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Volumn 83, Issue 12, 2018, Pages 997-1004

High Throughput Phenotyping for Dimensional Psychopathology in Electronic Health Records

Author keywords

Computed phenotype; Electronic health record; Natural language processing; Research Domain Criteria; Topic modeling; Transdiagnostic

Indexed keywords

ADULT; AGE; AROUSAL; ARTICLE; BIPOLAR DISORDER; CLINICAL FEATURE; CLINICAL OUTCOME; COHORT ANALYSIS; DEPRESSION; ELECTRONIC HEALTH RECORD; FEMALE; FOLLOW UP; HOSPITAL ADMISSION; HOSPITAL DISCHARGE; HOSPITAL READMISSION; HOSPITALIZATION; HUMAN; LENGTH OF STAY; MAJOR CLINICAL STUDY; MAJOR DEPRESSION; MALE; MANIC PSYCHOSIS; MENTAL DISEASE; NATIONAL HEALTH ORGANIZATION; NATURAL LANGUAGE PROCESSING; PHENOTYPE; PILOT STUDY; PRIORITY JOURNAL; SCHIZOAFFECTIVE PSYCHOSIS; SCHIZOPHRENIA; SCORING SYSTEM; SEX DIFFERENCE; SYMPTOM ASSESSMENT; VALIDATION STUDY; CLINICAL TRIAL; MIDDLE AGED; MULTICENTER STUDY; NEUROPSYCHOLOGICAL TEST; PSYCHOLOGICAL RATING SCALE; PSYCHOLOGY; STATISTICS AND NUMERICAL DATA;

EID: 85042387417     PISSN: 00063223     EISSN: 18732402     Source Type: Journal    
DOI: 10.1016/j.biopsych.2018.01.011     Document Type: Article
Times cited : (47)

References (42)
  • 1
    • 84920717933 scopus 로고    scopus 로고
    • How many different ways do patients meet the diagnostic criteria for major depressive disorder?
    • Zimmerman, M., Ellison, W., Young, D., Chelminski, I., Dalrymple, K., How many different ways do patients meet the diagnostic criteria for major depressive disorder?. Compr Psychiatry 56 (2015), 29–34.
    • (2015) Compr Psychiatry , vol.56 , pp. 29-34
    • Zimmerman, M.1    Ellison, W.2    Young, D.3    Chelminski, I.4    Dalrymple, K.5
  • 2
    • 84938288595 scopus 로고    scopus 로고
    • Lifetime prevalence of anxiety disorders in people with bipolar disorder: A systematic review and meta-analysis
    • Pavlova, B., Perlis, R.H., Alda, M., Uher, R., Lifetime prevalence of anxiety disorders in people with bipolar disorder: A systematic review and meta-analysis. Lancet Psychiatry 2 (2015), 710–717.
    • (2015) Lancet Psychiatry , vol.2 , pp. 710-717
    • Pavlova, B.1    Perlis, R.H.2    Alda, M.3    Uher, R.4
  • 4
    • 84883465830 scopus 로고    scopus 로고
    • Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs
    • Cross-Disorder Group of the Psychiatric Genomics Consortium, Lee, S.H., Ripke, S., Neale, B.M., Faraone, S.V., Purcell, S.M., et al. Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs. Nat Genet 45 (2013), 984–994.
    • (2013) Nat Genet , vol.45 , pp. 984-994
    • Lee, S.H.1    Ripke, S.2    Neale, B.M.3    Faraone, S.V.4    Purcell, S.M.5
  • 6
    • 77954230363 scopus 로고    scopus 로고
    • Research domain criteria (RDoC): Toward a new classification framework for research on mental disorders
    • Insel, T., Cuthbert, B., Garvey, M., Heinssen, R., Pine, D.S., Quinn, K., et al. Research domain criteria (RDoC): Toward a new classification framework for research on mental disorders. Am J Psychiatry 167 (2010), 748–751.
    • (2010) Am J Psychiatry , vol.167 , pp. 748-751
    • Insel, T.1    Cuthbert, B.2    Garvey, M.3    Heinssen, R.4    Pine, D.S.5    Quinn, K.6
  • 8
    • 84861683430 scopus 로고    scopus 로고
    • Research Domain Criteria: Cognitive systems, neural circuits, and dimensions of behavior
    • Morris, S.E., Cuthbert, B.N., Research Domain Criteria: Cognitive systems, neural circuits, and dimensions of behavior. Dialogues Clin Neurosci 14 (2012), 29–37.
    • (2012) Dialogues Clin Neurosci , vol.14 , pp. 29-37
    • Morris, S.E.1    Cuthbert, B.N.2
  • 9
    • 85047415102 scopus 로고    scopus 로고
    • : The future of RDoC. National Institute of Mental Health. Available at: Accessed January 21, 2018
    • Gordon J (2017): The future of RDoC. National Institute of Mental Health. Available at: https://www.nimh.nih.gov/about/director/messages/2017/the-future-of-rdoc.shtml. Accessed January 21, 2018.
    • (2017)
    • Gordon, J.1
  • 10
    • 84929493513 scopus 로고    scopus 로고
    • : Brain disorders? Precisely. Science. 348:499-500.
    • Insel TR, Cuthbert BN (2015): Brain disorders? Precisely. Science. 348:499-500.
    • (2015)
    • Insel, T.R.1    Cuthbert, B.N.2
  • 11
    • 85019685051 scopus 로고    scopus 로고
    • Computational psychiatry: New perspectives on mental illness
    • MIT Press Cambridge, MA
    • Redish, A.D., Gordon, J.A., Computational psychiatry: New perspectives on mental illness. 2016, MIT Press, Cambridge, MA.
    • (2016)
    • Redish, A.D.1    Gordon, J.A.2
  • 13
    • 0003612818 scopus 로고    scopus 로고
    • Foundations of statistical natural language processing
    • MIT Press Cambridge, MA
    • Manning, C.D., Schütze, H., Foundations of statistical natural language processing. 1999, MIT Press, Cambridge, MA.
    • (1999)
    • Manning, C.D.1    Schütze, H.2
  • 15
    • 82655165845 scopus 로고    scopus 로고
    • Using electronic medical records to enable large-scale studies in psychiatry: Treatment resistant depression as a model
    • Perlis, R.H., Iosifescu, D.V., Castro, V.M., Murphy, S.N., Gainer, V.S., Minnier, J., et al. Using electronic medical records to enable large-scale studies in psychiatry: Treatment resistant depression as a model. Psychol Med 42 (2012), 41–50.
    • (2012) Psychol Med , vol.42 , pp. 41-50
    • Perlis, R.H.1    Iosifescu, D.V.2    Castro, V.M.3    Murphy, S.N.4    Gainer, V.S.5    Minnier, J.6
  • 16
    • 84948148814 scopus 로고    scopus 로고
    • Negative symptoms in schizophrenia: A study in a large clinical sample of patients using a novel automated method
    • Patel, R., Jayatilleke, N., Broadbent, M., Chang, C.K., Foskett, N., Gorrell, G., et al. Negative symptoms in schizophrenia: A study in a large clinical sample of patients using a novel automated method. BMJ Open, 5, 2015, e007619.
    • (2015) BMJ Open , vol.5
    • Patel, R.1    Jayatilleke, N.2    Broadbent, M.3    Chang, C.K.4    Foskett, N.5    Gorrell, G.6
  • 17
    • 85047393331 scopus 로고    scopus 로고
    • : Finding negative symptoms of schizophrenia in patient records. In: Proceedings of the Workshop on NLP for Medicine and Biology associated with RANLP 2013, Hissar, Bulgaria, September
    • Gorrell G, Jackson R, Roberts A, Stewart R (2013): Finding negative symptoms of schizophrenia in patient records. In: Proceedings of the Workshop on NLP for Medicine and Biology associated with RANLP 2013, Hissar, Bulgaria, September 13, 2013, 9–17.
    • (2013) , vol.13 , pp. 9-17
    • Gorrell, G.1    Jackson, R.2    Roberts, A.3    Stewart, R.4
  • 18
    • 84919624289 scopus 로고    scopus 로고
    • Classification of CT pulmonary angiography reports by presence, chronicity, and location of pulmonary embolism with natural language processing
    • Yu, S., Kumamaru, K.K., George, E., Dunne, R.M., Bedayat, A., Neykov, M., et al. Classification of CT pulmonary angiography reports by presence, chronicity, and location of pulmonary embolism with natural language processing. J Biomed Inform 52 (2014), 386–393.
    • (2014) J Biomed Inform , vol.52 , pp. 386-393
    • Yu, S.1    Kumamaru, K.K.2    George, E.3    Dunne, R.M.4    Bedayat, A.5    Neykov, M.6
  • 19
    • 84961288293 scopus 로고    scopus 로고
    • A clinical perspective on the relevance of research domain criteria in electronic health records
    • McCoy, T.H., Castro, V.M., Rosenfield, H.R., Cagan, A., Kohane, I.S., Perlis, R.H., A clinical perspective on the relevance of research domain criteria in electronic health records. Am J Psychiatry 172 (2015), 316–320.
    • (2015) Am J Psychiatry , vol.172 , pp. 316-320
    • McCoy, T.H.1    Castro, V.M.2    Rosenfield, H.R.3    Cagan, A.4    Kohane, I.S.5    Perlis, R.H.6
  • 20
    • 56149096387 scopus 로고    scopus 로고
    • Architecture of the open-source clinical research chart from Informatics for Integrating Biology and the Bedside
    • Murphy, S.N., Mendis, M., Hackett, K., Kuttan, R., Pan, W., Phillips, L.C., et al. Architecture of the open-source clinical research chart from Informatics for Integrating Biology and the Bedside. AMIA Annu Symp Proc, 2007, 548–552.
    • (2007) AMIA Annu Symp Proc , pp. 548-552
    • Murphy, S.N.1    Mendis, M.2    Hackett, K.3    Kuttan, R.4    Pan, W.5    Phillips, L.C.6
  • 21
    • 69749099175 scopus 로고    scopus 로고
    • Instrumenting the health care enterprise for discovery research in the genomic era
    • Murphy, S., Churchill, S., Bry, L., Chueh, H., Weiss, S., Lazarus, R., et al. Instrumenting the health care enterprise for discovery research in the genomic era. Genome Res 19 (2009), 1675–1681.
    • (2009) Genome Res , vol.19 , pp. 1675-1681
    • Murphy, S.1    Churchill, S.2    Bry, L.3    Chueh, H.4    Weiss, S.5    Lazarus, R.6
  • 22
    • 77953170556 scopus 로고    scopus 로고
    • Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2)
    • Murphy, S.N., Weber, G., Mendis, M., Gainer, V., Chueh, H.C., Churchill, S., et al. Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2). J Am Med Inform Assoc 17 (2010), 124–130.
    • (2010) J Am Med Inform Assoc , vol.17 , pp. 124-130
    • Murphy, S.N.1    Weber, G.2    Mendis, M.3    Gainer, V.4    Chueh, H.C.5    Churchill, S.6
  • 23
    • 33744600902 scopus 로고    scopus 로고
    • National Institute of Mental Health. Development of the RDoC framework
    • Available at: Accessed January 21, 2018
    • National Institute of Mental Health. Development of the RDoC framework. Available at: https://www.nimh.nih.gov/research-priorities/rdoc/development-of-the-rdoc-framework.shtml Accessed January 21, 2018.
  • 24
    • 85047438698 scopus 로고    scopus 로고
    • IALIST lexicon and lexical tools. In: UMLS reference manual. Bethesda, MD: National Library of Medicine
    • The SPECIALIST lexicon and lexical tools. In: UMLS reference manual. Bethesda, MD: National Library of Medicine.
    • The, S.P.E.C.1
  • 25
    • 84954218290 scopus 로고    scopus 로고
    • Toward high-throughput phenotyping: Unbiased automated feature extraction and selection from knowledge sources
    • Yu, S., Liao, K.P., Shaw, S.Y., Gainer, V.S., Churchill, S.E., Szolovits, P., et al. Toward high-throughput phenotyping: Unbiased automated feature extraction and selection from knowledge sources. J Am Med Inform Assoc 22 (2015), 993–1000.
    • (2015) J Am Med Inform Assoc , vol.22 , pp. 993-1000
    • Yu, S.1    Liao, K.P.2    Shaw, S.Y.3    Gainer, V.S.4    Churchill, S.E.5    Szolovits, P.6
  • 27
    • 84969819931 scopus 로고    scopus 로고
    • Large-scale multiple testing of correlations
    • Cai, T.T., Liu, W., Large-scale multiple testing of correlations. J Am Stat Assoc 111 (2016), 229–240.
    • (2016) J Am Stat Assoc , vol.111 , pp. 229-240
    • Cai, T.T.1    Liu, W.2
  • 28
    • 2442426473 scopus 로고    scopus 로고
    • Bootstrap methods for developing predictive models
    • Austin, P.C., Tu, J.V., Bootstrap methods for developing predictive models. Am Stat 58 (2004), 131–137.
    • (2004) Am Stat , vol.58 , pp. 131-137
    • Austin, P.C.1    Tu, J.V.2
  • 29
    • 33846114377 scopus 로고    scopus 로고
    • The adaptive Lasso and its oracle properties
    • Zou, H., The adaptive Lasso and its oracle properties. J Am Stat Assoc 101 (2006), 1418–1429.
    • (2006) J Am Stat Assoc , vol.101 , pp. 1418-1429
    • Zou, H.1
  • 31
    • 85047434522 scopus 로고    scopus 로고
    • 2016 CEGS N-GRID shared-tasks and workshop on challenges in natural language processing for clinical data
    • Available at: Accessed January 21, 2018
    • Filannino, M., Stubbs, A., Uzuner, Ü., 2016 CEGS N-GRID shared-tasks and workshop on challenges in natural language processing for clinical data. Available at: https://www.i2b2.org/NLP/RDoCforPsychiatry/, 2016 Accessed January 21, 2018.
    • (2016)
    • Filannino, M.1    Stubbs, A.2    Uzuner, Ü.3
  • 32
    • 77952431048 scopus 로고    scopus 로고
    • Using the Cambridge Neuropsychological Test Automated Battery (CANTAB) to assess the cognitive impact of electroconvulsive therapy on visual and visuospatial memory
    • Falconer, D.W., Cleland, J., Fielding, S., Reid, I.C., Using the Cambridge Neuropsychological Test Automated Battery (CANTAB) to assess the cognitive impact of electroconvulsive therapy on visual and visuospatial memory. Psychol Med 40 (2010), 1017–1025.
    • (2010) Psychol Med , vol.40 , pp. 1017-1025
    • Falconer, D.W.1    Cleland, J.2    Fielding, S.3    Reid, I.C.4
  • 33
    • 33947531135 scopus 로고    scopus 로고
    • Automated Neuropsychological Test Battery (CANTAB) in mild cognitive impairment and in Alzheimer's disease
    • Egerhazi, A., Berecz, R., Bartok, E., Degrell, I., Automated Neuropsychological Test Battery (CANTAB) in mild cognitive impairment and in Alzheimer's disease. Prog Neuropsychopharmacol Biol Psychiatry 31 (2007), 746–751.
    • (2007) Prog Neuropsychopharmacol Biol Psychiatry , vol.31 , pp. 746-751
    • Egerhazi, A.1    Berecz, R.2    Bartok, E.3    Degrell, I.4
  • 34
    • 33847065797 scopus 로고    scopus 로고
    • Computerized assessment of cognition in schizophrenia: promises and pitfalls of CANTAB
    • Levaux, M.N., Potvin, S., Sepehry, A.A., Sablier, J., Mendrek, A., Stip, E., Computerized assessment of cognition in schizophrenia: promises and pitfalls of CANTAB. Eur Psychiatry 22 (2007), 104–115.
    • (2007) Eur Psychiatry , vol.22 , pp. 104-115
    • Levaux, M.N.1    Potvin, S.2    Sepehry, A.A.3    Sablier, J.4    Mendrek, A.5    Stip, E.6
  • 35
    • 84975753826 scopus 로고    scopus 로고
    • R: A language and environment for statistical computing
    • 3.1.1 ed. R Foundation for Statistical Computing Vienna, Austria
    • R Development Core Team. R: A language and environment for statistical computing. 3.1.1 ed., 2016, R Foundation for Statistical Computing, Vienna, Austria.
    • (2016)
  • 36
    • 85044585865 scopus 로고    scopus 로고
    • Genome-wide association study of dimensional psychopathology using electronic health records
    • McCoy, T.H. Jr., Castro, V.M., Hart, K.L., Pellegrini, A.M., Yu, S., Cai, T., Perlis, R.H., Genome-wide association study of dimensional psychopathology using electronic health records. Biol Psychiatry 83 (2018), 1005–1011.
    • (2018) Biol Psychiatry , vol.83 , pp. 1005-1011
    • McCoy, T.H.1    Castro, V.M.2    Hart, K.L.3    Pellegrini, A.M.4    Yu, S.5    Cai, T.6    Perlis, R.H.7
  • 37
    • 84997796206 scopus 로고    scopus 로고
    • Improving prediction of suicide and accidental death after discharge from general hospitals with natural language processing
    • McCoy, T.H. Jr., Castro, V.M., Roberson, A.M., Snapper, L.A., Perlis, R.H., Improving prediction of suicide and accidental death after discharge from general hospitals with natural language processing. JAMA Psychiatry 73 (2016), 1064–1071.
    • (2016) JAMA Psychiatry , vol.73 , pp. 1064-1071
    • McCoy, T.H.1    Castro, V.M.2    Roberson, A.M.3    Snapper, L.A.4    Perlis, R.H.5
  • 39
    • 70349470770 scopus 로고    scopus 로고
    • Context: An algorithm for determining negation, experiencer, and temporal status from clinical reports
    • Harkema, H., Dowling, J.N., Thornblade, T., Chapman, W.W., Context: An algorithm for determining negation, experiencer, and temporal status from clinical reports. J Biomed Inform 42 (2009), 839–851.
    • (2009) J Biomed Inform , vol.42 , pp. 839-851
    • Harkema, H.1    Dowling, J.N.2    Thornblade, T.3    Chapman, W.W.4
  • 40
    • 84911878838 scopus 로고    scopus 로고
    • Negation's not solved: Generalizability versus optimizability in clinical natural language processing
    • Wu, S., Miller, T., Masanz, J., Coarr, M., Halgrim, S., Carrell, D., et al. Negation's not solved: Generalizability versus optimizability in clinical natural language processing. PLoS One, 9, 2014, e112774.
    • (2014) PLoS One , vol.9
    • Wu, S.1    Miller, T.2    Masanz, J.3    Coarr, M.4    Halgrim, S.5    Carrell, D.6
  • 41
    • 84927927981 scopus 로고    scopus 로고
    • DEEPEN: A negation detection system for clinical text incorporating dependency relation into NegEx
    • Mehrabi, S., Krishnan, A., Sohn, S., Roch, A.M., Schmidt, H., Kesterson, J., et al. DEEPEN: A negation detection system for clinical text incorporating dependency relation into NegEx. J Biomed Inform 54 (2015), 213–219.
    • (2015) J Biomed Inform , vol.54 , pp. 213-219
    • Mehrabi, S.1    Krishnan, A.2    Sohn, S.3    Roch, A.M.4    Schmidt, H.5    Kesterson, J.6
  • 42
    • 85016487612 scopus 로고    scopus 로고
    • NegAIT: A new parser for medical text simplification using morphological, sentential and double negation
    • Mukherjee, P., Leroy, G., Kauchak, D., Rajanarayanan, S., Romero Diaz, D.Y., Yuan, N.P., et al. NegAIT: A new parser for medical text simplification using morphological, sentential and double negation. J Biomed Inform 69 (2017), 55–62.
    • (2017) J Biomed Inform , vol.69 , pp. 55-62
    • Mukherjee, P.1    Leroy, G.2    Kauchak, D.3    Rajanarayanan, S.4    Romero Diaz, D.Y.5    Yuan, N.P.6


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