LDAP: A web server for lncRNA-disease association prediction

Bioinformatics

Volumn 33, Issue 3, 2017, Pages 458-460

  Lan, Wei ^a   Li, Min ^a   Zhao, Kaijie ^a   Liu, Jin ^a   Wu, Fang Xiang ^b   Pan, Yi ^c   Wang, Jianxin ^a  

^a CENTRAL SOUTH UNIVERSITY   (China)

^b UNIVERSITY OF SASKATCHEWAN   (Canada)

^c GEORGIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

LONG UNTRANSLATED RNA;

BIOLOGY; DISEASES; GENETICS; HUMAN; METABOLISM; PHYSIOLOGY; PROCEDURES; SOFTWARE;

COMPUTATIONAL BIOLOGY; DISEASE; HUMANS; RNA, LONG NONCODING; SOFTWARE;

EID: 85051223069     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btw639     Document Type: Article

References (22)

1. Ahmed, I.A. et al. (2010) Epigenetic alterations by methylation of RASSF1A and DAPK1 promoter sequences in mammary carcinoma detected in extracellular tumor DNA. Cancer Genet. Cytogenet., 199, 96 100.
2. Chen, G. et al. (2013a) LncRNADisease: A database for long noncoding RNA associated diseases. Nucleic Acids Res., 41, 983 986.
3. Chen, X. et al. (2013b) Novel human lncRNA-disease association inference based on lncRNA expression profiles. Bioinformatics, 29, 2617 2624.
4. Claesen, M. et al. (2015) A robust ensemble approach to learn from positive and unlabeled data using SVM base models. Neurocomputing, 160, 73 84.
5. Enciso-Mora, V. et al. (2010a) Risk of breast and prostate cancer is not associated with increased homozygosity in outbred populations. Eur. J. Hum. Genet., 18, 909 914.
6. Enciso-Mora, V. et al. (2010b) Mechanisms of endocrine resistance in breast cancer: An overview of the proposed roles of noncoding RNA. Breast Cancer Res., 17, 40.
7. Friedenson, B. et al. (2007) The BRCA1/2 pathway prevents hematologic cancers in addition to breast and ovarian cancers. BMC Cancer, 7, 152 162.
8. Garcia-Closas, M. et al. (2007) Common genetic variation in TP53 and its flanking genes, WDR79 and ATP1B2, and susceptibility to breast cancer. Int. J. Cancer, 121, 2532 2538.
9. Gumireddy, K. et al. (2013) Identification of a long non-coding RNA-Associated RNP complex regulating metastasis at the translational step. EMBO J., 2013, 32, 2672 2684.
10. Huang, J. et al. (2014) Long non-coding RNA UCA1 promotes breast tumor growth by suppression of p27 (Kip1). Cell Death Dis., 5, e1008.
11. Jalali, S. et al. (2015) Computational approaches towards understanding human long non-coding RNA biology. Bioinformatics, 31, 2241 2251.
12. Kü hnle, S. et al. (2013) Role of the ubiquitin ligase E6AP/UBE3A in controlling levels of the synaptic protein Arc. Proc. Natl. Acad. Sci. U. S. A., 110, 8888 8893.
13. Mahmoudi, S. et al. (2011) WRAP53 promotes cancer cell survival and is a potential target for cancer therapy. Cell Death Dis., 2, e114.
14. Mani, A. et al. (2006) E6AP mediates regulated proteasomal degradation of the nuclear receptor coactivator amplified in breast cancer 1 in immortalized cells. Cancer Res., 66, 8680 8686.
15. Mordelet, F. et al. (2014) A bagging SVM to learn from positive and unlabeled examples. Pattern Recognit. Lett., 37, 201 209.
16. Nanchari, S.R. et al. (2015) Rrp1B gene polymorphism (1307T>C) in metastatic progression of breast cancer. Tumour Biol., 36, 615 621.
17. Ning, S.W. et al. (2015) Lnc2Cancer: A manually curated database of experimentally supported lncRNAs associated with various human cancers. Nucleic Acids Res., 44, D980 D985.
18. Ponting, C.P. et al. (2009) Evolution and functions of long noncoding RNAs. Cell, 136, 629 641.
19. Sun, J. et al. (2014) Inferring novel lncRNA-disease associations based on a random walk model of a lncRNA functional similarity network. Mol. Biosyst., 10, 2074 2081.
20. Wapinski, O. and Chang, H.Y. (2011) Long noncoding RNAs and human disease. Trends Cell Biol., 21, 354 361.
21. Yang, X.F. et al. (2013) A network based method for analysis of lncRNAdisease associations and prediction of lncRNAs implicated in diseases. PLoS One, 9, e87797.
22. Zakeri, P. et al. (2014) Protein fold recognition using geometric kernel data fusion. Bioinformatics, 30, 1850 1857.