-
1
-
-
84928914690
-
Continental-scale distributions of dust-associated bacteria and fungi
-
Barberán, A., Ladau, J., Leff, J.W., Pollard, K.S., Menninger, H.L., Dunn, R.R., Fierer, N., Continental-scale distributions of dust-associated bacteria and fungi. Proc. Natl. Acad. Sci. USA 112 (2015), 5756–5761.
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. 5756-5761
-
-
Barberán, A.1
Ladau, J.2
Leff, J.W.3
Pollard, K.S.4
Menninger, H.L.5
Dunn, R.R.6
Fierer, N.7
-
2
-
-
84942321168
-
Challenges and opportunities of airborne metagenomics
-
Behzad, H., Gojobori, T., Mineta, K., Challenges and opportunities of airborne metagenomics. Genome Biol. Evol. 7 (2015), 1216–1226.
-
(2015)
Genome Biol. Evol.
, vol.7
, pp. 1216-1226
-
-
Behzad, H.1
Gojobori, T.2
Mineta, K.3
-
3
-
-
85010953137
-
Bioconductor workflow for microbiome data analysis: from raw reads to community analyses
-
Callahan, B.J., Sankaran, K., Fukuyama, J.A., McMurdie, P.J., Holmes, S.P., Bioconductor workflow for microbiome data analysis: from raw reads to community analyses. F1000Res., 5, 2016, 1492.
-
(2016)
F1000Res.
, vol.5
, pp. 1492
-
-
Callahan, B.J.1
Sankaran, K.2
Fukuyama, J.A.3
McMurdie, P.J.4
Holmes, S.P.5
-
4
-
-
84893535422
-
Inhalable microorganisms in Beijing's PM2.5 and PM10 pollutants during a severe smog event
-
Cao, C., Jiang, W., Wang, B., Fang, J., Lang, J., Tian, G., Jiang, J., Zhu, T.F., Inhalable microorganisms in Beijing's PM2.5 and PM10 pollutants during a severe smog event. Environ. Sci. Technol. 48 (2014), 1499–1507.
-
(2014)
Environ. Sci. Technol.
, vol.48
, pp. 1499-1507
-
-
Cao, C.1
Jiang, W.2
Wang, B.3
Fang, J.4
Lang, J.5
Tian, G.6
Jiang, J.7
Zhu, T.F.8
-
5
-
-
46149104377
-
Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution
-
Carroll, S.B., Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution. Cell 134 (2008), 25–36.
-
(2008)
Cell
, vol.134
, pp. 25-36
-
-
Carroll, S.B.1
-
6
-
-
84858433310
-
Personal omics profiling reveals dynamic molecular and medical phenotypes
-
Chen, R., Mias, G.I., Li-Pook-Than, J., Jiang, L., Lam, H.Y.K., Chen, R., Miriami, E., Karczewski, K.J., Hariharan, M., Dewey, F.E., et al. Personal omics profiling reveals dynamic molecular and medical phenotypes. Cell 148 (2012), 1293–1307.
-
(2012)
Cell
, vol.148
, pp. 1293-1307
-
-
Chen, R.1
Mias, G.I.2
Li-Pook-Than, J.3
Jiang, L.4
Lam, H.Y.K.5
Chen, R.6
Miriami, E.7
Karczewski, K.J.8
Hariharan, M.9
Dewey, F.E.10
-
7
-
-
84864367389
-
Community ecology in the age of multivariate multiscale spatial analysis
-
Dray, S., Pélissier, R., Couteron, P., Fortin, M.-J., Legendre, P., Peres-Neto, P.R., Bellier, E., Bivand, R., Blanchet, F.G., De Cáceres, M., et al. Community ecology in the age of multivariate multiscale spatial analysis. Ecol. Monogr. 82 (2012), 257–275.
-
(2012)
Ecol. Monogr.
, vol.82
, pp. 257-275
-
-
Dray, S.1
Pélissier, R.2
Couteron, P.3
Fortin, M.-J.4
Legendre, P.5
Peres-Neto, P.R.6
Bellier, E.7
Bivand, R.8
Blanchet, F.G.9
De Cáceres, M.10
-
8
-
-
84882826169
-
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga
-
Flot, J.-F., Hespeels, B., Li, X., Noel, B., Arkhipova, I., Danchin, E.G.J., Hejnol, A., Henrissat, B., Koszul, R., Aury, J.-M., et al. Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga. Nature 500 (2013), 453–457.
-
(2013)
Nature
, vol.500
, pp. 453-457
-
-
Flot, J.-F.1
Hespeels, B.2
Li, X.3
Noel, B.4
Arkhipova, I.5
Danchin, E.G.J.6
Hejnol, A.7
Henrissat, B.8
Koszul, R.9
Aury, J.-M.10
-
9
-
-
84901847186
-
Relating the metatranscriptome and metagenome of the human gut
-
Franzosa, E.A., Morgan, X.C., Segata, N., Waldron, L., Reyes, J., Earl, A.M., Giannoukos, G., Boylan, M.R., Ciulla, D., Gevers, D., et al. Relating the metatranscriptome and metagenome of the human gut. Proc. Natl. Acad. Sci. USA 111 (2014), E2329–E2338.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. E2329-E2338
-
-
Franzosa, E.A.1
Morgan, X.C.2
Segata, N.3
Waldron, L.4
Reyes, J.5
Earl, A.M.6
Giannoukos, G.7
Boylan, M.R.8
Ciulla, D.9
Gevers, D.10
-
10
-
-
77950537175
-
Regularization paths for generalized linear models via coordinate descent
-
Friedman, J., Hastie, T., Tibshirani, R., Regularization paths for generalized linear models via coordinate descent. J. Stat. Softw. 33 (2010), 1–22.
-
(2010)
J. Stat. Softw.
, vol.33
, pp. 1-22
-
-
Friedman, J.1
Hastie, T.2
Tibshirani, R.3
-
11
-
-
84892562813
-
House dust exposure mediates gut microbiome Lactobacillus enrichment and airway immune defense against allergens and virus infection
-
Fujimura, K.E., Demoor, T., Rauch, M., Faruqi, A.A., Jang, S., Johnson, C.C., Boushey, H.A., Zoratti, E., Ownby, D., Lukacs, N.W., Lynch, S.V., House dust exposure mediates gut microbiome Lactobacillus enrichment and airway immune defense against allergens and virus infection. Proc. Natl. Acad. Sci. USA 111 (2014), 805–810.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. 805-810
-
-
Fujimura, K.E.1
Demoor, T.2
Rauch, M.3
Faruqi, A.A.4
Jang, S.5
Johnson, C.C.6
Boushey, H.A.7
Zoratti, E.8
Ownby, D.9
Lukacs, N.W.10
Lynch, S.V.11
-
12
-
-
83055163797
-
A data processing pipeline for mammalian proteome dynamics studies using stable isotope metabolic labeling
-
Guan, S., Price, J.C., Prusiner, S.B., Ghaemmaghami, S., Burlingame, A.L., A data processing pipeline for mammalian proteome dynamics studies using stable isotope metabolic labeling. Mol. Cell. Proteomics, 10, 2011, 010728.
-
(2011)
Mol. Cell. Proteomics
, vol.10
, pp. 010728
-
-
Guan, S.1
Price, J.C.2
Prusiner, S.B.3
Ghaemmaghami, S.4
Burlingame, A.L.5
-
13
-
-
84896705451
-
Sequential evolution of bacterial morphology by co-option of a developmental regulator
-
Jiang, C., Brown, P.J.B., Ducret, A., Brun, Y.V., Sequential evolution of bacterial morphology by co-option of a developmental regulator. Nature 506 (2014), 489–493.
-
(2014)
Nature
, vol.506
, pp. 489-493
-
-
Jiang, C.1
Brown, P.J.B.2
Ducret, A.3
Brun, Y.V.4
-
14
-
-
84953791854
-
Synthetic long-read sequencing reveals intraspecies diversity in the human microbiome
-
Kuleshov, V., Jiang, C., Zhou, W., Jahanbani, F., Batzoglou, S., Snyder, M., Synthetic long-read sequencing reveals intraspecies diversity in the human microbiome. Nat. Biotechnol. 34 (2016), 64–69.
-
(2016)
Nat. Biotechnol.
, vol.34
, pp. 64-69
-
-
Kuleshov, V.1
Jiang, C.2
Zhou, W.3
Jahanbani, F.4
Batzoglou, S.5
Snyder, M.6
-
15
-
-
85033671389
-
Transcriptomic and epigenetic responses to short-term nutrient-exercise stress in humans
-
Laker, R.C., Garde, C., Camera, D.M., Smiles, W.J., Zierath, J.R., Hawley, J.A., Barrès, R., Transcriptomic and epigenetic responses to short-term nutrient-exercise stress in humans. Sci. Rep., 7, 2017, 15134.
-
(2017)
Sci. Rep.
, vol.7
, pp. 15134
-
-
Laker, R.C.1
Garde, C.2
Camera, D.M.3
Smiles, W.J.4
Zierath, J.R.5
Hawley, J.A.6
Barrès, R.7
-
16
-
-
84907190237
-
Longitudinal analysis of microbial interaction between humans and the indoor environment
-
Lax, S., Smith, D.P., Hampton-Marcell, J., Owens, S.M., Handley, K.M., Scott, N.M., Gibbons, S.M., Larsen, P., Shogan, B.D., Weiss, S., et al. Longitudinal analysis of microbial interaction between humans and the indoor environment. Science 345 (2014), 1048–1052.
-
(2014)
Science
, vol.345
, pp. 1048-1052
-
-
Lax, S.1
Smith, D.P.2
Hampton-Marcell, J.3
Owens, S.M.4
Handley, K.M.5
Scott, N.M.6
Gibbons, S.M.7
Larsen, P.8
Shogan, B.D.9
Weiss, S.10
-
17
-
-
79960004119
-
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
-
W475-8
-
Letunic, I., Bork, P., Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res., 39, 2011 W475-8.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Letunic, I.1
Bork, P.2
-
18
-
-
84929626808
-
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
-
Li, D., Liu, C.-M., Luo, R., Sadakane, K., Lam, T.-W., MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph. Bioinformatics 31 (2015), 1674–1676.
-
(2015)
Bioinformatics
, vol.31
, pp. 1674-1676
-
-
Li, D.1
Liu, C.-M.2
Luo, R.3
Sadakane, K.4
Lam, T.-W.5
-
19
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
-
Love, M.I., Huber, W., Anders, S., Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol., 15, 2014, 550.
-
(2014)
Genome Biol.
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
20
-
-
85006760053
-
Seasonal succession of free-living bacterial communities in coastal waters of the Western Antarctic Peninsula
-
Luria, C.M., Amaral-Zettler, L.A., Ducklow, H.W., Rich, J.J., Seasonal succession of free-living bacterial communities in coastal waters of the Western Antarctic Peninsula. Front. Microbiol., 7, 2016, 1731.
-
(2016)
Front. Microbiol.
, vol.7
, pp. 1731
-
-
Luria, C.M.1
Amaral-Zettler, L.A.2
Ducklow, H.W.3
Rich, J.J.4
-
21
-
-
36849073228
-
Respiratory effects of exposure to diesel traffic in persons with asthma
-
McCreanor, J., Cullinan, P., Nieuwenhuijsen, M.J., Stewart-Evans, J., Malliarou, E., Jarup, L., Harrington, R., Svartengren, M., Han, I.-K., Ohman-Strickland, P., et al. Respiratory effects of exposure to diesel traffic in persons with asthma. N. Engl. J. Med. 357 (2007), 2348–2358.
-
(2007)
N. Engl. J. Med.
, vol.357
, pp. 2348-2358
-
-
McCreanor, J.1
Cullinan, P.2
Nieuwenhuijsen, M.J.3
Stewart-Evans, J.4
Malliarou, E.5
Jarup, L.6
Harrington, R.7
Svartengren, M.8
Han, I.-K.9
Ohman-Strickland, P.10
-
22
-
-
84876427223
-
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data
-
McMurdie, P.J., Holmes, S., phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS ONE, 8, 2013, e61217.
-
(2013)
PLoS ONE
, vol.8
, pp. e61217
-
-
McMurdie, P.J.1
Holmes, S.2
-
23
-
-
84901363655
-
Waste not, want not: why rarefying microbiome data is inadmissible
-
McMurdie, P.J., Holmes, S., Waste not, want not: why rarefying microbiome data is inadmissible. PLoS Comput. Biol., 10, 2014, e1003531.
-
(2014)
PLoS Comput. Biol.
, vol.10
, pp. e1003531
-
-
McMurdie, P.J.1
Holmes, S.2
-
24
-
-
84944886700
-
Humans differ in their personal microbial cloud
-
Meadow, J.F., Altrichter, A.E., Bateman, A.C., Stenson, J., Brown, G.Z., Green, J.L., Bohannan, B.J.M., Humans differ in their personal microbial cloud. PeerJ, 3, 2015, e1258.
-
(2015)
PeerJ
, vol.3
, pp. e1258
-
-
Meadow, J.F.1
Altrichter, A.E.2
Bateman, A.C.3
Stenson, J.4
Brown, G.Z.5
Green, J.L.6
Bohannan, B.J.M.7
-
25
-
-
0036932214
-
How much variance can be explained by ecologists and evolutionary biologists?
-
Møller, A., Jennions, M.D., How much variance can be explained by ecologists and evolutionary biologists?. Oecologia 132 (2002), 492–500.
-
(2002)
Oecologia
, vol.132
, pp. 492-500
-
-
Møller, A.1
Jennions, M.D.2
-
26
-
-
84898943638
-
Silicone wristbands as personal passive samplers
-
O'Connell, S.G., Kincl, L.D., Anderson, K.A., Silicone wristbands as personal passive samplers. Environ. Sci. Technol. 48 (2014), 3327–3335.
-
(2014)
Environ. Sci. Technol.
, vol.48
, pp. 3327-3335
-
-
O'Connell, S.G.1
Kincl, L.D.2
Anderson, K.A.3
-
27
-
-
78751696965
-
Environmental exposures and mutational patterns of cancer genomes
-
Pfeifer, G.P., Environmental exposures and mutational patterns of cancer genomes. Genome Med., 2, 2010, 54.
-
(2010)
Genome Med.
, vol.2
, pp. 54
-
-
Pfeifer, G.P.1
-
28
-
-
84907852093
-
Global biotic interactions: An open infrastructure to share and analyze species-interaction datasets
-
Poelen, J.H., Simons, J.D., Mungall, C.J., Global biotic interactions: An open infrastructure to share and analyze species-interaction datasets. Ecol. Inform. 24 (2014), 148–159.
-
(2014)
Ecol. Inform.
, vol.24
, pp. 148-159
-
-
Poelen, J.H.1
Simons, J.D.2
Mungall, C.J.3
-
29
-
-
84881138595
-
Insights into the phylogeny and coding potential of microbial dark matter
-
Rinke, C., Schwientek, P., Sczyrba, A., Ivanova, N.N., Anderson, I.J., Cheng, J.-F., Darling, A., Malfatti, S., Swan, B.K., Gies, E.A., et al. Insights into the phylogeny and coding potential of microbial dark matter. Nature 499 (2013), 431–437.
-
(2013)
Nature
, vol.499
, pp. 431-437
-
-
Rinke, C.1
Schwientek, P.2
Sczyrba, A.3
Ivanova, N.N.4
Anderson, I.J.5
Cheng, J.-F.6
Darling, A.7
Malfatti, S.8
Swan, B.K.9
Gies, E.A.10
-
30
-
-
84871732071
-
Genomic variation landscape of the human gut microbiome
-
Schloissnig, S., Arumugam, M., Sunagawa, S., Mitreva, M., Tap, J., Zhu, A., Waller, A., Mende, D.R., Kultima, J.R., Martin, J., et al. Genomic variation landscape of the human gut microbiome. Nature 493 (2013), 45–50.
-
(2013)
Nature
, vol.493
, pp. 45-50
-
-
Schloissnig, S.1
Arumugam, M.2
Sunagawa, S.3
Mitreva, M.4
Tap, J.5
Zhu, A.6
Waller, A.7
Mende, D.R.8
Kultima, J.R.9
Martin, J.10
-
31
-
-
84923171042
-
Multivariate Analysis of Ecological Data using CANOCO 5
-
Cambridge University Press
-
Smilauer, P., Lepš J., Multivariate Analysis of Ecological Data using CANOCO 5. 2014, Cambridge University Press.
-
(2014)
-
-
Smilauer, P.1
Lepš, J.2
-
32
-
-
32444432587
-
METLIN: a metabolite mass spectral database
-
Smith, C.A., O'Maille, G., Want, E.J., Qin, C., Trauger, S.A., Brandon, T.R., Custodio, D.E., Abagyan, R., Siuzdak, G., METLIN: a metabolite mass spectral database. Ther. Drug Monit. 27 (2005), 747–751.
-
(2005)
Ther. Drug Monit.
, vol.27
, pp. 747-751
-
-
Smith, C.A.1
O'Maille, G.2
Want, E.J.3
Qin, C.4
Trauger, S.A.5
Brandon, T.R.6
Custodio, D.E.7
Abagyan, R.8
Siuzdak, G.9
-
33
-
-
79955082802
-
Methodological challenges when estimating the effects of season and seasonal exposures on birth outcomes
-
Strand, L.B., Barnett, A.G., Tong, S., Methodological challenges when estimating the effects of season and seasonal exposures on birth outcomes. BMC Med. Res. Methodol., 11, 2011, 49.
-
(2011)
BMC Med. Res. Methodol.
, vol.11
, pp. 49
-
-
Strand, L.B.1
Barnett, A.G.2
Tong, S.3
-
34
-
-
84929992013
-
Ocean plankton. Structure and function of the global ocean microbiome
-
Sunagawa, S., Coelho, L.P., Chaffron, S., Kultima, J.R., Labadie, K., Salazar, G., Djahanschiri, B., Zeller, G., Mende, D.R., Alberti, A., et al., Tara Oceans coordinators. Ocean plankton. Structure and function of the global ocean microbiome. Science, 348, 2015, 1261359.
-
(2015)
Science
, vol.348
, pp. 1261359
-
-
Sunagawa, S.1
Coelho, L.P.2
Chaffron, S.3
Kultima, J.R.4
Labadie, K.5
Salazar, G.6
Djahanschiri, B.7
Zeller, G.8
Mende, D.R.9
Alberti, A.10
-
35
-
-
85034804875
-
A communal catalogue reveals Earth's multiscale microbial diversity
-
Thompson, L.R., Sanders, J.G., McDonald, D., Amir, A., Ladau, J., Locey, K.J., Prill, R.J., Tripathi, A., Gibbons, S.M., Ackermann, G., et al., Earth Microbiome Project Consortium. A communal catalogue reveals Earth's multiscale microbial diversity. Nature 551 (2017), 457–463.
-
(2017)
Nature
, vol.551
, pp. 457-463
-
-
Thompson, L.R.1
Sanders, J.G.2
McDonald, D.3
Amir, A.4
Ladau, J.5
Locey, K.J.6
Prill, R.J.7
Tripathi, A.8
Gibbons, S.M.9
Ackermann, G.10
-
36
-
-
85016121430
-
Stem cell divisions, somatic mutations, cancer etiology, and cancer prevention
-
Tomasetti, C., Li, L., Vogelstein, B., Stem cell divisions, somatic mutations, cancer etiology, and cancer prevention. Science 355 (2017), 1330–1334.
-
(2017)
Science
, vol.355
, pp. 1330-1334
-
-
Tomasetti, C.1
Li, L.2
Vogelstein, B.3
-
37
-
-
84959934797
-
Database of host-pathogen and related species interactions, and their global distribution
-
Wardeh, M., Risley, C., McIntyre, M.K., Setzkorn, C., Baylis, M., Database of host-pathogen and related species interactions, and their global distribution. Sci. Data, 2, 2015, 150049.
-
(2015)
Sci. Data
, vol.2
, pp. 150049
-
-
Wardeh, M.1
Risley, C.2
McIntyre, M.K.3
Setzkorn, C.4
Baylis, M.5
|