Phylogenetic placement of exact amplicon sequences improves associations with clinical information

mSystems

Volumn 3, Issue 3, 2018, Pages

  Janssen, Stefan ^a   McDonald, Daniel ^a   Gonzalez, Antonio ^a   Navas Molina, Jose A ^b   Jiang, Lingjing ^d   Xu, Zhenjiang Zech ^a   Winker, Kevin ^c   Kado, Deborah M ^d   Orwoll, Eric ^e   Manary, Mark ^f   Mirarab, Siavash ^g,h   Knight, Rob ^a,b,g  

^a UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF ALASKA MUSEUM   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e OREGON HEALTH AND SCIENCE UNIVERSITY   (United States)

^f WASHINGTON UNIVERSITY   (United States)

^g UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

^h UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Amplicon sequencing; Microbial community analysis; Phylogenetic placement; SEPP

Indexed keywords

AGED; AMPLICON; ARTICLE; BENCHMARKING; CHILD; CONTROLLED STUDY; GENE SEQUENCE; HUMAN; MALE; MEDICAL INFORMATION; METAGENOMICS; METHANOBREVIBACTER; MICROBIOME; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL;

EID: 85046907278     PISSN: None     EISSN: 23795077     Source Type: Journal    
DOI: 10.1128/mSystems.00021-18     Document Type: Article

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