-
1
-
-
0027096070
-
Proposal of Burkholderia gen. Nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov
-
Yabuuchi E, Kosako Y, Oyaizu H, Yano I, Hotta H et al. Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. Microbiol Immunol 1992;36:1251–1275.
-
(1992)
Microbiol Immunol
, vol.36
, pp. 1251-1275
-
-
Yabuuchi, E.1
Kosako, Y.2
Oyaizu, H.3
Yano, I.4
Hotta, H.5
-
3
-
-
84917677922
-
Molecular signatures and phylogenomic analysis of the genus Burkholderia: Proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species
-
Sawana A, Adeolu M, Gupta RS. Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species. Front Genet 2014;5:429.
-
(2014)
Front Genet
, vol.5
, pp. 429
-
-
Sawana, A.1
Adeolu, M.2
Gupta, R.S.3
-
4
-
-
84988346547
-
Transfer of eleven species of the genus Burkholderia to the genus Paraburkholderia and proposal of Caballeronia gen. Nov. to accommodate twelve species of the genera Burkholderia and Paraburkholderia
-
Dobritsa AP, Samadpour M. Transfer of eleven species of the genus Burkholderia to the genus Paraburkholderia and proposal of Caballeronia gen. nov. to accommodate twelve species of the genera Burkholderia and Paraburkholderia. Int J Syst Evol Microbiol 2016;66:2836–2846.
-
(2016)
Int J Syst Evol Microbiol
, vol.66
, pp. 2836-2846
-
-
Dobritsa, A.P.1
Samadpour, M.2
-
5
-
-
84994493527
-
Paraburkholderia caffeinilytica sp. Nov., isolated from the soil of a tea plantation
-
Gao Z, Yuan Y, Xu L, Liu R, Chen M et al. Paraburkholderia caffeinilytica sp. nov., isolated from the soil of a tea plantation. Int J Syst Evol Microbiol 2016;66:4185–4190.
-
(2016)
Int J Syst Evol Microbiol
, vol.66
, pp. 4185-4190
-
-
Gao, Z.1
Yuan, Y.2
Xu, L.3
Liu, R.4
Chen, M.5
-
6
-
-
84902681498
-
Burkholderia cordobensis sp. Nov., from agricultural soils
-
Draghi WO, Peeters C, Cnockaert M, Snauwaert C, Wall LG et al. Burkholderia cordobensis sp. nov., from agricultural soils. Int J Syst Evol Microbiol 2014;64:2003–2008.
-
(2014)
Int J Syst Evol Microbiol
, vol.64
, pp. 2003-2008
-
-
Draghi, W.O.1
Peeters, C.2
Cnockaert, M.3
Snauwaert, C.4
Wall, L.G.5
-
7
-
-
84925537748
-
Burkholderia ginsengiterrae sp. Nov. and Burkholderia panaciterrae sp. nov., antagonistic bacteria against root rot pathogen Cylindrocarpon destructans, isolated from ginseng soil
-
Farh MA, Kim YJ, van An H, Sukweenadhi J, Singh P et al. Burkholderia ginsengiterrae sp. nov. and Burkholderia panaciterrae sp. nov., antagonistic bacteria against root rot pathogen Cylindrocarpon destructans, isolated from ginseng soil. Arch Microbiol 2015; 197:439–447.
-
(2015)
Arch Microbiol
, vol.197
, pp. 439-447
-
-
Farh, M.A.1
Kim, Y.J.2
Van An, H.3
Sukweenadhi, J.4
Singh, P.5
-
8
-
-
84925301742
-
Burkholderia megalochromosomata sp. Nov., isolated from grassland soil
-
Baek I, Seo B, Lee I, Lee K, Park SC et al. Burkholderia megalochromosomata sp. nov., isolated from grassland soil. Int J Syst Evol Microbiol 2015;65:959–964.
-
(2015)
Int J Syst Evol Microbiol
, vol.65
, pp. 959-964
-
-
Baek, I.1
Seo, B.2
Lee, I.3
Lee, K.4
Park, S.C.5
-
9
-
-
84927171941
-
Burkholderia monticola sp. Nov., isolated from mountain soil
-
Baek I, Seo B, Lee I, Yi H, Chun J. Burkholderia monticola sp. nov., isolated from mountain soil. Int J Syst Evol Microbiol 2015;65:504-509.
-
(2015)
Int J Syst Evol Microbiol
, vol.65
, pp. 504-509
-
-
Baek, I.1
Seo, B.2
Lee, I.3
Yi, H.4
Chun, J.5
-
10
-
-
84943517744
-
Burkholderia humisilvae sp. Nov., Burkholderia solisilvae sp. nov. and Burkholderia rhizosphaerae sp. nov., isolated from forest soil and rhizosphere soil
-
Lee JC, Whang KS. Burkholderia humisilvae sp. nov., Burkholderia solisilvae sp. nov. and Burkholderia rhizosphaerae sp. nov., isolated from forest soil and rhizosphere soil. Int J Syst Evol Microbiol 2015;65:2986–2992.
-
(2015)
Int J Syst Evol Microbiol
, vol.65
, pp. 2986-2992
-
-
Lee, J.C.1
Whang, K.S.2
-
11
-
-
84889605860
-
Burkholderia humi sp. Nov., Burkholderia choica sp. nov., Burkholderia telluris sp. nov., Burkholderia terrestris sp. nov. and Burkholderia udeis sp. nov.: Burkholderia glathei-like bacteria from soil and rhizosphere soil
-
Vandamme P, de Brandt E, Houf K, Salles JF, Dirk van Elsas J et al. Burkholderia humi sp. nov., Burkholderia choica sp. nov., Burkholderia telluris sp. nov., Burkholderia terrestris sp. nov. and Burkholderia udeis sp. nov.: Burkholderia glathei-like bacteria from soil and rhizosphere soil. Int J Syst Evol Microbiol 2013;63:4707–4718.
-
(2013)
Int J Syst Evol Microbiol
, vol.63
, pp. 4707-4718
-
-
Vandamme, P.1
De Brandt, E.2
Houf, K.3
Salles, J.F.4
Dirk Van Elsas, J.5
-
12
-
-
0031775874
-
Burkholderia graminis sp. Nov., a rhizospheric Burkholderia species, and reassessment of [Pseudomonas] phenazinium, [Pseudomonas] pyrrocinia and [Pseudomonas] glathei as Burkholderia
-
Viallard V, Poirier I, Cournoyer B, Haurat J, Wiebkin S et al. Burkholderia graminis sp. nov., a rhizospheric Burkholderia species, and reassessment of [Pseudomonas] phenazinium, [Pseudomonas] pyrrocinia and [Pseudomonas] glathei as Burkholderia. Int J Syst Bacteriol 1998;48:549–563.
-
(1998)
Int J Syst Bacteriol
, vol.48
, pp. 549-563
-
-
Viallard, V.1
Poirier, I.2
Cournoyer, B.3
Haurat, J.4
Wiebkin, S.5
-
13
-
-
21144436286
-
Burkholderia phytofirmans sp. Nov., a novel plant-associated bacterium with plant-beneficial properties
-
Sessitsch A, Coenye T, Sturz AV, Vandamme P, Barka EA et al. Burkholderia phytofirmans sp. nov., a novel plant-associated bacterium with plant-beneficial properties. Int J Syst Evol Microbiol 2005;55:1187–1192.
-
(2005)
Int J Syst Evol Microbiol
, vol.55
, pp. 1187-1192
-
-
Sessitsch, A.1
Coenye, T.2
Sturz, A.V.3
Vandamme, P.4
Barka, E.A.5
-
14
-
-
84955468687
-
Burkholderia dipogonis sp. Nov., isolated from root nodules of Dipogon lignosus in New Zealand and Western Australia
-
Sheu SY, Chen MH, Liu WY, Andrews M, James EK et al. Burkholderia dipogonis sp. nov., isolated from root nodules of Dipogon lignosus in New Zealand and Western Australia. Int J Syst Evol Microbiol 2015;65:4716–4723.
-
(2015)
Int J Syst Evol Microbiol
, vol.65
, pp. 4716-4723
-
-
Sheu, S.Y.1
Chen, M.H.2
Liu, W.Y.3
Rews, M.4
James, E.K.5
-
15
-
-
85015716453
-
Paraburkholderia piptadeniae sp. Nov. and Paraburkholderia ribeironis sp. nov., two root-nodulating symbiotic species of Piptadenia gonoacantha in Brazil
-
Bournaud C, Moulin L, Cnockaert M, Faria S, Prin Y et al. Paraburkholderia piptadeniae sp. nov. and Paraburkholderia ribeironis sp. nov., two root-nodulating symbiotic species of Piptadenia gonoacantha in Brazil. Int J Syst Evol Microbiol 2017;67:432–440.
-
(2017)
Int J Syst Evol Microbiol
, vol.67
, pp. 432-440
-
-
Bournaud, C.1
Moulin, L.2
Cnockaert, M.3
Faria, S.4
Prin, Y.5
-
16
-
-
84951090362
-
Burkholderia kirstenboschensis sp. Nov. nodulates papilionoid legumes indigenous to South Africa
-
Steenkamp ET, van Zyl E, Beukes CW, Avontuur JR, Chan WY et al. Burkholderia kirstenboschensis sp. nov. nodulates papilionoid legumes indigenous to South Africa. Syst Appl Microbiol 2015;38: 545–554.
-
(2015)
Syst Appl Microbiol
, vol.38
, pp. 545-554
-
-
Steenkamp, E.T.1
Van Zyl, E.2
Beukes, C.W.3
Avontuur, J.R.4
Chan, W.Y.5
-
17
-
-
84921485489
-
Burkholderia insulsa sp. Nov., a facultatively chemolithotrophic bacterium isolated from an arsenic-rich shallow marine hydrothermal system
-
Rusch A, Islam S, Savalia P, Amend JP. Burkholderia insulsa sp. nov., a facultatively chemolithotrophic bacterium isolated from an arsenic-rich shallow marine hydrothermal system. Int J Syst Evol Microbiol 2015;65:189–194.
-
(2015)
Int J Syst Evol Microbiol
, vol.65
, pp. 189-194
-
-
Rusch, A.1
Islam, S.2
Savalia, P.3
Amend, J.P.4
-
18
-
-
84907054382
-
Burkholderia jiangsuensis sp. Nov., a methyl parathion degrading bacterium, isolated from methyl parathion contaminated soil
-
Liu XY, Li CX, Luo XJ, Lai QL, Xu JH. Burkholderia jiangsuensis sp. nov., a methyl parathion degrading bacterium, isolated from methyl parathion contaminated soil. Int J Syst Evol Microbiol 2014; 64:3247–3253.
-
(2014)
Int J Syst Evol Microbiol
, vol.64
, pp. 3247-3253
-
-
Liu, X.Y.1
Li, C.X.2
Luo, X.J.3
Lai, Q.L.4
Xu, J.H.5
-
19
-
-
84937758745
-
Burkholderia metalliresistens sp. Nov., a multiple metal-resistant and phosphate- solubilising species isolated from heavy metal-polluted soil in Southeast China
-
Guo JK, Ding YZ, Feng RW, Wang RG, Xu YM et al. Burkholderia metalliresistens sp. nov., a multiple metal-resistant and phosphate- solubilising species isolated from heavy metal-polluted soil in Southeast China. Antonie van Leeuwenhoek 2015;107:1591-1598.
-
(2015)
Antonie Van Leeuwenhoek
, vol.107
, pp. 1591-1598
-
-
Guo, J.K.1
Ding, Y.Z.2
Feng, R.W.3
Wang, R.G.4
Xu, Y.M.5
-
20
-
-
84861854577
-
Burkholderia zhejiangensis sp. Nov., a methyl-parathion-degrading bacterium isolated from a wastewater-treatment system
-
Lu P, Zheng LQ, Sun JJ, Liu HM, Li SP et al. Burkholderia zhejiangensis sp. nov., a methyl-parathion-degrading bacterium isolated from a wastewater-treatment system. Int J Syst Evol Microbiol 2012;62:1337–1341.
-
(2012)
Int J Syst Evol Microbiol
, vol.62
, pp. 1337-1341
-
-
Lu, P.1
Zheng, L.Q.2
Sun, J.J.3
Liu, H.M.4
Li, S.P.5
-
21
-
-
84925298110
-
Burkholderia susongensis sp. Nov., a mineral-weathering bacterium isolated from weathered rock surface
-
Gu JY, Zang SG, Sheng XF, He LY, Huang Z et al. Burkholderia susongensis sp. nov., a mineral-weathering bacterium isolated from weathered rock surface. Int J Syst Evol Microbiol 2015;65:1031-1037.
-
(2015)
Int J Syst Evol Microbiol
, vol.65
, pp. 1031-1037
-
-
Gu, J.Y.1
Zang, S.G.2
Sheng, X.F.3
He, L.Y.4
Huang, Z.5
-
22
-
-
85031767454
-
Sphingomonas frigidaeris sp. Nov., isolated from an air conditioning system
-
Lee Y, Jeon CO. Sphingomonas frigidaeris sp. nov., isolated from an air conditioning system. Int J Syst Evol Microbiol 2017;67:3907-3912.
-
(2017)
Int J Syst Evol Microbiol
, vol.67
, pp. 3907-3912
-
-
Lee, Y.1
Jeon, C.O.2
-
23
-
-
84955585834
-
Confluentimicrobium naphthalenivorans sp. Nov., a naphthalene-degrading bacterium isolated from seatidal- flat sediment, and emended description of the genus Confluentimicrobium Park et al. 2015
-
Jeong HI, Jin HM, Jeon CO. Confluentimicrobium naphthalenivorans sp. nov., a naphthalene-degrading bacterium isolated from seatidal- flat sediment, and emended description of the genus Confluentimicrobium Park et al. 2015. Int J Syst Evol Microbiol 2015;65: 4191–4195.
-
(2015)
Int J Syst Evol Microbiol
, vol.65
, pp. 4191-4195
-
-
Jeong, H.I.1
Jin, H.M.2
Jeon, C.O.3
-
24
-
-
85013809817
-
Introducing EzBio- Cloud: A taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies
-
Yoon SH, Ha SM, Kwon S, Lim J, Kim Y et al. Introducing EzBio- Cloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617.
-
(2017)
Int J Syst Evol Microbiol
, vol.67
, pp. 1613-1617
-
-
Yoon, S.H.1
Ha, S.M.2
Kwon, S.3
Lim, J.4
Kim, Y.5
-
25
-
-
34047240607
-
Query-dependent banding (QDB) for faster RNA similarity searches
-
Nawrocki EP, Eddy SR. Query-dependent banding (QDB) for faster RNA similarity searches. PLoS Comput Biol 2007;3:e56.
-
(2007)
Plos Comput Biol
, vol.3
-
-
Nawrocki, E.P.1
Eddy, S.R.2
-
26
-
-
85044930221
-
-
PHYLIP (Phylogeny Inference Package), Version 3.6a. Seattle: Department of genetics, University of Washington, Seattle, WA, USA
-
Felsenstein J. PHYLIP (Phylogeny Inference Package), Version 3.6a. Seattle: Department of genetics, University of Washington, Seattle, WA, USA; 2002.
-
(2002)
-
-
Felsenstein, J.1
-
27
-
-
84899553363
-
RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
-
Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 2014;30: 1312–1313.
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
28
-
-
84960373245
-
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
-
Lee I, Ouk Kim Y, Park SC, Chun J. OrthoANI: An improved algorithm and software for calculating average nucleotide identity. Int J Syst Evol Microbiol 2016;66:1100–1103.
-
(2016)
Int J Syst Evol Microbiol
, vol.66
, pp. 1100-1103
-
-
Lee, I.1
Ouk Kim, Y.2
Park, S.C.3
Chun, J.4
-
29
-
-
84874011652
-
Genome sequence-based species delimitation with confidence intervals and improved distance functions
-
Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013;14:60.
-
(2013)
BMC Bioinformatics
, vol.14
, pp. 60
-
-
Meier-Kolthoff, J.P.1
Auch, A.F.2
Klenk, H.P.3
Göker, M.4
-
30
-
-
55149102617
-
Statistical superiority of genome-probing microarrays as genomic DNA-DNA hybridization in revealing the bacterial phylogenetic relationship compared to conventional methods
-
Chang HW, Nam YD, Jung MY, Kim KH, Roh SW et al. Statistical superiority of genome-probing microarrays as genomic DNA-DNA hybridization in revealing the bacterial phylogenetic relationship compared to conventional methods. J Microbiol Methods 2008;75: 523–530.
-
(2008)
J Microbiol Methods
, vol.75
, pp. 523-530
-
-
Chang, H.W.1
Nam, Y.D.2
Jung, M.Y.3
Kim, K.H.4
Roh, S.W.5
-
31
-
-
0035989633
-
Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology
-
Stackebrandt E, Frederiksen W, Garrity GM, Grimont PA, Kämpfer P et al. Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 2002;52:1043–1047.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 1043-1047
-
-
Stackebrandt, E.1
Frederiksen, W.2
Garrity, G.M.3
Grimont, P.A.4
Kämpfer, P.5
-
32
-
-
73149098333
-
Shifting the genomic gold standard for the prokaryotic species definition
-
Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 2009;106:19126–19131.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 19126-19131
-
-
Richter, M.1
Rosselló-Móra, R.2
-
33
-
-
33947302827
-
Taxonomic parameters revisited: Tarnished gold standards
-
Stackebrandt E, Ebers J. Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 2006;33:152–155.
-
(2006)
Microbiol Today
, vol.33
, pp. 152-155
-
-
Stackebrandt, E.1
Ebers, J.2
-
34
-
-
84893511241
-
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes
-
Kim M, Oh HS, Park SC, Chun J. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 2014;64:346–351.
-
(2014)
Int J Syst Evol Microbiol
, vol.64
, pp. 346-351
-
-
Kim, M.1
Oh, H.S.2
Park, S.C.3
Chun, J.4
-
36
-
-
84860381912
-
Alteromonas as a key agent of polycyclic aromatic hydrocarbon biodegradation in crude oil-contaminated coastal sediment
-
Jin HM, Kim JM, Lee HJ, Madsen EL, Jeon CO. Alteromonas as a key agent of polycyclic aromatic hydrocarbon biodegradation in crude oil-contaminated coastal sediment. Environ Sci Technol 2012;46:7731–7740.
-
(2012)
Environ Sci Technol
, vol.46
, pp. 7731-7740
-
-
Jin, H.M.1
Kim, J.M.2
Lee, H.J.3
Madsen, E.L.4
Jeon, C.O.5
-
37
-
-
84883463270
-
Isolation of a BTEX-degrading bacterium, Janibacter sp. SB2, from a sea-tidal flat and optimization of biodegradation conditions
-
Jin HM, Choi EJ, Jeon CO. Isolation of a BTEX-degrading bacterium, Janibacter sp. SB2, from a sea-tidal flat and optimization of biodegradation conditions. Bioresour Technol 2013;145:57–64.
-
(2013)
Bioresour Technol
, vol.145
, pp. 57-64
-
-
Jin, H.M.1
Choi, E.J.2
Jeon, C.O.3
-
38
-
-
77956816836
-
Classical and rapid identification methods for medically important bacteria
-
Lányí B. Classical and rapid identification methods for medically important bacteria. Methods Microbiol 1988;19:1–67.
-
(1988)
Methods Microbiol
, vol.19
, pp. 1-67
-
-
Lányí, B.1
-
39
-
-
0842345383
-
Polaromonas naphthalenivorans sp. Nov., a naphthalene-degrading bacterium from naphthalene-contaminated sediment
-
Jeon CO, Park W, Ghiorse WC, Madsen EL. Polaromonas naphthalenivorans sp. nov., a naphthalene-degrading bacterium from naphthalene-contaminated sediment. Int J Syst Evol Microbiol 2004;54:93–97.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 93-97
-
-
Jeon, C.O.1
Park, W.2
Ghiorse, W.C.3
Madsen, E.L.4
-
40
-
-
0000612080
-
Phenotypic characterization
-
Gerhardt P (editor), Washington, DC: American Society for Microbiology
-
Smibert RM, Krieg NR. Phenotypic characterization. In: Gerhardt P (editor). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology; 1994. pp. 607–654.
-
(1994)
Methods for General and Molecular Bacteriology
, pp. 607-654
-
-
Smibert, R.M.1
Krieg, N.R.2
-
41
-
-
77956800518
-
Lipid and cell-wall analysis in bacterial systematics
-
Komagata K, Suzuki K. Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 1988;19:161–208.
-
(1988)
Methods Microbiol
, vol.19
, pp. 161-208
-
-
Komagata, K.1
Suzuki, K.2
|