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Volumn 2017, Issue 126, 2017, Pages

Purification of viral DNA for the identification of associated viral and cellular proteins

Author keywords

Accelerated native iPOND (aniPOND); Click chemistry; DNA isolation; DNA replication; Herpes simplex virus (HSV); Immunology; Isolation of nuclei; Isolation of proteins on nascent DNA (iPOND); Issue 126; Mass spectrometry; Microbiology; Molecular biology; Viral genome; Virology

Indexed keywords

VIRAL PROTEIN; VIRUS DNA;

EID: 85046872534     PISSN: 1940087X     EISSN: None     Source Type: Journal    
DOI: 10.3791/56374     Document Type: Article
Times cited : (12)

References (30)
  • 2
    • 84931004252 scopus 로고    scopus 로고
    • Investigating the biology of alpha herpesviruses with MS-based proteomics
    • Engel, E. A., Song, R., Koyuncu, O. O., & Enquist, L. W. Investigating the biology of alpha herpesviruses with MS-based proteomics. Proteomics. 15, 1943-1956 (2015).
    • (2015) Proteomics , vol.15 , pp. 1943-1956
    • Engel, E.A.1    Song, R.2    Koyuncu, O.O.3    Enquist, L.W.4
  • 3
    • 84885393420 scopus 로고    scopus 로고
    • Temporal association of herpes simplex virus ICP4 with cellular complexes functioning at multiple steps in PolII transcription
    • Wagner, L. M., & DeLuca, N. A. Temporal association of herpes simplex virus ICP4 with cellular complexes functioning at multiple steps in PolII transcription. PloS One. 8, e78242 (2013).
    • (2013) Plos One , vol.8
    • Wagner, L.M.1    Deluca, N.A.2
  • 4
    • 2442653990 scopus 로고    scopus 로고
    • Proteomics of herpes simplex virus replication compartments: Association of cellular DNA replication, repair, recombination, and chromatin remodeling proteins with ICP8
    • Taylor, T. J., & Knipe, D. M. Proteomics of herpes simplex virus replication compartments: association of cellular DNA replication, repair, recombination, and chromatin remodeling proteins with ICP8. J Virol. 78, 5856-5866 (2004).
    • (2004) J Virol , vol.78 , pp. 5856-5866
    • Taylor, T.J.1    Knipe, D.M.2
  • 5
    • 9644289432 scopus 로고    scopus 로고
    • Proteomics of herpes simplex virus infected cell protein 27: Association with translation initiation factors
    • Fontaine-Rodriguez, E. C., Taylor, T. J., Olesky, M., & Knipe, D. M. Proteomics of herpes simplex virus infected cell protein 27: association with translation initiation factors. Virology. 330, 487-492 (2004).
    • (2004) Virology , vol.330 , pp. 487-492
    • Fontaine-Rodriguez, E.C.1    Taylor, T.J.2    Olesky, M.3    Knipe, D.M.4
  • 6
    • 85017004540 scopus 로고    scopus 로고
    • The Impact of Mass Spectrometry-Based Proteomics on Fundamental Discoveries in Virology
    • Greco, T. M., Diner, B. A., & Cristea, I. M. The Impact of Mass Spectrometry-Based Proteomics on Fundamental Discoveries in Virology. Annu Rev Virol . 1, 581-604 (2014).
    • (2014) Annu Rev Virol , vol.1 , pp. 581-604
    • Greco, T.M.1    Diner, B.A.2    Cristea, I.M.3
  • 7
    • 84919429677 scopus 로고    scopus 로고
    • Identification of TRIM27 as a novel degradation target of herpes simplex virus 1 ICP0
    • Conwell, S. E., White, A. E., Harper, J. W., & Knipe, D. M. Identification of TRIM27 as a novel degradation target of herpes simplex virus 1 ICP0. J Virol. 89, 220-229 (2015).
    • (2015) J Virol , vol.89 , pp. 220-229
    • Conwell, S.E.1    White, A.E.2    Harper, J.W.3    Knipe, D.M.4
  • 8
    • 84930971966 scopus 로고    scopus 로고
    • Proteomic analysis of the herpes simplex virus 1 virion protein 16 transactivator protein in infected cells
    • Suk, H., & Knipe, D. M. Proteomic analysis of the herpes simplex virus 1 virion protein 16 transactivator protein in infected cells. Proteomics. 15, 1957-1967 (2015).
    • (2015) Proteomics , vol.15 , pp. 1957-1967
    • Suk, H.1    Knipe, D.M.2
  • 9
    • 78649441078 scopus 로고    scopus 로고
    • Physical interaction between the herpes simplex virus type 1 exonuclease, UL12, and the DNA double-strand break-sensing MRN complex
    • Balasubramanian, N., Bai, P., Buchek, G., Korza, G., & Weller, S. K. Physical interaction between the herpes simplex virus type 1 exonuclease, UL12, and the DNA double-strand break-sensing MRN complex. J Virol . 84, 12504-12514 (2010).
    • (2010) J Virol , vol.84 , pp. 12504-12514
    • Balasubramanian, N.1    Bai, P.2    Buchek, G.3    Korza, G.4    Weller, S.K.5
  • 10
    • 39749144518 scopus 로고    scopus 로고
    • Binding of ICP4, TATA-binding protein, and RNA polymerase II to herpes simplex virus type 1 immediate-early, early, and late promoters in virus-infected cells
    • Sampath, P., & Deluca, N. A. Binding of ICP4, TATA-binding protein, and RNA polymerase II to herpes simplex virus type 1 immediate-early, early, and late promoters in virus-infected cells. J Virol . 82, 2339-2349 (2008).
    • (2008) J Virol , vol.82 , pp. 2339-2349
    • Sampath, P.1    Deluca, N.A.2
  • 11
    • 33144473613 scopus 로고    scopus 로고
    • A chromatin insulator-like element in the herpes simplex virus type 1 latency-associated transcript region binds CCCTC-binding factor and displays enhancer-blocking and silencing activities
    • Amelio, A. L., McAnany, P. K., & Bloom, D. C. A chromatin insulator-like element in the herpes simplex virus type 1 latency-associated transcript region binds CCCTC-binding factor and displays enhancer-blocking and silencing activities. J Virol . 80, 2358-2368 (2006).
    • (2006) J Virol , vol.80 , pp. 2358-2368
    • Amelio, A.L.1    McAnany, P.K.2    Bloom, D.C.3
  • 12
    • 57349146688 scopus 로고    scopus 로고
    • Herpes simplex virus ICP0 promotes both histone removal and acetylation on viral DNA during lytic infection
    • Cliffe, A. R., & Knipe, D. M. Herpes simplex virus ICP0 promotes both histone removal and acetylation on viral DNA during lytic infection. J Virol. 82, 12030-12038 (2008).
    • (2008) J Virol , vol.82 , pp. 12030-12038
    • Cliffe, A.R.1    Knipe, D.M.2
  • 13
    • 4444298521 scopus 로고    scopus 로고
    • VP16-dependent association of chromatin-modifying coactivators and underrepresentation of histones at immediate-early gene promoters during herpes simplex virus infection
    • Herrera, F. J., & Triezenberg, S. J. VP16-dependent association of chromatin-modifying coactivators and underrepresentation of histones at immediate-early gene promoters during herpes simplex virus infection. J Virol. 78, 9689-9696 (2004).
    • (2004) J Virol , vol.78 , pp. 9689-9696
    • Herrera, F.J.1    Triezenberg, S.J.2
  • 14
    • 4444250828 scopus 로고    scopus 로고
    • During lytic infection herpes simplex virus type 1 is associated with histones bearing modifications that correlate with active transcription
    • Kent, J. R. et al. During lytic infection herpes simplex virus type 1 is associated with histones bearing modifications that correlate with active transcription. J Virol . 78, 10178-10186 (2004).
    • (2004) J Virol , vol.78 , pp. 10178-10186
    • Kent, J.R.1
  • 15
    • 41149097014 scopus 로고    scopus 로고
    • Temporal association of the herpes simplex virus genome with histone proteins during a lytic infection
    • Oh, J., & Fraser, N. W. Temporal association of the herpes simplex virus genome with histone proteins during a lytic infection. J Virol. 82, 3530-3537 (2008).
    • (2008) J Virol , vol.82 , pp. 3530-3537
    • Oh, J.1    Fraser, N.W.2
  • 16
    • 84866174976 scopus 로고    scopus 로고
    • HSV-1 genome subnuclear positioning and associations with host-cell PML-NBs and centromeres regulate LAT locus transcription during latency in neurons
    • Catez, F. et al. HSV-1 genome subnuclear positioning and associations with host-cell PML-NBs and centromeres regulate LAT locus transcription during latency in neurons. PLoS Pathog. 8, e1002852 (2012).
    • (2012) Plos Pathog , vol.8
    • Catez, F.1
  • 17
    • 35148893559 scopus 로고    scopus 로고
    • Herpes simplex virus type 1 genomes are associated with ND10 nuclear substructures in quiescently infected human fibroblasts
    • Everett, R. D., Murray, J., Orr, A., & Preston, C. M. Herpes simplex virus type 1 genomes are associated with ND10 nuclear substructures in quiescently infected human fibroblasts. J Virol. 81, 10991-11004 (2007).
    • (2007) J Virol , vol.81 , pp. 10991-11004
    • Everett, R.D.1    Murray, J.2    Orr, A.3    Preston, C.M.4
  • 18
    • 0038709532 scopus 로고    scopus 로고
    • Determination of minimum herpes simplex virus type 1 components necessary to localize transcriptionally active DNA to ND10
    • Tang, Q. et al. Determination of minimum herpes simplex virus type 1 components necessary to localize transcriptionally active DNA to ND10. J Virol . 77, 5821-5828 (2003).
    • (2003) J Virol , vol.77 , pp. 5821-5828
    • Tang, Q.1
  • 19
    • 0029838230 scopus 로고    scopus 로고
    • The periphery of nuclear domain 10 (ND10) as site of DNA virus deposition
    • Ishov, A. M., & Maul, G. G. The periphery of nuclear domain 10 (ND10) as site of DNA virus deposition. J Cell Biol. 134, 815-826 (1996).
    • (1996) J Cell Biol , vol.134 , pp. 815-826
    • Ishov, A.M.1    Maul, G.G.2
  • 20
    • 84989836608 scopus 로고    scopus 로고
    • Latency Entry of Herpes Simplex Virus 1 Is Determined by the Interaction of Its Genome with the Nuclear Environment
    • Maroui, M. A. et al. Latency Entry of Herpes Simplex Virus 1 Is Determined by the Interaction of Its Genome with the Nuclear Environment. PLoS Pathog. 12, e1005834 (2016).
    • (2016) Plos Pathog , vol.12
    • Maroui, M.A.1
  • 21
    • 84861741887 scopus 로고    scopus 로고
    • Monitoring the spatiotemporal dynamics of proteins at replication forks and in assembled chromatin using isolation of proteins on nascent DNA
    • Sirbu, B. M., Couch, F. B., & Cortez, D. Monitoring the spatiotemporal dynamics of proteins at replication forks and in assembled chromatin using isolation of proteins on nascent DNA. Nat Protoc . 7, 594-605 (2012).
    • (2012) Nat Protoc , vol.7 , pp. 594-605
    • Sirbu, B.M.1    Couch, F.B.2    Cortez, D.3
  • 22
    • 84885454866 scopus 로고    scopus 로고
    • A rapid and efficient method to purify proteins at replication forks under native conditions
    • Leung, K. H., Abou El Hassan, M., & Bremner, R. A rapid and efficient method to purify proteins at replication forks under native conditions. BioTechniques. 55, 204-206 (2013).
    • (2013) Biotechniques , vol.55 , pp. 204-206
    • Leung, K.H.1    Abou El Hassan, M.2    Bremner, R.3
  • 23
    • 0344995285 scopus 로고    scopus 로고
    • Perturbation of cell cycle progression and cellular gene expression as a function of herpes simplex virus ICP0
    • Hobbs, W. E., 2nd & DeLuca, N. A. Perturbation of cell cycle progression and cellular gene expression as a function of herpes simplex virus ICP0. J Virol . 73, 8245-8255 (1999).
    • (1999) J Virol , vol.73 , pp. 8245-8255
    • Hobbs, W.E.1    Deluca, N.A.2
  • 24
    • 0032863957 scopus 로고    scopus 로고
    • Herpes simplex virus type 1 immediate-early protein Vmw110 inhibits progression of cells through mitosis and from G(1) into S phase of the cell cycle
    • Lomonte, P., & Everett, R. D. Herpes simplex virus type 1 immediate-early protein Vmw110 inhibits progression of cells through mitosis and from G(1) into S phase of the cell cycle. J Virol. 73, 9456-9467 (1999).
    • (1999) J Virol , vol.73 , pp. 9456-9467
    • Lomonte, P.1    Everett, R.D.2
  • 25
    • 84930346957 scopus 로고    scopus 로고
    • Selective recruitment of nuclear factors to productively replicating herpes simplex virus genomes
    • Dembowski, J. A., & DeLuca, N. A. Selective recruitment of nuclear factors to productively replicating herpes simplex virus genomes. PLoS Pathog. 11, e1004939 (2015).
    • (2015) Plos Pathog , vol.11
    • Dembowski, J.A.1    Deluca, N.A.2
  • 26
    • 85011005436 scopus 로고    scopus 로고
    • Replication-Coupled Recruitment of Viral and Cellular Factors to Herpes Simplex Virus Type 1 Replication Forks for the Maintenance and Expression of Viral Genomes
    • Dembowski, J. A., Dremel, S. E., & DeLuca, N. A. Replication-Coupled Recruitment of Viral and Cellular Factors to Herpes Simplex Virus Type 1 Replication Forks for the Maintenance and Expression of Viral Genomes. PLoS Pathog. 13, e1006166 (2017).
    • (2017) Plos Pathog , vol.13
    • Dembowski, J.A.1    Dremel, S.E.2    Deluca, N.A.3
  • 27
    • 0030462573 scopus 로고    scopus 로고
    • The dUTPases from herpes simplex virus type 1 and mouse mammary tumour virus are less specific than the Escherichia coli enzyme
    • Bjornberg, O., & Nyman, P. O. The dUTPases from herpes simplex virus type 1 and mouse mammary tumour virus are less specific than the Escherichia coli enzyme. J Gen Virol. 77 ( Pt 12), 3107-3111 (1996).
    • (1996) J Gen Virol , vol.77 , Issue.12 , pp. 3107-3111
    • Bjornberg, O.1    Nyman, P.O.2
  • 28
    • 0020837254 scopus 로고
    • DNA-and protein-scission activities of ascorbate in the presence of copper ion and a copper-peptide complex
    • Chiou, S. H. DNA-and protein-scission activities of ascorbate in the presence of copper ion and a copper-peptide complex. J Biochem . 94, 1259-1267 (1983).
    • (1983) J Biochem , vol.94 , pp. 1259-1267
    • Chiou, S.H.1
  • 29
    • 80455129305 scopus 로고    scopus 로고
    • Cellular consequences of copper complexes used to catalyze bioorthogonal click reactions
    • Kennedy, D. C. et al. Cellular consequences of copper complexes used to catalyze bioorthogonal click reactions. J Am Chem Soc . 133, 17993-18001 (2011).
    • (2011) J am Chem Soc , vol.133 , pp. 17993-18001
    • Kennedy, D.C.1
  • 30
    • 0034666108 scopus 로고    scopus 로고
    • STRING: A web-server to retrieve and display the repeatedly occurring neighbourhood of a gene
    • Snel, B., Lehmann, G., Bork, P., & Huynen, M. A. STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene. Nucleic Acids Res . 28, 3442-3444 (2000).
    • (2000) Nucleic Acids Res , vol.28 , pp. 3442-3444
    • Snel, B.1    Lehmann, G.2    Bork, P.3    Huynen, M.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.