Characterization of Rhizobium sp. Q32 Isolated from Weathered Rocks and its Role in Silicate Mineral Weathering

Geomicrobiology Journal

Volumn 30, Issue 7, 2013, Pages 616-622

  Zhao, Fei ^a   Qiu, Gang ^a   Huang, Zhi ^a   He, Linyan ^a   Sheng, Xiafang ^a  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

Author keywords

biotite; characterization; feldspar; mineral weathering; Rhizobium sp.

Indexed keywords

BIOTITE; DISSOLUTION; FELDSPAR; PH; PHYSIOLOGY; POLYSACCHARIDE; POTASSIC ROCK; RHIZOBACTERIUM; RNA; SIDEROPHORE; SILICATE MINERAL; TRACHYTE; WEATHERING;

BACTERIA (MICROORGANISMS); RHIZOBIUM; RHIZOBIUM SP.;

EID: 84878431018     PISSN: 01490451     EISSN: 15210529     Source Type: Journal    
DOI: 10.1080/01490451.2012.746406     Document Type: Article

References (33)

1. Aleem, A, Isar, J and Malik, A. 2003. Impact of long-term application of industrial wastewater on the emergence of resistance traits in Azotobacter chroococcum isolated from rhizosphere soil. Bioresource Technol, 86: 7 - 13.
2. Balogh-Brunstad, Z, Keller, C K, Dickinson, J T, Stevens, F, Li, C Y and Bormann, B T. 2008. Biotite weathering and nutrient uptake by ectomycorrhizal fungus, Suillus tomentosus, in liquid-culture experiments. Geochim Cosmochim Acta, 72: 2601 - 2618.
3. Barker, W W, Welch, S A, Chu, S and Banfield, J F. 1998. Experimental observations of the effects of bacteria on aluminosilicate weathering. Am Mineral, 83: 1551 - 1563.
4. Bennett, P C, Hiebert, F K and Choi, W J. 1996. Microbial colonization and weathering of silicates in a petroleum-contaminated groundwater. Chem Geol, 132: 45 - 53.
5. Bennett, P C, Rogers, J R, Hiebert, F K and Choi, W J. 2001. Silicates, silicate weathering, and microbial ecology. Geomicrobiol J, 18: 3 - 19.
6. Benzerara, K, Barakat, M, Menguy, N, Guyot, F, De Luca, G and Audrain, C. 2004. Experimental colonization and alteration of orthopyroxene by the pleomorphic bacteria Ramlibacter tataouinensis. Geomicrobiol J, 21: 341 - 349.
7. Bozzola, J J and Russell, L D. 1992. Electron Microscopy: Principles and Techniques for Biologists, 2nd edition, Sudbury, MA: John and Bartlett Publishers.
8. Buss, H L, Lüttge, A and Brantley, S L. 2007. Etch pit formation on iron silicate surfaces during siderophore-promoted dissolution. Chem Geol, 240: 326 - 342.
9. Corzo, J, León-Barrios, M, Hernando-Rico, V and Gutierrez-Navarro, A M. 1994. Precipitation of metallic cations by the acidic exopolysaccharides from Bradyrhizobium japonicum and Bradyrhizobium (Chamaecytisus) strain BGA-1. Appl Environ Microbiol, 60: 4531 - 4536.
10. Daughney, C J, Rioux, J-P, Fortin, D and Pichler, T. 2004. Laboratory investigation of the role of bacteria in the weathering of basalt near deep sea hydrothermal vents. Geomicrobiol J, 21: 21 - 31.
11. Delvasto, P, Valverde, A, Ballester, A, Igual, J M, Muñoz, J A, González, F, Blázquez, M L and García, C. 2006. Characterization of brushite as a re-crystallization product formed during bacterial solubilization of hydroxyapatite in batch cultures. Soil Bio Biochem, 38: 2645 - 2654.
12. Dong, X Z and Cai, M Y. 2001. Manual of Determinative Bacteriology, Beijing: Science Press.
13. Dopson, M, Lovgren, L and Bostrom, D. 2009. Silicate mineral dissolution in the presence of acidophilic microorganisms: Implications for heap bioleaching. Hydrometallurgy, 96: 288 - 293.
14. Ehrlich, HL. 1998. Geomicrobiology: Its significance for geology. Earth Sci Rev, 45: 45 - 60.
15. Gleeson, D B, Kennedy, N M, Clipson, N, Melville, K, Gadd, G M and McDermott, F P. 2006. Characterization of bacterial community structure on a weathered pegmatitic granite. Microb Ecol, 51: 526 - 534.
16. Hutchens, E, Valsami-Jones, E, McEldowney, S, Gaze, W and McLean, J. 2003. The role of heterotrophic bacteria in feldspar dissolution- an experimental approach. Mineral Mag, 67: 1157 - 1170.
17. Lane, DJ. 1991. " 16S/23S rRNA sequencing ". Edited by: Stackenbrandt, E and Goodfellow, M. 115 - 175. New York: John Wiley and Sons. Nucleic Acid Techniques in Bacterial Systematics
18. Lee, J U and Fein, J B. 2000. Experimental study of the effects of Bacillus subtilis on gibbsite dissolution rates under near-neutral pH and nutrient-poor conditions. Chem Geol, 166: 193 - 202.
19. Liu, D F, Lian, B and Dong, H L. 2012. Isolation of Paenibacillus sp. and assessment of its potential for enhancing mineral weathering. Geomicrobiol J, 29: 413 - 421.
20. Sambrook, J and Russell, D. 2001. Molecular Cloning: A Laboratory Manual, New York: CSHL Press.
21. Santelli, C M, Edgcomb, V P, Bach, W and Edwards, K J. 2009. The diversity and abundance of bacteria inhabiting seafloor lavas positively correlate with rock alteration. Environ Microbiol, 11: 86 - 98.
22. Santelli, C M, Welch, S A, Westrich, H R and Banfield, J F. 2001. The effect of Fe-oxidizing bacteria on Fe-silicate mineral dissolution. Chem Geol, 180: 99 - 115.
23. Schwyn, B and Neilands, J B. 1987. Universal chemical assay for the detection and determination of siderophores. Anal Biochem, 160: 47 - 56.
24. Sheng, X F, Zhao, F, He, L Y, Qiu, G and Chen, L. 2008. Isolation and characterization of silicate mineral-solubilizing Bacillus globisporus Q12 from the surfaces of weathered feldspar. Can J Microbiol, 54: 1064 - 1068.
25. Song, W, Ogawa, N, Oguchi, C T, Hatta, T and Matsukura, Y. 2007. Effect of Bacillus subtilis on granite weathering: A laboratory experiment. Catena, 70: 275 - 281.
26. Summers, A O and Silver, S. 1972. Mercury resistance in a plasmid bearing strains of Escherichia coli. J Bacteriol, 112: 1228 - 1236.
27. Ullman, W J, Kirchman, D L, Welch, S A and Vandevivere, P. 1996. Laboratory evidence for microbially mediated silicate mineral dissolution in nature. Chem Geol, 132: 11 - 17.
28. Uroz, S, Calvaruso, C, Turpault, M P, Pierrat, J C, Mustin, C and Frey-Klett, P. 2007. Effect of the mycorrhizosphere on the genotypic and metabolic diversity of the bacterial communities involved in mineral weathering in a forest soil. Appl Environ Microbiol, 73: 3019 - 3027.
29. Uroz, S, Oger, P, Lepleux, C, Collignon, C, Frey-Klett, P and Turpault, M P. 2011. Bacterial weathering and its contribution to nutrient cycling in temperate forest ecosystems. Res Microbiol, 162: 820 - 831.
30. Van Thienen, P, Benzerara, K, Breuer, D, Gillmann, C, Labrosse, S, Lognonné, P and Spohn, T. 2007. Water, life, and planetary geodynamical evolution. Space Sci Rev, 129: 167 - 203.
31. Welch, S A, Barker, W W and Banfield, J F. 1999. Microbial extracellular polysaccharides and plagioclase dissolution. Geochim Cosmochim Acta, 63: 1405 - 1419.
32. Welch, S A and Ullman, W J. 1999. The effect of microbial glucose metabolism on bytownite feldspar dissolution rates between 5°C and 35°C. Geochim Cosmochim Acta, 63: 3247 - 3259.
33. White, A F and Brantley, S L. 1995. " Chemical weathering rates of silicate minerals: an overview ". In Chemical Weathering Rates of Silicate Minerals. Reviews in Mineralogy, Edited by: White, A F and Brantley, S L. 1 - 22. Washington, DC: Mineralogical Society of America.