G310-G319
-
(2014)
Am J Physiol Gastrointest Liver Physiol
, vol.306
, pp. G310-G319
-
-
Weingarden, A.R.1
Chen, C.2
Bobr, A.3
Yao, D.4
Lu, Y.5
Nelson, V.M.6
-
43
-
-
34248152283
-
Long-term ecological impacts of antibiotic administration on the human intestinal microbiota
-
Jernberg C, Lofmark S, Edlund C, Jansson JK. Long-term ecological impacts of antibiotic administration on the human intestinal microbiota. ISME J 2007;1:56-66
-
(2007)
ISME J
, vol.1
, pp. 56-66
-
-
Jernberg, C.1
Lofmark, S.2
Edlund, C.3
Jansson, J.K.4
|