Distinct mineral weathering behaviors of the novel mineral- weathering strains Rhizobium yantingense H66 and Rhizobium etli CFN42

Applied and Environmental Microbiology

Volumn 82, Issue 14, 2016, Pages 4090-4099

  Chen, Wei ^a   Luo, Long ^a   He, Lin Yan ^a   Wang, Qi ^a   Sheng, Xia Fang ^a  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ADSORPTION; ALUMINUM; CELLS; CYTOLOGY; EUTROPHICATION; FELDSPAR; GLUCOSE; METABOLISM; NUTRIENTS; POTASH; SCANNING ELECTRON MICROSCOPY; SILICATE MINERALS; SILICATES; STRAIN; WEATHERING;

GLUCOSE METABOLISM; HIGH GLUCOSE MEDIA; METABOLIC ACTIVITY; MINERAL WEATHERING; NUTRIENT CONCENTRATIONS; POSITIVE CORRELATIONS; REDUNDANCY ANALYSIS; SCANNING ELECTRONS;

MINERALS;

ADSORPTION; CONCENTRATION (COMPOSITION); FELDSPAR; GLUCOSE; MICROBIAL ACTIVITY; MOBILIZATION; NUTRIENT AVAILABILITY; POTASH; RHIZOBACTERIUM; SCANNING ELECTRON MICROSCOPY; SILICATE; WEATHERING;

RHIZOBIUM; RHIZOBIUM ETLI;

CARBOXYLIC ACID; MINERAL; SILICATE;

BACTERIAL LOAD; BACTERIUM ADHERENCE; COMPARATIVE STUDY; ISOLATION AND PURIFICATION; METABOLISM; PHYSIOLOGY; RHIZOBIUM; SCANNING ELECTRON MICROSCOPY;

BACTERIAL ADHESION; BACTERIAL LOAD; CARBOXYLIC ACIDS; MICROSCOPY, ELECTRON, SCANNING; MINERALS; RHIZOBIUM; SILICATES;

EID: 85047288810     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00918-16     Document Type: Article

References (38)

1. White AF, Brantley SL. 1995. Chemical weathering rates of silicate minerals:an overview, p 1-22. In White AF, Brantley SL (ed), Chemical weathering rates of silicate minerals. Reviews in mineralogy. Mineralogical Society of America, Washington, DC.
2. Ehrlich HL. 1998. Geomicrobiology: its significance for geology. Earth-Sci Rev 45:45-60. http://dx.doi.org/10.1016/S0012-8252(98)00034-8
3. Shirokova LS, Bénézeth P, Pokrovsky OS, Gerard E, Ménez B, Alfredsson H. 2012. Effect of the heterotrophic bacterium Pseudomonas reactans on olivine dissolution kinetics and implications for CO2 storage in basalts. Geochim Cosmochim Acta 80:30-50. http://dx.doi.org/10 .1016/j.gca.2011.11.046
4. Schulz S, Brankatschk R, Dümig A, Kögel-Knabner I, Schloter M, Zeyer J. 2013. The role of microorganisms at different stages of ecosystem development for soil formation. Biogeosciences 10:3983-3996. http://dx.doi .org/10.5194/bg-10-3983-2013
5. Miot J, Benzerara K, Kappler A. 2014. Investigating microbe-mineral interactions: recent advances in X-ray and electron microscopy and redox- sensitive methods. Annu Rev Earth Planet Sci 42:271-289. http://dx .doi.org/10.1146/annurev-earth-050212-124110
6. Duff RB, Webley DM, Scott RD. 1963. Solubilization of minerals and related materials by 2-ketogluconic acid-producing bacteria. Soil Sci 95:105-114. http://dx.doi.org/10.1097/00010694-196302000-00004
7. Kalinowski BE, Liermann LJ, Givens S, Brantley SL. 2000. Rates of bacteria-promoted solubilization of Fe from minerals: a review of problems and approaches. Chem Geol 169:357-370. http://dx.doi.org/10.1016 /S0009-2541(00)00214-X
8. Barker WW, Welch SA, Chu S, Banfield JF. 1998. Experimental observations of the effects of bacteria on aluminosilicate weathering. AmMiner 83:1551-1563. http://dx.doi.org/10.2138/am-1998-11-1243
9. Zhao F, Qiu G, Huang Z, He LY, Sheng XF. 2013. Characterization of Rhizobium sp. Q32 isolated from weathered rocks and its role in silicate mineral weathering. Geomicrobiol J 30:616-622.
10. Huang J, Sheng XF, Xi J, He LY, Huang Z, Wang Q, Zhang ZD. 2014. Depth-related changes in community structure of culturable mineral weathering bacteria and in weathering patterns caused by them along two contrasting soil profiles. Appl Environ Microbiol 80:29-42. http://dx.doi .org/10.1128/AEM.02335-13
11. Wightman PG, Fein JB. 2004. The effect of bacterial cell wall adsorption on mineral solubilities. Chem Geol 212:247-254. http://dx.doi.org/10 .1016/j.chemgeo.2004.06.033
12. Kinzler K, Gehrke T, Telegdi J, Sand W. 2003. Bioleaching-a result of interfacial processes caused by extracellular polymeric substances (EPS). Hydrometallurgy 71:83-88. http://dx.doi.org/10.1016/S0304-386X (03)00176-2
13. Ahmed E, Holmström SJM. 2015. Microbe-mineral interactions: the impact of surface attachment on mineral weathering and element selectivity by microorganisms. Chem Geol 403:13-23. http://dx.doi.org/10 .1016/j.chemgeo.2015.03.009
14. Rogers JR, Bennett PC, Choi WJ. 1998. Feldspars as a source of nutrients for microorganisms. Am Miner 83:1532-1540. http://dx.doi.org/10.2138 /am-1998-11-1241
15. Brown GE, Jr, Foster AL, Ostergren JD. 1999. Mineral surfaces and bioavailability of heavy metals: a molecular-scale perspective. Proc Natl Acad Sci U S A 96:3388-3395. http://dx.doi.org/10.1073/pnas.96.7.3388
16. Bennett PC, Rogers JR, Choi WJ, Hiebert FK. 2001. Silicates, silicate weathering, and microbial ecology. Geomicrobiol J 18:3-19. http://dx.doi .org/10.1080/01490450151079734
17. Uroz S, Turpault MP, Van Scholl L, Palin B, Frey-Klett P. 2011. Long term impact of mineral amendment on the distribution of the mineral weathering associated bacterial communities from the beech Scleroderma citrinum ectomycorrhizosphere. Soil Biol Biochem 43:2275-2282. http://dx.doi.org/10.1016/j.soilbio.2011.07.010
18. Uroz S, Calvaruso C, Turpault MP, Frey-Klett P. 2009. Mineral weathering by bacteria: ecology, actors and mechanisms. Trends Microbiol 17:378-387. http://dx.doi.org/10.1016/j.tim.2009.05.004
19. Wang RR, Wang Q, He LY, Qiu G, Sheng XF. 2015. Isolation and the interaction between a mineral-weathering Rhizobium tropici Q34 and silicate minerals. World J Microbiol Biotechnol 31:747-753. http://dx.doi .org/10.1007/s11274-015-1827-0
20. Berge O, Lodhi A, Brandelet G, Santaella C, Roncato MA, Christen R, Heulin T, Achouak W. 2009. Rhizobium alamii sp. nov., an exopolysaccharide- producing species isolated from legume and non-legume rhizospheres. Int J Syst Evol Microbiol 59:367-372. http://dx.doi.org/10.1099/ijs .0.000521-0
21. Zhang XX, Li BM, Wang HS, Sui XH, Ma XT, Hong Q, Jiang RB. 2012. Rhizobium petrolearium sp. nov., isolated from oil-contaminated soil. Int J Syst Evol Microbiol 62:1871-1876. http://dx.doi.org/10.1099/ijs.0 .026880-0
22. Chen W, Sheng XF, He LY, Huang Z. 2015. Rhizobium yantingense sp. nov., a mineral-weathering bacterium. Int J Syst Evol Microbiol 65:412-417. http://dx.doi.org/10.1099/ijs.0.064428-0
23. Sheng XF, Zhao F, He LY, Qiu G, Chen L. 2008. Isolation and characterization of silicate mineral-solubilizing Bacillus globisporus Q12 from the surfaces of weathered feldspar. Can J Microbiol 54:1064-1068. http://dx .doi.org/10.1139/W08-089
24. Wu LL, Jacobson AD, Hausner M. 2008. Characterization of elemental release during microbe-granite interactions at T _ 28°C. Geochim Cosmochim Acta 72:1076 -1095. http://dx.doi.org/10.1016/j.gca.2007 .11.025
25. Karan G, Natarajan KA, Modak JM. 1996. Estimation of mineraladhered biomass of Thiobacillus ferrooxidans by protein assay-some problems and remedies. Hydrometallurgy 42:169-175. http://dx.doi.org /10.1016/0304-386X(95)00080-Z
26. Allen G. 1981. Methods for the detection of peptides, p 139-141. In Work TS, Burdon RH (ed), Laboratory techniques in biochemistry and molecular biology. Elsevier North Holland Biomedical Press, Amsterdam, Netherlands.
27. Hirs CHW. 1976. Detection of peptides by chemical methods. Method Enzymol 11:325-329.
28. Miller GL. 1959. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem 31:426 -429. http://dx.doi.org/10.1021 /ac60147a030
29. Fang LC, Huang QY, Wei X, Liang W, Rong XM, Chen WL, Cai P. 2010. Microcalorimetric and potentiometric titration studies on the adsorption of copper by extracellular polymeric substances (EPS), minerals and their composites. Bioresour Technol 101:5774-5779. http://dx.doi .org/10.1016/j.biortech.2010.02.075
30. Dubois M, Gilles KA, Hamilton J, Rebers PA, Smith F. 1956. Colorimetric method for determination of sugar and relative substances. Anal Chem 28:350-366. http://dx.doi.org/10.1021/ac60111a017
31. Balland C, Poszwa A, Leyval C, Mustin C. 2010. Dissolution rates of phyllosilicates as a function of bacterial metabolic diversity. Geochim Cosmochim Acta 74:5478-5493. http://dx.doi.org/10.1016/j.gca.2010.06.022
32. Wang Q, Cheng C, He LY, Huang Z, Sheng XF. 2014. Characterization of depth-related changes in bacterial communities involved in mineral weathering along a mineral-rich soil profile. Geomicrobiol J 31:431-444.
33. Welch SA, Barker WW, Banfield JF. 1999. Microbial extracellular polysaccharides and plagioclase dissolution. Geochim Cosmochim Acta 63:1405-1419. http://dx.doi.org/10.1016/S0016-7037(99)00031-9
34. Bennett PC, Hiebert FK, Choi WJ. 1996. Microbial colonization and weathering of silicates in a petroleum-contaminated groundwater. Chem Geol 132:45-53. http://dx.doi.org/10.1016/S0009-2541(96)00040-X
35. Roberts JA. 2004. Inhibition and enhancement of microbial surface colonization:the role of silicate composition. Chem Geol 212:313-327. http://dx.doi.org/10.1016/j.chemgeo.2004.08.021
36. Rogers JR, Bennett PC. 2004. Mineral stimulation of subsurface microorganisms:release of limiting nutrients from silicates. Chem Geol 203:91-108. http://dx.doi.org/10.1016/j.chemgeo.2003.09.001
37. Delvasto P, Valverde A, Ballester A, Igual JM, Muñoz JA, González F, Blázquez ML, García C. 2006. Characterization of brushite as a recrystallization product formed during bacterial solubilization of hydroxyapatite in batch cultures. Soil Biol Biochem 38:2645-2654. http://dx.doi .org/10.1016/j.soilbio.2006.03.020
38. Dopson M, Lovgren L, Bostrom D. 2009. Silicate mineral dissolution in the presence of acidophilic microorganisms: implications for heap bioleaching. Hydrometallurgy 96:288 -293. http://dx.doi.org/10.1016/j .hydromet.2008.11.004