Lactobacillus kosoi sp. nov., a fructophilic species isolated from kôso, a Japanese sugar-vegetable fermented beverage

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 111, Issue 7, 2018, Pages 1149-1156

  Chiou, Tai Ying ^a   Suda, Wataru ^b,c   Oshima, Kenshiro ^b   Hattori, Masahira ^b,d   Matsuzaki, Chiaki ^e   Yamamoto, Kenji ^e   Takahashi, Tomoya ^f  

^a KITAMI INSTITUTE OF TECHNOLOGY   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

^c KEIO UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^d WASEDA UNIVERSITY   (Japan)

^e ISHIKAWA PREFECTURAL UNIVERSITY   (Japan)

^f AOB Keioh Group Corporation   (Japan)

Author keywords

16S rRNA gene; Fructophilic lactic acid bacteria; K so; Lactobacillus kosoi sp. nov; Plyphasic taxonomy

Indexed keywords

GLYCEROPHOSPHOLIPID; GLYCOLIPID; LYSOPHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLETHANOLAMINE; UNCLASSIFIED DRUG; BACTERIAL DNA; CARBOHYDRATE; FATTY ACID; FRUCTOSE; RNA 16S;

AMINO ACID COMPOSITION; ARTICLE; BACTERIAL GENETICS; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; CONTROLLED STUDY; FERMENTATION; FOOD PROCESSING; GRAM POSITIVE BACTERIUM; LACTOBACILLUS APINORUM; LACTOBACILLUS KOSOI; LACTOBACILLUS OZENSIS; LIPID ANALYSIS; NEW SPECIES; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; ANALYSIS; BEVERAGE; CHEMISTRY; CLASSIFICATION; DNA BASE COMPOSITION; FERMENTED PRODUCT; GENETICS; ISOLATION AND PURIFICATION; JAPAN; LACTOBACILLUS; METABOLISM; MICROBIOLOGY; PH; VEGETABLE;

BASE COMPOSITION; BEVERAGES; DNA, BACTERIAL; FATTY ACIDS; FERMENTATION; FERMENTED FOODS; FRUCTOSE; HYDROGEN-ION CONCENTRATION; JAPAN; LACTOBACILLUS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SUGARS; VEGETABLES;

EID: 85040643851     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-018-1019-7     Document Type: Article

References (35)

1. Button DK, Schut F, Quang P, Martin R, Robertson BR (1993) Viability and isolation of marine bacteria by dilution culture: theory, procedures, and initial results. Appl Environ Microbiol 59:881–891
2. Chiou T-Y, Suda W, Oshima K, Hattori M, Takahashi T (2017) Changes in the bacterial community in the fermentation process of kôso, a Japanese sugar-vegetable fermented beverage. Biosci Biotechnol Biochem 81(2):403–410
3. Collins MD, Jones D (1981) Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implication. Microbiol Rev 45:316–354
4. Drucker DB, Megson G, Harty DW, Riba I (1995) Gaskell SJ. Phospholipids of Lactobacillus spp. J Bacteriol 177:6304–6308
5. Edwards CG, Haag KM, Collins MD, Hutson RA, Huang YC, Haag KM (1998) Lactobacillus kunkeei sp. nov.: a spoilage organism associated with grape juice fermentations. J Appl Microbiol 84:698–702
6. Endo A (2012) Fructophilic lactic acid bacteria inhabit fructose-rich niches in nature. Microb Ecol Health Dis. 10.3402/mehd.v23i0.18563
7. Endo A, Irisawa T, Futagawa-Endo Y, Takano K, du Toit M, Okada S, Dicks LM (2012) Characterization and emended description of Lactobacillus kunkeei as a fructophilic lactic acid bacterium. Int J Syst Evol Microbiol 62:500–504
8. Engels V, Georgi T, Wendisch VF (2008) ScrB (Cg2927) is a sucrose-6-phosphate hydrolase essential for sucrose utilization by Corynebacterium glutamicum. FEMS Microbiol Lett 289:80–89
9. Felsenstein J (1981) Evolutionary trees from gene frequencies and quantitative characters: finding maximum likelihood estimates. Evolution 35:1229–1242
10. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791
11. Kawasaki S, Kurosawa K, Miyazaki M, Sakamoto M, Ohkuma M, Niimura Y (2011) Lactobacillus ozensis sp. nov., isolated from mountain flowers. Int J Syst Evol Microbiol 61:2435–2438
12. Kim M, Oh HS, Park SC, Chun J (2014) Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 64:346–351
13. Komagata K, Suzuki K (1987) Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 19:161–207
14. Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33:1870–1874
15. Lee I, Kim YO, Park SC, Chun J (2016) OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int J Syst Evol Microbiol 66:1100–1103
16. Liang ZQ, Srinivasan S, Kim YJ, Kim HB, Wang HT, Yang DC (2011) Lactobacillus kimchicus sp. nov., a β-glucosidase-producing bacterium isolated from kimchi. Int J Syst Evol Microbiol 61:894–897
17. Maeno S, Dicks L, Nakagawa J, Endo A (2017) Lactobacillus apinorum belongs to the fructophilic lactic acid bacteria. Biosci Microbiota Food Health 36:147–149
18. Matsuzaki C, Kamishima K, Matsumoto K, Koga H, Katayama T, Yamamoto K, Hisa K (2014) Immunomodulating activity of exopolysaccharide-producing Leuconostoc mesenteroides strain NTM048 from green peas. J Appl Microbiol 116:980–989
19. Mattarelli P, Holzapfel W, Franz CM, Endo A, Felis GE, Hammes W, Pot B, Dicks L, Dellaglio F (2014) Recommended minimal standards for description of new taxa of the genera Bifidobacterium, Lactobacillus and related genera. Int J Syst Evol Microbiol 64:1434–1451
20. McFrederick QS, Thomas JM, Neff JL, Vuong HQ, Russell KA, Hale AR, Mueller UG (2017) Flowers and wild megachilid bees share microbes. Microb Ecol 73(1):188–200
21. Minnikin DE, Collins MD, Goodfellow M (1979) Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47:87–95. 10.1111/j.1365-2672.1979.tb01172.x
22. Naser SM, Dawyndt P, Hoste B, Gevers D, Vandemeulebroecke K, Cleenwerck I, Vancanneyt M, Swings J (2007) Identification of lactobacilli by pheS and rpoA gene sequence analyses. Int J Syst Evol Microbiol 57:2777–2789
23. Neveling DP, Endo A, Dicks LM (2012) Fructophilic Lactobacillus kunkeei and Lactobacillus brevis isolated from fresh flowers, bees and bee-hives. Curr Microbiol 65:507–515
24. Nishijima M, Araki-Sakai M, Sano H (1997) Identification of isoprenoid quinones by frit-FAB liquid chromatography–mass spectrometry for the chemotaxonomy of microorganisms. J Microbiol Methods 28:113–122
25. Olofsson TC, Alsterfjord M, Nilson B, Butler E, Vásquez A (2014) Lactobacillus apinorum sp. nov., Lactobacillus mellifer sp. nov., Lactobacillus mellis sp. nov., Lactobacillus melliventris sp. nov., Lactobacillus kimbladii sp. nov., Lactobacillus helsingborgensis sp. nov. and Lactobacillus kullabergensis sp. nov., isolated from the honey stomach of the honeybee Apis mellifera. Int J Syst Evol Microbiol 64:3109–3119
26. Rosselló-Móra R, Trujillo ME, Sutcliffe IC (2017) Introducing a digital protologue: a timely move towards a database-driven systematics of archaea and bacteria. Antonie Van Leeuwenhoek 110:455–456
27. Rouse S, Harnett D, Vaughan A, van Sinderen D (2008) Lactic acid bacteria with potential to eliminate fungal spoilage in foods. J Appl Microbiol 104:915–923
28. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101, MIDI Inc., Newark
29. Schillinger U, Lücke FK (1987) Identification of lactobacilli from meat and meat products. Food Microbiol 4:199–208
30. Schleifer KH, Kandler O (1972) Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36:407–477
31. Seemann T (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics 30:2068–2069
32. Simu K, Hagström Å (2004) Oligotrophic bacterioplankton with a novel single-cell life strategy. Appl Environ Microbiol 70:2445–2451
33. Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512–526
34. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 11(22):4673–4680
35. Yoon SH, Ha SM, Lim JM, Kwon SJ, Chun J (2017) A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie Van Leeuwenhoek 110:1281–1286