-
1
-
-
84863718303
-
Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88
-
Larsson, E. et al. Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88. Gut 61, 1124-1131 (2012).
-
(2012)
Gut
, vol.61
, pp. 1124-1131
-
-
Larsson, E.1
-
2
-
-
27644498442
-
A direct role for dual oxidase in Drosophila gut immunity
-
Ha, E.M., Oh, C.T., Bae, Y.S. &Lee, W.J. A direct role for dual oxidase in Drosophila gut immunity. Science 310, 847-850 (2005).
-
(2005)
Science
, vol.310
, pp. 847-850
-
-
Ha, E.M.1
Oh, C.T.2
Bae, Y.S.3
Lee, W.J.4
-
3
-
-
70350439116
-
Ce-Duox1/BLI-3 generates reactive oxygen species as a protective innate immune mechanism in Caenorhabditis elegans
-
Chavez, V., Mohri-Shiomi, A. &Garsin, D.A. Ce-Duox1/BLI-3 generates reactive oxygen species as a protective innate immune mechanism in Caenorhabditis elegans. Infect. Immun. 77, 4983-4989 (2009).
-
(2009)
Infect. Immun.
, vol.77
, pp. 4983-4989
-
-
Chavez, V.1
Mohri-Shiomi, A.2
Garsin, D.A.3
-
4
-
-
33846314338
-
A novel host defense system of airways is defective in cystic fibrosis
-
Moskwa, P. et al. A novel host defense system of airways is defective in cystic fibrosis. Am. J. Respir. Crit. Care Med. 175, 174-183 (2007).
-
(2007)
Am. J. Respir. Crit. Care Med.
, vol.175
, pp. 174-183
-
-
Moskwa, P.1
-
5
-
-
84886780246
-
Dual oxidases control release of hydrogen peroxide by the gastric epithelium to prevent Helicobacter felis infection and inflammation in mice
-
Grasberger, H., El-Zaatari, M., Dang, D.T. &Merchant, J.L. Dual oxidases control release of hydrogen peroxide by the gastric epithelium to prevent Helicobacter felis infection and inflammation in mice. Gastroenterology 145, 1045-1054 (2013).
-
(2013)
Gastroenterology
, vol.145
, pp. 1045-1054
-
-
Grasberger, H.1
El-Zaatari, M.2
Dang, D.T.3
Merchant, J.L.4
-
6
-
-
84952948569
-
Increased expression of duox2 is an epithelial response to mucosal dysbiosis required for immune homeostasis in mouse intestine
-
Grasberger, H. et al. Increased Expression of DUOX2 Is an Epithelial Response to Mucosal Dysbiosis Required for Immune Homeostasis in Mouse Intestine. Gastroenterology 149, 1849-1859 (2015).
-
(2015)
Gastroenterology
, vol.149
, pp. 1849-1859
-
-
Grasberger, H.1
-
7
-
-
85005767611
-
Redox signaling mediated by the gutmicrobiota
-
Jones, R.M. &Neish, A.S. Redox signaling mediated by the gutmicrobiota. Free Radic. Biol. Med. 105, 41-47 (2017).
-
(2017)
Free Radic. Biol. Med.
, vol.105
, pp. 41-47
-
-
Jones, R.M.1
Neish, A.S.2
-
8
-
-
85006494284
-
NADPH oxidase-1 deficiency offers little protection in Salmonella typhimurium-induced typhlitis in mice
-
Chu, F.F., Esworthy, R.S., Doroshow, J.H. &Shen, B. NADPH oxidase-1 deficiency offers little protection in Salmonella typhimurium-induced typhlitis in mice. World J. Gastroenterol. 22, 10158-10165 (2016)
-
(2016)
World J. Gastroenterol.
, vol.22
, pp. 10158-10165
-
-
Chu, F.F.1
Esworthy, R.S.2
Doroshow, J.H.3
Shen, B.4
-
9
-
-
84969551347
-
Defensive mutualism rescues NADPH oxidase inactivation in gut infection
-
Pircalabioru, G. et al. Defensive mutualism rescues NADPH oxidase inactivation in gut infection. Cell Host Microbe 19, 651-663 (2016).
-
(2016)
Cell Host Microbe
, vol.19
, pp. 651-663
-
-
Pircalabioru, G.1
-
10
-
-
84865534083
-
Chronic epithelial NF-kappaB activation accelerates APC loss and intestinal tumor initiation through iNOS up-regulation
-
Shaked, H. et al. Chronic epithelial NF-kappaB activation accelerates APC loss and intestinal tumor initiation through iNOS up-regulation. Proc. Natl Acad. Sci. USA 109, 14007-14012 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 14007-14012
-
-
Shaked, H.1
-
11
-
-
84874662091
-
Biology of nitrogen oxides in the gastrointestinal tract
-
Lundberg, J.O. &Weitzberg, E. Biology of nitrogen oxides in the gastrointestinal tract. Gut 62, 616-629 (2013).
-
(2013)
Gut
, vol.62
, pp. 616-629
-
-
Lundberg, J.O.1
Weitzberg, E.2
-
12
-
-
85012287710
-
Taking up the cudgels for the traditional reactive oxygen and nitrogen species detection assays and their use in the cardiovascular system
-
Daiber, A., Oelze, M., Steven, S., Kroller-Schon, S. &Munzel, T. Taking up the cudgels for the traditional reactive oxygen and nitrogen species detection assays and their use in the cardiovascular system. Redox Biol. 12, 35-49 (2017).
-
(2017)
Redox Biol.
, vol.12
, pp. 35-49
-
-
Daiber, A.1
Oelze, M.2
Steven, S.3
Kroller-Schon, S.4
Munzel, T.5
-
13
-
-
79952855316
-
Depletion of murine intestinal microbiota: Effects on gut mucosa and epithelial gene expression
-
Reikvam,D.H. et al. Depletion of murine intestinal microbiota: effects on gut mucosa and epithelial gene expression. PLoS ONE 6, e17996 (2011).
-
(2011)
PLoS ONE
, vol.6
, pp. e17996
-
-
Reikvam, D.H.1
-
14
-
-
84961999746
-
Heterogeneity of the gut microbiome in mice: Guidelines for optimizing experimental design
-
Laukens, D., Brinkman, B.M., Raes, J., De Vos, M. &Vandenabeele, P. Heterogeneity of the gut microbiome in mice: guidelines for optimizing experimental design. FEMS Microbiol. Rev. 40, 117-132 (2016).
-
(2016)
FEMS Microbiol. Rev.
, vol.40
, pp. 117-132
-
-
Laukens, D.1
Brinkman, B.M.2
Raes, J.3
De Vos, M.4
Vandenabeele, P.5
-
15
-
-
84905484031
-
In vivo imaging of reactive oxygen and nitrogen species in murine colitis
-
Asghar, M.N. et al. In vivo imaging of reactive oxygen and nitrogen species in murine colitis. Inflamm. Bowel Dis. 20, 1435-1447 (2014).
-
(2014)
Inflamm. Bowel Dis.
, vol.20
, pp. 1435-1447
-
-
Asghar, M.N.1
-
16
-
-
84868269158
-
Bioluminescence Imaging of NADPH Oxidase Activity in Different AnimalModels
-
Han, W., Li, H., Segal, B.H. &Blackwell, T.S. Bioluminescence Imaging of NADPH Oxidase Activity in Different AnimalModels. J. Vis. Exp. 68, e3925 (2012).
-
(2012)
J. Vis. Exp.
, vol.68
, pp. e3925
-
-
Han, W.1
Li, H.2
Segal, B.H.3
Blackwell, T.S.4
-
17
-
-
68549128495
-
In vivo imaging of reactive oxygen and nitrogen species in inflammation using the luminescent probe L-012
-
Kielland, A., Blom, T., Nandakumar, K.S., Holmdahl, R., Blomhoff, R. &Carlsen, H. In vivo imaging of reactive oxygen and nitrogen species in inflammation using the luminescent probe L-012. Free Radic. Biol. Med. 47, 760-766 (2009).
-
(2009)
Free Radic. Biol. Med.
, vol.47
, pp. 760-766
-
-
Kielland, A.1
Blom, T.2
Nandakumar, K.S.3
Holmdahl, R.4
Blomhoff, R.5
Carlsen, H.6
-
18
-
-
65349100490
-
Tracking early autoimmune disease by bioluminescent imaging of NF-kappaB activation reveals pathology in multiple organ systems
-
Zangani, M. et al. Tracking early autoimmune disease by bioluminescent imaging of NF-kappaB activation reveals pathology in multiple organ systems. Am. J. Pathol. 174, 1358-1367 (2009).
-
(2009)
Am. J. Pathol.
, vol.174
, pp. 1358-1367
-
-
Zangani, M.1
-
19
-
-
84884169659
-
Peroxynitrite a stealthy biological oxidant
-
Radi, R. Peroxynitrite a stealthy biological oxidant. J. Biol. Chem. 288, 26464-26472 (2013).
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 26464-26472
-
-
Radi, R.1
-
20
-
-
84886048542
-
On the use of L-012, a luminol-based chemiluminescent probe, for detecting superoxide and identifying inhibitors of NADPH oxidase: A reevaluation
-
Zielonka, J., Lambeth, J.D. &Kalyanaraman, B. On the use of L-012, a luminol-based chemiluminescent probe, for detecting superoxide and identifying inhibitors of NADPH oxidase: a reevaluation. Free Radic. Biol. Med. 65, 1310-1314 (2013).
-
(2013)
Free Radic. Biol. Med.
, vol.65
, pp. 1310-1314
-
-
Zielonka, J.1
Lambeth, J.D.2
Kalyanaraman, B.3
-
21
-
-
84955446924
-
A rapid bioluminescence assay for measuring myeloperoxidase activity in human plasma
-
Goiffon, R.J., Martinez, S.C. &Piwnica-Worms, D. A rapid bioluminescence assay for measuring myeloperoxidase activity in human plasma. Nat. Commun. 6, 6271 (2015).
-
(2015)
Nat. Commun.
, vol.6
, pp. 6271
-
-
Goiffon, R.J.1
Martinez, S.C.2
Piwnica-Worms, D.3
-
22
-
-
84888864785
-
Symbiotic lactobacilli stimulate gut epithelial proliferation via Nox-mediated generation of reactive oxygen species
-
Jones, R.M. et al. Symbiotic lactobacilli stimulate gut epithelial proliferation via Nox-mediated generation of reactive oxygen species. EMBO J. 32, 3017-3028 (2013).
-
(2013)
EMBO J.
, vol.32
, pp. 3017-3028
-
-
Jones, R.M.1
-
23
-
-
70349905090
-
Response of gut microbiota to fasting and hibernation in Syrian hamsters
-
Sonoyama, K. et al. Response of gut microbiota to fasting and hibernation in Syrian hamsters. Appl. Environ. Microbiol. 75, 6451-6456 (2009).
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 6451-6456
-
-
Sonoyama, K.1
-
24
-
-
84872045564
-
Mucosal reactive oxygen species decrease virulence by disrupting Campylobacter jejuni phosphotyrosine signaling
-
Corcionivoschi, N. et al. Mucosal reactive oxygen species decrease virulence by disrupting Campylobacter jejuni phosphotyrosine signaling. Cell Host Microbe 12, 47-59 (2012).
-
(2012)
Cell Host Microbe
, vol.12
, pp. 47-59
-
-
Corcionivoschi, N.1
-
25
-
-
84873816901
-
Annexin A1, formyl peptide receptor, and NOX1 orchestrate epithelial repair
-
Leoni, G. et al. Annexin A1, formyl peptide receptor, and NOX1 orchestrate epithelial repair. J. Clin. Investig. 123, 443-454 (2013).
-
(2013)
J. Clin. Investig.
, vol.123
, pp. 443-454
-
-
Leoni, G.1
-
26
-
-
85020412228
-
Antioxidant activity of various oral Lactobacillus strains
-
Chooruk, A., Piwat, S. &Teanpaisan, R. Antioxidant activity of various oral Lactobacillus strains. J. Appl. Microbiol. 123, 271-279 (2017).
-
(2017)
J. Appl. Microbiol.
, vol.123
, pp. 271-279
-
-
Chooruk, A.1
Piwat, S.2
Teanpaisan, R.3
-
27
-
-
2542454740
-
Oxidative stress in Lactococcus lactis
-
Miyoshi, A. et al. Oxidative stress in Lactococcus lactis. Genet. Mol. Res. 2, 348-359 (2003).
-
(2003)
Genet. Mol. Res.
, vol.2
, pp. 348-359
-
-
Miyoshi, A.1
-
28
-
-
33751074136
-
Quantitative PCR assays for mouse enteric flora reveal strain-dependent differences in composition that are influenced by the microenvironment
-
Deloris Alexander, A., Orcutt, R.P., Henry, J.C., Baker, J. Jr., Bissahoyo, A.C. &Threadgill, D.W. Quantitative PCR assays for mouse enteric flora reveal strain-dependent differences in composition that are influenced by the microenvironment. Mamm. Genome 17, 1093-1104 (2006).
-
(2006)
Mamm. Genome
, vol.17
, pp. 1093-1104
-
-
Deloris Alexander, A.1
Orcutt, R.P.2
Henry, J.C.3
Baker, J.4
Bissahoyo, A.C.5
Threadgill, D.W.6
-
29
-
-
84897419613
-
Optimization of murine small intestine leukocyte isolation for global immune phenotype analysis
-
Goodyear, A.W., Kumar, A., Dow, S. &Ryan, E.P. Optimization of murine small intestine leukocyte isolation for global immune phenotype analysis. J. Immunol. Methods 405, 97-108 (2014).
-
(2014)
J. Immunol. Methods
, vol.405
, pp. 97-108
-
-
Goodyear, A.W.1
Kumar, A.2
Dow, S.3
Ryan, E.P.4
-
30
-
-
84938748941
-
Assay for estimating total bacterial load: Relative qPCR normalisation of bacterial load with associated clinical implications
-
Brukner, I., Longtin, Y., Oughton, M., Forgetta, V. &Dascal, A. Assay for estimating total bacterial load: relative qPCR normalisation of bacterial load with associated clinical implications. Diagn. Microbiol. Infect. Dis. 83, 1-6 (2015).
-
(2015)
Diagn. Microbiol. Infect. Dis.
, vol.83
, pp. 1-6
-
-
Brukner, I.1
Longtin, Y.2
Oughton, M.3
Forgetta, V.4
Dascal, A.5
-
31
-
-
85027951890
-
Transition from infant-to adult-like gut microbiota
-
Avershina, E. et al. Transition from infant-to adult-like gut microbiota. Environ. Microbiol. 18, 2226-2236 (2016).
-
(2016)
Environ. Microbiol.
, vol.18
, pp. 2226-2236
-
-
Avershina, E.1
-
32
-
-
16344363305
-
Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction
-
Yu, Y., Lee, C., Kim, J. &Hwang, S. Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction. Biotechnol. Bioeng. 89, 670-679 (2005).
-
(2005)
Biotechnol. Bioeng.
, vol.89
, pp. 670-679
-
-
Yu, Y.1
Lee, C.2
Kim, J.3
Hwang, S.4
-
33
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso, J.G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336 (2010).
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
-
34
-
-
84884904719
-
UPARSE: Highly accurate OTU sequences from microbial amplicon reads
-
Edgar, R.C. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat. Methods 10, 996-998 (2013).
-
(2013)
Nat. Methods
, vol.10
, pp. 996-998
-
-
Edgar, R.C.1
-
35
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar, R.C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460-2461 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
36
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis, T.Z. et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microbiol. 72, 5069-5072 (2006).
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
-
37
-
-
79959383523
-
Metagenomic biomarker discovery and explanation
-
Segata, N. et al. Metagenomic biomarker discovery and explanation. Genome Biol. 12, R60 (2011).
-
(2011)
Genome Biol.
, vol.12
, pp. R60
-
-
Segata, N.1
|