-
1
-
-
84870706630
-
Population genomic scan for candidate signatures of balancing selection to guide antigen characterization in malaria parasites
-
Amambua-Ngwa A, et al. 2012. Population genomic scan for candidate signatures of balancing selection to guide antigen characterization in malaria parasites. PLoS Genet. 8(11):e1002992.
-
(2012)
PLoS Genet.
, vol.8
, Issue.11
, pp. e1002992
-
-
Amambua-Ngwa, A.1
-
2
-
-
84899577039
-
EstMOI: Estimating multiplicity of infection using parasite deep sequencing data
-
Assefa SA, et al. 2014. estMOI: estimating multiplicity of infection using parasite deep sequencing data. Bioinformatics 30(9):1292-1294.
-
(2014)
Bioinformatics
, vol.30
, Issue.9
, pp. 1292-1294
-
-
Assefa, S.A.1
-
3
-
-
34547617172
-
Recombination rate estimation in the presence of hotspots
-
Auton A,McVean G. 2007. Recombination rate estimation in the presence of hotspots. Genome Res. 17(8):1219-1227.
-
(2007)
Genome Res.
, vol.17
, Issue.8
, pp. 1219-1227
-
-
Auton, A.1
McVean, G.2
-
4
-
-
84942850776
-
Population, genetic, and antigenic diversity of the apicomplexan Eimeria tenella and their relevance to vaccine development
-
Blake DP, et al. 2015. Population, genetic, and antigenic diversity of the apicomplexan Eimeria tenella and their relevance to vaccine development. Proc Natl Acad Sci U S A. 112(38):E5343-E5350.
-
(2015)
Proc Natl Acad Sci U S A.
, vol.112
, Issue.38
, pp. E5343-E5350
-
-
Blake, D.P.1
-
6
-
-
84878589007
-
Improving the accuracy and efficiency of identity-by-descent detection in population data
-
Browning BL, Browning SR. 2013. Improving the accuracy and efficiency of identity-by-descent detection in population data. Genetics 194(2):459-471.
-
(2013)
Genetics
, vol.194
, Issue.2
, pp. 459-471
-
-
Browning, B.L.1
Browning, S.R.2
-
7
-
-
84862908094
-
Models and estimators linking individual-based and sample-based rarefaction, extrapolation and comparison of assemblages
-
Colwell RK, et al. 2012. Models and estimators linking individual-based and sample-based rarefaction, extrapolation and comparison of assemblages. J Plant Ecol. 5(1):3-21.
-
(2012)
J Plant Ecol.
, vol.5
, Issue.1
, pp. 3-21
-
-
Colwell, R.K.1
-
8
-
-
0025800541
-
The epidemiology of multiple-clone Plasmodium falciparum infections in Gambian patients
-
Conway DJ, Greenwood BM, McBride JS. 1991. The epidemiology of multiple-clone Plasmodium falciparum infections in Gambian patients. Parasitology 103(Pt 1):1-6.
-
(1991)
Parasitology
, vol.103
, pp. 1-6
-
-
Conway, D.J.1
Greenwood, B.M.2
McBride, J.S.3
-
9
-
-
0025851123
-
Population genetics of Plasmodium falciparum within a malaria hyperendemic area
-
Conway DJ, McBride JS. 1991. Population genetics of Plasmodium falciparum within a malaria hyperendemic area. Parasitology 103(Pt 1): 7-16.
-
(1991)
Parasitology
, vol.103
, pp. 7-16
-
-
Conway, D.J.1
McBride, J.S.2
-
10
-
-
84920645442
-
A quantitative comparison of single-cell whole genome amplification methods
-
de Bourcy CF, et al. 2014. A quantitative comparison of single-cell whole genome amplification methods. PLoS ONE. 9(8):e105585.
-
(2014)
PLoS ONE.
, vol.9
, Issue.8
, pp. e105585
-
-
De Bourcy, C.F.1
-
11
-
-
85003749542
-
Identification and classification of the malaria parasite blood developmental stages, using imaging flow cytometry
-
Dekel E, et al. 2017. Identification and classification of the malaria parasite blood developmental stages, using imaging flow cytometry. Methods 112:157-166.
-
(2017)
Methods
, vol.112
, pp. 157-166
-
-
Dekel, E.1
-
12
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo MA, et al. 2011. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet. 43(5):491-498.
-
(2011)
Nat Genet.
, vol.43
, Issue.5
, pp. 491-498
-
-
DePristo, M.A.1
-
13
-
-
84928712259
-
COIL: A methodology for evaluating malarial complexity of infection using likelihood from single nucleotide polymorphism data
-
Galinsky K, et al. 2015. COIL: a methodology for evaluating malarial complexity of infection using likelihood from single nucleotide polymorphism data. Malar J. 14:4.
-
(2015)
Malar J.
, vol.14
, pp. 4
-
-
Galinsky, K.1
-
14
-
-
0037015614
-
Genome sequence of the humanmalaria parasite Plasmodium falciparum
-
GardnerMJ, et al. 2002. Genome sequence of the humanmalaria parasite Plasmodium falciparum. Nature 419(6906):498-511.
-
(2002)
Nature
, vol.419
, Issue.6906
, pp. 498-511
-
-
Gardner, M.J.1
-
15
-
-
84958606331
-
Single-cell genome sequencing: Current state of the science
-
Gawad C, Koh W, Quake SR. 2016. Single-cell genome sequencing: current state of the science. Nat Rev Genet. 17(3):175-188.
-
(2016)
Nat Rev Genet.
, vol.17
, Issue.3
, pp. 175-188
-
-
Gawad, C.1
Koh, W.2
Quake, S.R.3
-
16
-
-
84890055556
-
Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells
-
Gole J, et al. 2013. Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells. Nat Biotechnol. 31(12):1126-1132.
-
(2013)
Nat Biotechnol.
, vol.31
, Issue.12
, pp. 1126-1132
-
-
Gole, J.1
-
17
-
-
84855900920
-
The architecture of long-range haplotypes shared within and across populations
-
Gusev A, et al. 2012. The architecture of long-range haplotypes shared within and across populations. Mol Biol Evol. 29(2):473-486.
-
(2012)
Mol Biol Evol.
, vol.29
, Issue.2
, pp. 473-486
-
-
Gusev, A.1
-
18
-
-
0029586396
-
Estimation of numbers of malaria clones in blood samples
-
Hill WG, Babiker HA. 1995. Estimation of numbers of malaria clones in blood samples. Proc Biol Sci. 262(1365):249-257.
-
(1995)
Proc Biol Sci.
, vol.262
, Issue.1365
, pp. 249-257
-
-
Hill, W.G.1
Babiker, H.A.2
-
19
-
-
78650529458
-
Exposing malaria in-host diversity and estimating population diversity by capture-recapture usingmassively parallel pyrosequencing
-
Juliano JJ, et al. 2010. Exposing malaria in-host diversity and estimating population diversity by capture-recapture usingmassively parallel pyrosequencing. Proc Natl Acad Sci U S A. 107(46):20138-20143.
-
(2010)
Proc Natl Acad Sci U S A.
, vol.107
, Issue.46
, pp. 20138-20143
-
-
Juliano, J.J.1
-
22
-
-
84945278558
-
Somatic mutation in single human neurons tracks developmental and transcriptional history
-
Lodato MA, et al. 2015. Somatic mutation in single human neurons tracks developmental and transcriptional history. Science 350(6256):94-98.
-
(2015)
Science
, vol.350
, Issue.6256
, pp. 94-98
-
-
Lodato, M.A.1
-
23
-
-
84863982076
-
Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing
-
Manske M, et al. 2012. Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing. Nature 487(7407):375-379.
-
(2012)
Nature
, vol.487
, Issue.7407
, pp. 375-379
-
-
Manske, M.1
-
24
-
-
84984985832
-
Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum
-
Miles A, et al. 2016. Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum. Genome Res. 26(9):1288-1299.
-
(2016)
Genome Res.
, vol.26
, Issue.9
, pp. 1288-1299
-
-
Miles, A.1
-
25
-
-
84924080547
-
Genetic architecture of artemisinin-resistant Plasmodium falciparum
-
Miotto O, et al. 2015. Genetic architecture of artemisinin-resistant Plasmodium falciparum. Nat Genet. 47(3):226-234.
-
(2015)
Nat Genet.
, vol.47
, Issue.3
, pp. 226-234
-
-
Miotto, O.1
-
26
-
-
84902378803
-
Improved multiple displacement amplification (iMDA) and ultraclean reagents
-
Motley ST, et al. 2014. Improved multiple displacement amplification (iMDA) and ultraclean reagents. BMC Genomics. 15:443.
-
(2014)
BMC Genomics.
, vol.15
, pp. 443
-
-
Motley, S.T.1
-
27
-
-
84901833907
-
Single-cell genomics for dissection of complex malaria infections
-
Nair S, et al. 2014. Single-cell genomics for dissection of complex malaria infections. Genome Res. 24(6):1028-1038.
-
(2014)
Genome Res.
, vol.24
, Issue.6
, pp. 1028-1038
-
-
Nair, S.1
-
28
-
-
79953766940
-
Tumour evolution inferred by single-cell sequencing
-
Navin N, et al. 2011. Tumour evolution inferred by single-cell sequencing. Nature 472(7341):90-94.
-
(2011)
Nature
, vol.472
, Issue.7341
, pp. 90-94
-
-
Navin, N.1
-
29
-
-
84987722638
-
Close kinship within multiple-genotype malaria parasite infections
-
Nkhoma SC, et al. 2012. Close kinship within multiple-genotype malaria parasite infections. Proc Biol Sci. 279(1738):2589-2598.
-
(2012)
Proc Biol Sci.
, vol.279
, Issue.1738
, pp. 2589-2598
-
-
Nkhoma, S.C.1
-
30
-
-
84872029995
-
Population genetic correlates of declining transmission in a human pathogen
-
Nkhoma SC, et al. 2013. Population genetic correlates of declining transmission in a human pathogen. Mol Ecol. 22(2):273-285.
-
(2013)
Mol Ecol.
, vol.22
, Issue.2
, pp. 273-285
-
-
Nkhoma, S.C.1
-
31
-
-
84978791332
-
Inferring strain mixture within Clinical Plasmodium falciparum isolates from genomic sequence data
-
O'Brien JD, Iqbal Z, Wendler J, Amenga-Etego L. 2016. Inferring strain mixture within Clinical Plasmodium falciparum isolates from genomic sequence data. PLoS Comput Biol. 12:e1004824.
-
(2016)
PLoS Comput Biol.
, vol.12
, pp. e1004824
-
-
O'Brien, J.D.1
Iqbal, Z.2
Wendler, J.3
Amenga-Etego, L.4
-
32
-
-
85006489446
-
Whole genome sequencing of Plasmodium falciparum from dried blood spots using selective whole genome amplification
-
Oyola SO, et al. 2016. Whole genome sequencing of Plasmodium falciparum from dried blood spots using selective whole genome amplification. Malar J. 15(1):597.
-
(2016)
Malar J.
, vol.15
, Issue.1
, pp. 597
-
-
Oyola, S.O.1
-
33
-
-
84971401229
-
Genomic analysis of local variation and recent evolution in Plasmodium vivax
-
Pearson RD, et al. 2016. Genomic analysis of local variation and recent evolution in Plasmodium vivax. Nat Genet. 48(8):959-964.
-
(2016)
Nat Genet.
, vol.48
, Issue.8
, pp. 959-964
-
-
Pearson, R.D.1
-
34
-
-
84949227547
-
BEDTools: The Swiss-army tool for genome feature analysis
-
Quinlan AR. 2014. BEDTools: the Swiss-army tool for genome feature analysis. Curr Protoc Bioinformatics. 47:1-34.
-
(2014)
Curr Protoc Bioinformatics.
, vol.47
, pp. 1-34
-
-
Quinlan, A.R.1
-
35
-
-
84878314759
-
The geography of recent genetic ancestry across Europe
-
Ralph P, Coop G. 2013. The geography of recent genetic ancestry across Europe. PLoS Biol. 11(5):e1001555.
-
(2013)
PLoS Biol.
, vol.11
, Issue.5
, pp. e1001555
-
-
Ralph, P.1
Coop, G.2
-
36
-
-
35148863407
-
Quantitative dissection of clone-specific growth rates in cultured malaria parasites
-
Reilly HB, Wang H, Steuter JA, Marx AM, Ferdig MT. 2007. Quantitative dissection of clone-specific growth rates in cultured malaria parasites. Int J Parasitol. 37(14):1599-1607.
-
(2007)
Int J Parasitol.
, vol.37
, Issue.14
, pp. 1599-1607
-
-
Reilly, H.B.1
Wang, H.2
Steuter, J.A.3
Marx, A.M.4
Ferdig, M.T.5
-
37
-
-
0019402859
-
Cloning of naturally occurringmixed infections ofmalaria parasites
-
Rosario V. 1981. Cloning of naturally occurringmixed infections ofmalaria parasites. Science 212(4498):1037-1038.
-
(1981)
Science
, vol.212
, Issue.4498
, pp. 1037-1038
-
-
Rosario, V.1
-
38
-
-
0027420335
-
High sensitivity of detection of human malaria parasites by the use of nested polymerase chain reaction
-
Snounou G, et al. 1993. High sensitivity of detection of human malaria parasites by the use of nested polymerase chain reaction. Mol Biochem Parasitol. 61:315-320.
-
(1993)
Mol Biochem Parasitol.
, vol.61
, pp. 315-320
-
-
Snounou, G.1
-
39
-
-
85008462104
-
Modeling human population separation history using physically phased genomes
-
Song S, Sliwerska E, Emery S, Kidd JM. 2017.Modeling human population separation history using physically phased genomes. Genetics 205(1):385-395.
-
(2017)
Genetics
, vol.205
, Issue.1
, pp. 385-395
-
-
Song, S.1
Sliwerska, E.2
Emery, S.3
Kidd, J.M.4
-
40
-
-
84890586977
-
Decomposition of waste DNA with extended autoclaving under unsaturated steam
-
Suyama T, Kawaharasaki M. 2013. Decomposition of waste DNA with extended autoclaving under unsaturated steam. Biotechniques 55(6):296-299.
-
(2013)
Biotechniques
, vol.55
, Issue.6
, pp. 296-299
-
-
Suyama, T.1
Kawaharasaki, M.2
-
41
-
-
84856802148
-
Using CF11 cellulose columns to inexpensively and effectively remove human DNA from Plasmodium falciparuminfected whole blood samples
-
Venkatesan M, et al. 2012. Using CF11 cellulose columns to inexpensively and effectively remove human DNA from Plasmodium falciparuminfected whole blood samples. Malar J. 11:41.
-
(2012)
Malar J.
, vol.11
, pp. 41
-
-
Venkatesan, M.1
-
42
-
-
85044529288
-
Single cell sequencing: A distinct new field
-
Wang J, Song Y. 2017. Single cell sequencing: a distinct new field. Clin Transl Med. 6(1):10.
-
(2017)
Clin Transl Med.
, vol.6
, Issue.1
, pp. 10
-
-
Wang, J.1
Song, Y.2
-
43
-
-
80054791084
-
Decontamination of MDA reagents for single cell whole genome amplification
-
Woyke T, et al. 2011. Decontamination of MDA reagents for single cell whole genome amplification. PLoS ONE. 6(10):e26161.
-
(2011)
PLoS ONE.
, vol.6
, Issue.10
, pp. e26161
-
-
Woyke, T.1
|