메뉴 건너뛰기




Volumn 6, Issue 6, 2018, Pages 679-691.e4

Dissection of Influenza Infection In Vivo by Single-Cell RNA Sequencing

Author keywords

bystander versus infected cells; immune and non immune cell types; influenza infection in vivo; single cell RNA sequencing

Indexed keywords

TRANSCRIPTOME;

EID: 85047800158     PISSN: 24054712     EISSN: 24054720     Source Type: Journal    
DOI: 10.1016/j.cels.2018.05.008     Document Type: Article
Times cited : (152)

References (33)
  • 3
    • 84879966712 scopus 로고    scopus 로고
    • A systems analysis identifies a feedforward inflammatory circuit leading to lethal influenza infection
    • Brandes, M., Klauschen, F., Kuchen, S., Germain, R.N., A systems analysis identifies a feedforward inflammatory circuit leading to lethal influenza infection. Cell 154 (2013), 197–212.
    • (2013) Cell , vol.154 , pp. 197-212
    • Brandes, M.1    Klauschen, F.2    Kuchen, S.3    Germain, R.N.4
  • 4
    • 84977126865 scopus 로고    scopus 로고
    • Replication-competent influenza A viruses expressing reporter genes
    • Breen, M., Nogales, A., Baker, S., Martínez-Sobrido, L., Replication-competent influenza A viruses expressing reporter genes. Viruses, 8, 2016, 179.
    • (2016) Viruses , vol.8 , pp. 179
    • Breen, M.1    Nogales, A.2    Baker, S.3    Martínez-Sobrido, L.4
  • 7
    • 85043984106 scopus 로고    scopus 로고
    • The use of single-cell RNA-Seq to understand virus–host interactions
    • Cristinelli, S., Ciuffi, A., The use of single-cell RNA-Seq to understand virus–host interactions. Curr. Opin. Virol. 29 (2018), 39–50.
    • (2018) Curr. Opin. Virol. , vol.29 , pp. 39-50
    • Cristinelli, S.1    Ciuffi, A.2
  • 8
    • 84926299054 scopus 로고    scopus 로고
    • A GFP expressing influenza A virus to report in vivo tropism and protection by a matrix protein 2 ectodomain-specific monoclonal antibody
    • De Baets, S., Verhelst, J., Van den Hoecke, S., Smet, A., Schotsaert, M., Job, E.R., Roose, K., Schepens, B., Fiers, W., Saelens, X., A GFP expressing influenza A virus to report in vivo tropism and protection by a matrix protein 2 ectodomain-specific monoclonal antibody. PLoS One, 10, 2015, e0121491.
    • (2015) PLoS One , vol.10 , pp. e0121491
    • De Baets, S.1    Verhelst, J.2    Van den Hoecke, S.3    Smet, A.4    Schotsaert, M.5    Job, E.R.6    Roose, K.7    Schepens, B.8    Fiers, W.9    Saelens, X.10
  • 10
    • 84947782751 scopus 로고    scopus 로고
    • Single-cell analysis and stochastic modelling unveil large cell-to-cell variability in influenza A virus infection
    • Heldt, F.S., Kupke, S.Y., Dorl, S., Reichl, U., Frensing, T., Single-cell analysis and stochastic modelling unveil large cell-to-cell variability in influenza A virus infection. Nat. Commun., 6, 2015, 8938.
    • (2015) Nat. Commun. , vol.6 , pp. 8938
    • Heldt, F.S.1    Kupke, S.Y.2    Dorl, S.3    Reichl, U.4    Frensing, T.5
  • 11
    • 52649097448 scopus 로고    scopus 로고
    • The Immunological Genome Project: networks of gene expression in immune cells
    • Heng, T.S.P., Painter, M.W., Immunological Genome Project Consortium. The Immunological Genome Project: networks of gene expression in immune cells. Nat. Immunol. 9 (2008), 1091–1094.
    • (2008) Nat. Immunol. , vol.9 , pp. 1091-1094
    • Heng, T.S.P.1    Painter, M.W.2
  • 13
    • 84893075305 scopus 로고    scopus 로고
    • Regulation of type I interferon responses
    • Ivashkiv, L.B., Donlin, L.T., Regulation of type I interferon responses. Nat. Rev. Immunol. 14 (2013), 36–49.
    • (2013) Nat. Rev. Immunol. , vol.14 , pp. 36-49
    • Ivashkiv, L.B.1    Donlin, L.T.2
  • 14
    • 84899503850 scopus 로고    scopus 로고
    • Innate immunity to influenza virus infection
    • Iwasaki, A., Pillai, P.S., Innate immunity to influenza virus infection. Nat. Rev. Immunol. 14 (2014), 315–328.
    • (2014) Nat. Rev. Immunol. , vol.14 , pp. 315-328
    • Iwasaki, A.1    Pillai, P.S.2
  • 17
    • 84926519013 scopus 로고    scopus 로고
    • HISAT: a fast spliced aligner with low memory requirements
    • Kim, D., Langmead, B., Salzberg, S.L., HISAT: a fast spliced aligner with low memory requirements. Nat. Methods 12 (2015), 357–360.
    • (2015) Nat. Methods , vol.12 , pp. 357-360
    • Kim, D.1    Langmead, B.2    Salzberg, S.L.3
  • 18
    • 85017514214 scopus 로고    scopus 로고
    • PRDM16 represses the type I interferon response in adipocytes to promote mitochondrial and thermogenic programing
    • Kissig, M., Ishibashi, J., Harms, M.J., Lim, H.-W., Stine, R.R., Won, K.-J., Seale, P., PRDM16 represses the type I interferon response in adipocytes to promote mitochondrial and thermogenic programing. EMBO J. 36 (2017), 1528–1542.
    • (2017) EMBO J. , vol.36 , pp. 1528-1542
    • Kissig, M.1    Ishibashi, J.2    Harms, M.J.3    Lim, H.-W.4    Stine, R.R.5    Won, K.-J.6    Seale, P.7
  • 19
    • 84920724791 scopus 로고    scopus 로고
    • Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment
    • Lavin, Y., Winter, D., Blecher-Gonen, R., David, E., Keren-Shaul, H., Merad, M., Jung, S., Amit, I., Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment. Cell 159 (2014), 1312–1326.
    • (2014) Cell , vol.159 , pp. 1312-1326
    • Lavin, Y.1    Winter, D.2    Blecher-Gonen, R.3    David, E.4    Keren-Shaul, H.5    Merad, M.6    Jung, S.7    Amit, I.8
  • 23
    • 84900413094 scopus 로고    scopus 로고
    • Tissue-specific signals control reversible program of localization and functional polarization of macrophages
    • Okabe, Y., Medzhitov, R., Tissue-specific signals control reversible program of localization and functional polarization of macrophages. Cell 157 (2014), 832–844.
    • (2014) Cell , vol.157 , pp. 832-844
    • Okabe, Y.1    Medzhitov, R.2
  • 25
    • 85043531075 scopus 로고    scopus 로고
    • Extreme heterogeneity of influenza virus infection in single cells
    • Russell, A.B., Trapnell, C., Bloom, J.D., Extreme heterogeneity of influenza virus infection in single cells. Elife, 7, 2018, e32303.
    • (2018) Elife , vol.7 , pp. e32303
    • Russell, A.B.1    Trapnell, C.2    Bloom, J.D.3
  • 30
    • 85045523307 scopus 로고    scopus 로고
    • Single-cell analysis of the impact of host-cell heterogeneity on infection with foot and mouth disease virus
    • Xin, X., Wang, H., Han, L., Wang, M., Fang, H., Hao, Y., Li, J., Zhang, H., Zheng, C., Shen, C., Single-cell analysis of the impact of host-cell heterogeneity on infection with foot and mouth disease virus. J. Virol., 92, 2018, 10.1128/JVI.00179-18.
    • (2018) J. Virol. , vol.92
    • Xin, X.1    Wang, H.2    Han, L.3    Wang, M.4    Fang, H.5    Hao, Y.6    Li, J.7    Zhang, H.8    Zheng, C.9    Shen, C.10
  • 31
    • 84883124285 scopus 로고    scopus 로고
    • Biogenesis, assembly, and export of viral messenger ribonucleoproteins in the influenza A virus infected cell
    • York, A., Fodor, E., Biogenesis, assembly, and export of viral messenger ribonucleoproteins in the influenza A virus infected cell. RNA Biol. 10 (2013), 1274–1282.
    • (2013) RNA Biol. , vol.10 , pp. 1274-1282
    • York, A.1    Fodor, E.2
  • 32
    • 85043513977 scopus 로고    scopus 로고
    • Single-cell transcriptional dynamics of flavivirus infection
    • Zanini, F., Pu, S.-Y., Bekerman, E., Einav, S., Quake, S.R., Single-cell transcriptional dynamics of flavivirus infection. Elife, 7, 2018, e32942.
    • (2018) Elife , vol.7 , pp. e32942
    • Zanini, F.1    Pu, S.-Y.2    Bekerman, E.3    Einav, S.4    Quake, S.R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.