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Volumn 46, Issue D1, 2018, Pages D749-D753

TADB 2.0: An updated database of bacterial type II toxin-antitoxin loci

Author keywords

[No Author keywords available]

Indexed keywords

ANTITOXIN; BACTERIAL TOXIN; BACTERIAL TYPE II TOXIN; UNCLASSIFIED DRUG; VIRULENCE FACTOR; BACTERIAL RNA; SMALL UNTRANSLATED RNA;

EID: 85040908431     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkx1033     Document Type: Article
Times cited : (192)

References (28)
  • 1
    • 84872241785 scopus 로고    scopus 로고
    • Bacterial persistence and toxin-antitoxin loci
    • Gerdes, K., Maisonneuve, E. (2012) Bacterial persistence and toxin-antitoxin loci. Annu. Rev. Microbiol., 66, 103-123.
    • (2012) Annu. Rev. Microbiol. , vol.66 , pp. 103-123
    • Gerdes, K.1    Maisonneuve, E.2
  • 2
    • 85006247350 scopus 로고    scopus 로고
    • Mechanisms of bacterial persistence during stress and antibiotic exposure
    • Harms, A., Maisonneuve, E., Gerdes, K. (2016) Mechanisms of bacterial persistence during stress and antibiotic exposure. Science, 354, aaf4268-aaf4269.
    • (2016) Science , vol.354 , pp. aaf4268-aaf4269
    • Harms, A.1    Maisonneuve, E.2    Gerdes, K.3
  • 3
    • 80052486933 scopus 로고    scopus 로고
    • Recent advancements in toxin and antitoxin systems involved in bacterial programmed cell death
    • Hu, M.-X., Zhang, X., Li, E.-L., Feng, Y.-J. (2010) Recent advancements in toxin and antitoxin systems involved in bacterial programmed cell death. Int. J. Microbiol., 2010, 1-10.
    • (2010) Int. J. Microbiol. , vol.2010 , pp. 1-10
    • Hu, M.-X.1    Zhang, X.2    Li, E.-L.3    Feng, Y.-J.4
  • 5
    • 85020198556 scopus 로고    scopus 로고
    • Toxin-antitoxin systems and their role in disseminating and maintaining antimicrobial resistance
    • Yang, Q.E., Walsh, T.R. (2017) Toxin-antitoxin systems and their role in disseminating and maintaining antimicrobial resistance. FEMS Microbiol. Rev., 41, 343-353.
    • (2017) FEMS Microbiol. Rev. , vol.41 , pp. 343-353
    • Yang, Q.E.1    Walsh, T.R.2
  • 7
    • 84962495845 scopus 로고    scopus 로고
    • Toxin-antitoxin systems in bacterial growth arrest and persistence
    • Page, R., Peti, W. (2016) Toxin-antitoxin systems in bacterial growth arrest and persistence. Nat. Chem. Biol., 12, 208-214.
    • (2016) Nat. Chem. Biol. , vol.12 , pp. 208-214
    • Page, R.1    Peti, W.2
  • 10
    • 85014452658 scopus 로고    scopus 로고
    • Toxin-antitoxin systems: Reversible toxicity
    • Hall, A.M., Gollan, B., Helaine, S. (2017) Toxin-antitoxin systems: Reversible toxicity. Curr. Opin. Microbiol., 36, 102-110.
    • (2017) Curr. Opin. Microbiol. , vol.36 , pp. 102-110
    • Hall, A.M.1    Gollan, B.2    Helaine, S.3
  • 11
    • 39149110856 scopus 로고    scopus 로고
    • RASTA-Bacteria: A web-based tool for identifying toxin-antitoxin loci in prokaryotes
    • Sevin, E.W., Barloy-Hubler, F. (2007) RASTA-Bacteria: A web-based tool for identifying toxin-antitoxin loci in prokaryotes. Genome Biol., 8, R155.
    • (2007) Genome Biol. , vol.8 , pp. R155
    • Sevin, E.W.1    Barloy-Hubler, F.2
  • 13
    • 14244266086 scopus 로고    scopus 로고
    • Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes
    • Pandey, D.P. (2005) Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes. Nucleic Acids Res., 33, 966-976.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 966-976
    • Pandey, D.P.1
  • 14
    • 67649933665 scopus 로고    scopus 로고
    • Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes
    • Makarova, K.S., Wolf, Y.I., Koonin, E. V (2009) Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes. Biol. Direct, 4, 19.
    • (2009) Biol. Direct , vol.4 , pp. 19
    • Makarova, K.S.1    Wolf, Y.I.2    Koonin, E.V.3
  • 15
    • 34547844136 scopus 로고    scopus 로고
    • A Chado case study: An ontology-based modular schema for representing genome-associated biological information
    • Mungall, C.J., Emmert, D.B. (2007) A Chado case study: An ontology-based modular schema for representing genome-associated biological information. Bioinformatics, 23, i337-i346.
    • (2007) Bioinformatics , vol.23 , pp. i337-i346
    • Mungall, C.J.1    Emmert, D.B.2
  • 18
    • 85056521472 scopus 로고    scopus 로고
    • VRprofile: Gene-cluster-detection-based profiling of virulence and antibiotic resistance traits encoded within genome sequences of pathogenic bacteria
    • Li, J., Tai, C., Deng, Z., Zhong, W., He, Y., Ou, H.-Y. (2017) VRprofile: Gene-cluster-detection-based profiling of virulence and antibiotic resistance traits encoded within genome sequences of pathogenic bacteria. Brief. Bioinform., doi:10.1093/bib/bbw141.
    • (2017) Brief. Bioinform.
    • Li, J.1    Tai, C.2    Deng, Z.3    Zhong, W.4    He, Y.5    Ou, H.-Y.6
  • 19
    • 2942571207 scopus 로고    scopus 로고
    • Extensive genomic diversity in pathogenic Escherichia coli and Shigella strains revealed by comparative genomic hybridization microarray
    • Fukiya, S., Mizoguchi, H., Tobe, T., Mori, H. (2004) Extensive genomic diversity in pathogenic Escherichia coli and Shigella strains revealed by comparative genomic hybridization microarray. J. Bacteriol., 186, 3911-3921.
    • (2004) J. Bacteriol. , vol.186 , pp. 3911-3921
    • Fukiya, S.1    Mizoguchi, H.2    Tobe, T.3    Mori, H.4
  • 20
    • 77954265673 scopus 로고    scopus 로고
    • MGenomeSubtractor: A web-based tool for parallel in silico subtractive hybridization analysis of multiple bacterial genomes
    • Shao, Y., He, X., Harrison, E.M., Tai, C., Ou, H.-Y., Rajakumar, K., Deng, Z. (2010) mGenomeSubtractor: A web-based tool for parallel in silico subtractive hybridization analysis of multiple bacterial genomes. Nucleic Acids Res., 38, W194-W200.
    • (2010) Nucleic Acids Res. , vol.38 , pp. W194-W200
    • Shao, Y.1    He, X.2    Harrison, E.M.3    Tai, C.4    Ou, H.-Y.5    Rajakumar, K.6    Deng, Z.7
  • 21
    • 84983335611 scopus 로고    scopus 로고
    • Identification and characterization of chromosomal relBE toxin-antitoxin locus in Streptomycescattleya DSM46488
    • Li, P., Tai, C., Deng, Z., Gan, J., Oggioni, M.R., Ou, H.-Y. (2016) Identification and characterization of chromosomal relBE toxin-antitoxin locus in Streptomycescattleya DSM46488. Sci. Rep., 6, 32047.
    • (2016) Sci. Rep. , vol.6 , pp. 32047
    • Li, P.1    Tai, C.2    Deng, Z.3    Gan, J.4    Oggioni, M.R.5    Ou, H.-Y.6
  • 22
    • 84969915371 scopus 로고    scopus 로고
    • Prediction of type II toxin-antitoxin loci in Klebsiellapneumoniae genome sequences
    • Wei, Y.Q., Bi, D.X., Wei, D.Q., Ou, H.Y. (2016) Prediction of type II toxin-antitoxin loci in Klebsiellapneumoniae genome sequences. Interdiscip. Sci. Comput. Life Sci., 8, 143-149.
    • (2016) Interdiscip. Sci. Comput. Life Sci. , vol.8 , pp. 143-149
    • Wei, Y.Q.1    Bi, D.X.2    Wei, D.Q.3    Ou, H.Y.4
  • 24
    • 84987768346 scopus 로고    scopus 로고
    • Draft genome sequence of Acinetobacterbaumannii strain NCTC 13423, a multidrug-resistant clinical isolate
    • Michiels, J.E., Van den Bergh, B., Fauvart, M., Michiels, J. (2016) Draft genome sequence of Acinetobacterbaumannii strain NCTC 13423, a multidrug-resistant clinical isolate. Stand. Genomic Sci., 11, 57.
    • (2016) Stand. Genomic Sci. , vol.11 , pp. 57
    • Michiels, J.E.1    Van Den Bergh, B.2    Fauvart, M.3    Michiels, J.4
  • 25
    • 85014964805 scopus 로고    scopus 로고
    • Carriage of type II toxin-antitoxin systems by the growing group of IncX plasmids
    • Bustamante, P., Iredell, J.R. (2017) Carriage of type II toxin-antitoxin systems by the growing group of IncX plasmids. Plasmid, 91, 19-27.
    • (2017) Plasmid , vol.91 , pp. 19-27
    • Bustamante, P.1    Iredell, J.R.2
  • 26
    • 80052196405 scopus 로고    scopus 로고
    • Diversity of bacterial type II toxin-antitoxin systems: A comprehensive search and functional analysis of novel families
    • Leplae, R., Geeraerts, D., Hallez, R., Guglielmini, J., Drèze, P., Van Melderen, L. (2011) Diversity of bacterial type II toxin-antitoxin systems: A comprehensive search and functional analysis of novel families. Nucleic Acids Res., 39, 5513-5525.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 5513-5525
    • Leplae, R.1    Geeraerts, D.2    Hallez, R.3    Guglielmini, J.4    Drèze, P.5    Van Melderen, L.6
  • 27
    • 63449105641 scopus 로고    scopus 로고
    • A toxin-antitoxin system promotes the maintenance of an integrative conjugative element
    • Wozniak, R.A.F., Waldor, M.K. (2009) A toxin-antitoxin system promotes the maintenance of an integrative conjugative element. PLoS Genet., 5, e1000439.
    • (2009) PLoS Genet. , vol.5 , pp. e1000439
    • Wozniak, R.A.F.1    Waldor, M.K.2
  • 28
    • 63449102873 scopus 로고    scopus 로고
    • Bacterial toxin-antitoxin systems: More than selfish entities
    • Van Melderen, L., Saavedra De Bast, M. (2009) Bacterial toxin-antitoxin systems: More than selfish entities PLoS Genet., 5, e1000437.
    • (2009) PLoS Genet. , vol.5 , pp. e1000437
    • Van Melderen, L.1    Saavedra De Bast, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.