-
1
-
-
0033567144
-
Genetic characterization of the pathogenic influenza A/Goose/Guangdong/1/96 (H5N1) virus: Similarity of its hemagglutinin gene to those of H5N1 viruses from the 1997 outbreaks in Hong Kong
-
Xu X, Subbarao, Cox NJ, Guo Y. Genetic characterization of the pathogenic influenza A/Goose/Guangdong/1/96 (H5N1) virus: similarity of its hemagglutinin gene to those of H5N1 viruses from the 1997 outbreaks in Hong Kong. Virology. 1999;261:15-9. http://dx.doi.org/10.1006/viro.1999.9820
-
(1999)
Virology
, vol.261
, pp. 15-19
-
-
Xu, X.1
Subbaraocox, N.J.2
Guo, Y.3
-
2
-
-
4644226853
-
Investigation of outbreaks of highly pathogenic H5N1 avian influenza in waterfowl and wild birds in Hong Kong in late 2002
-
Ellis TM, Bousfield RB, Bissett LA, Dyrting KC, Luk GS, Tsim ST, et al. Investigation of outbreaks of highly pathogenic H5N1 avian influenza in waterfowl and wild birds in Hong Kong in late 2002. Avian Pathol. 2004;33:492-505. http://dx.doi.org/10.1080/03079450400003601
-
(2004)
Avian Pathol
, vol.33
, pp. 492-505
-
-
Ellis, T.M.1
Bousfield, R.B.2
Bissett, L.A.3
Dyrting, K.C.4
Luk, G.S.5
Tsim, S.T.6
-
3
-
-
33646033777
-
Global patterns of influenza a virus in wild birds
-
Olsen B, Munster VJ, Wallensten A, Waldenström J, Osterhaus AD, Fouchier RA. Global patterns of influenza a virus in wild birds. Science. 2006;312:384-8. http://dx.doi.org/10.1126/science.1122438
-
(2006)
Science
, vol.312
, pp. 384-388
-
-
Olsen, B.1
Munster, V.J.2
Wallensten, A.3
Waldenström, J.4
Osterhaus, A.D.5
Fouchier, R.A.6
-
4
-
-
33845889525
-
Predicting the global spread of H5N1 avian influenza
-
Kilpatrick AM, Chmura AA, Gibbons DW, Fleischer RC, Marra PP, Daszak P. Predicting the global spread of H5N1 avian influenza. Proc Natl Acad Sci U S A. 2006;103:19368-73. http://dx.doi.org/10.1073/pnas.0609227103
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 19368-19373
-
-
Kilpatrick, A.M.1
Chmura, A.A.2
Gibbons, D.W.3
Fleischer, R.C.4
Marra, P.P.5
Daszak, P.6
-
5
-
-
78651107613
-
First reported incursion of highly pathogenic notifiable avian influenza A H5N1 viruses from clade 2.3.2 into European poultry
-
Reid SM, Shell WM, Barboi G, Onita I, Turcitu M, Cioranu R, et al. First reported incursion of highly pathogenic notifiable avian influenza A H5N1 viruses from clade 2.3.2 into European poultry. Transbound Emerg Dis. 2011;58:76-8. http://dx.doi.org/10.1111/j.1865-1682.2010.01175.x
-
(2011)
Transbound Emerg Dis
, vol.58
, pp. 76-78
-
-
Reid, S.M.1
Shell, W.M.2
Barboi, G.3
Onita, I.4
Turcitu, M.5
Cioranu, R.6
-
6
-
-
84929591129
-
Intercontinental spread of Asian-origin H5N8 to North America through Beringia by migratory birds
-
Lee DH, Torchetti MK, Winker K, Ip HS, Song CS, Swayne DE. Intercontinental spread of Asian-origin H5N8 to North America through Beringia by migratory birds. J Virol. 2015;89:6521-4. http://dx.doi.org/10.1128/JVI.00728-15
-
(2015)
J Virol
, vol.89
, pp. 6521-6524
-
-
Lee, D.H.1
Torchetti, M.K.2
Winker, K.3
Ip, H.S.4
Song, C.S.5
Swayne, D.E.6
-
7
-
-
84991691584
-
Role for migratory wild birds in the global spread of avian influenza H5N8
-
Global Consortium for H5N8 and Related Influenza Viruses. Role for migratory wild birds in the global spread of avian influenza H5N8. Science. 2016;354:213-7. http://dx.doi.org/10.1126/science.aaf8852
-
(2016)
Science
, vol.354
, pp. 213-217
-
-
-
8
-
-
84928012490
-
Full-genome sequence of influenza A(H5N8) virus in poultry linked to sequences of strains from Asia, the Netherlands, 2014
-
Bouwstra R, Heutink R, Bossers A, Harders F, Koch G, Elbers A. Full-genome sequence of influenza A(H5N8) virus in poultry linked to sequences of strains from Asia, the Netherlands, 2014. Emerg Infect Dis. 2015;21:872-4. http://dx.doi.org/10.3201/eid2105.141839
-
(2015)
Emerg Infect Dis
, vol.21
, pp. 872-874
-
-
Bouwstra, R.1
Heutink, R.2
Bossers, A.3
Harders, F.4
Koch, G.5
Elbers, A.6
-
9
-
-
84937032611
-
Phylogenetic analysis of highly pathogenic avian influenza A(H5N8) virus outbreak strains provides evidence for four separate introductions and one between-poultry farm transmission in the Netherlands, November 2014
-
Bouwstra RJ, Koch G, Heutink R, Harders F, van der Spek A, Elbers AR, et al. Phylogenetic analysis of highly pathogenic avian influenza A(H5N8) virus outbreak strains provides evidence for four separate introductions and one between-poultry farm transmission in the Netherlands, November 2014. Euro Surveill. 2015;20:21174. http://dx.doi.org/10.2807/1560-7917.ES2015.20.26.21174
-
(2015)
Euro Surveill
, vol.20
, pp. 21174
-
-
Bouwstra, R.J.1
Koch, G.2
Heutink, R.3
Harders, F.4
Van Der Spek, A.5
Elbers, A.R.6
-
10
-
-
85009966939
-
Novel reassortant clade 2.3.4.4 avian influenza A(H5N8) virus in wild aquatic birds, Russia, 2016
-
Lee DH, Sharshov K, Swayne DE, Kurskaya O, Sobolev I, Kabilov M, et al. Novel reassortant clade 2.3.4.4 avian influenza A(H5N8) virus in wild aquatic birds, Russia, 2016. Emerg Infect Dis. 2017;23:359-60. http://dx.doi.org/10.3201/eid2302.161252
-
(2017)
Emerg Infect Dis
, vol.23
, pp. 359-360
-
-
Lee, D.H.1
Sharshov, K.2
Swayne, D.E.3
Kurskaya, O.4
Sobolev, I.5
Kabilov, M.6
-
11
-
-
34247610005
-
Validated H5 Eurasian real-time reverse transcriptase-polymerase chain reaction and its application in H5N1 outbreaks in 2005-2006
-
Slomka MJ, Pavlidis T, Banks J, Shell W, McNally A, Essen S, et al. Validated H5 Eurasian real-time reverse transcriptase-polymerase chain reaction and its application in H5N1 outbreaks in 2005-2006. Avian Dis. 2007;51(Suppl):373-7. http://dx.doi.org/10.1637/7664-060906R1.1
-
(2007)
Avian Dis
, vol.51
, pp. 373-377
-
-
Slomka, M.J.1
Pavlidis, T.2
Banks, J.3
Shell, W.4
McNally, A.5
Essen, S.6
-
12
-
-
84892472510
-
Emergence of the virulence-associated PB2 E627K substitution in a fatal human case of highly pathogenic avian influenza virus A(H7N7) infection as determined by Illumina ultra-deep sequencing
-
Jonges M, Welkers MR, Jeeninga RE, Meijer A, Schneeberger P, Fouchier RA, et al. Emergence of the virulence-associated PB2 E627K substitution in a fatal human case of highly pathogenic avian influenza virus A(H7N7) infection as determined by Illumina ultra-deep sequencing. J Virol. 2014;88:1694-702. http://dx.doi.org/10.1128/JVI.02044-13
-
(2014)
J Virol
, vol.88
, pp. 1694-1702
-
-
Jonges, M.1
Welkers, M.R.2
Jeeninga, R.E.3
Meijer, A.4
Schneeberger, P.5
Fouchier, R.A.6
-
13
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
Li W, Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006;22:1658-9. http://dx.doi.org/10.1093/bioinformatics/btl158
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
14
-
-
84890330527
-
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0
-
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol. 2013;30:2725-9. http://dx.doi.org/10.1093/molbev/mst197
-
(2013)
Mol Biol Evol
, vol.30
, pp. 2725-2729
-
-
Tamura, K.1
Stecher, G.2
Peterson, D.3
Filipski, A.4
Kumar, S.5
-
15
-
-
79959858420
-
Evolutionary analysis of inter-farm transmission dynamics in a highly pathogenic avian influenza epidemic
-
Bataille A, van der Meer F, Stegeman A, Koch G. Evolutionary analysis of inter-farm transmission dynamics in a highly pathogenic avian influenza epidemic. PLoS Pathog. 2011;7:e1002094. http://dx.doi.org/10.1371/journal.ppat.1002094
-
(2011)
Plos Pathog
, pp. 7
-
-
Bataille, A.1
Van Der Meer, F.2
Stegeman, A.3
Koch, G.4
-
16
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa M, Kishino H, Yano T. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol. 1985;22:160-74. http://dx.doi.org/10.1007/BF02101694
-
(1985)
J Mol Evol
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
17
-
-
0036021407
-
Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
-
Drummond AJ, Nicholls GK, Rodrigo AG, Solomon W. Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics. 2002;161:1307-20.
-
(2002)
Genetics
, vol.161
, pp. 1307-1320
-
-
Drummond, A.J.1
Nicholls, G.K.2
Rodrigo, A.G.3
Solomon, W.4
-
18
-
-
84864530626
-
Bayesian phylogenetics with BEAUti and the BEAST 1.7
-
Drummond AJ, Suchard MA, Xie D, Rambaut A. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol. 2012;29:1969-73. http://dx.doi.org/10.1093/molbev/mss075
-
(2012)
Mol Biol Evol
, vol.29
, pp. 1969-1973
-
-
Drummond, A.J.1
Suchard, M.A.2
Xie, D.3
Rambaut, A.4
-
19
-
-
85035038876
-
-
FigTree. 201. v.1.4.2: tree drawing tool [cited 2016
-
Rambaut A. FigTree. 201. v.1.4.2: tree drawing tool [cited 2016 10 4] http://tree.bio.ed.ac.uk/software/figtree
-
-
-
Rambaut, A.1
-
20
-
-
85014768147
-
Interactive tree of life (ITOL) v3: An online tool for the display and annotation of phylogenetic and other trees
-
Letunic I, Bork P. Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees. Nucleic Acids Res. 2016;44(W1):W242-5. http://dx.doi.org/10.1093/nar/gkw290
-
(2016)
Nucleic Acids Res
, vol.44
, Issue.W1
-
-
Letunic, I.1
Bork, P.2
-
21
-
-
85035011333
-
Deaths among wild birds during highly pathogenic avian influenza A(H5N8) virus outbreak, the Netherlands
-
Kleyheeg E, Slaterus R, Bodewes R, Rijks JM, Spierenburg M, Beerens N, et al. Deaths among wild birds during highly pathogenic avian influenza A(H5N8) virus outbreak, the Netherlands. Emerg Infect Dis. 2017;23:2050-4.
-
(2017)
Emerg Infect Dis
, vol.23
, pp. 2050-2054
-
-
Kleyheeg, E.1
Slaterus, R.2
Bodewes, R.3
Rijks, J.M.4
Spierenburg, M.5
Beerens, N.6
-
22
-
-
85015787303
-
Outbreaks among wild birds and domestic poultry caused by reassorted influenza A(H5N8) clade 2.3.4.4 viruses, Germany, 2016
-
Pohlmann A, Starick E, Harder T, Grund C, Höper D, Globig A, et al. Outbreaks among wild birds and domestic poultry caused by reassorted influenza A(H5N8) clade 2.3.4.4 viruses, Germany, 2016. Emerg Infect Dis. 2017;23:633-6. http://dx.doi.org/10.3201/eid2304.161949
-
(2017)
Emerg Infect Dis
, vol.23
, pp. 633-636
-
-
Pohlmann, A.1
Starick, E.2
Harder, T.3
Grund, C.4
Höper, D.5
Globig, A.6
-
23
-
-
85029628166
-
Genetic diversity of highly pathogenic avian influenza A(H5N8/H5N5) viruses in Italy, 2016-17
-
Fusaro A, Monne I, Mulatti P, Zecchin B, Bonfanti L, Ormelli S, et al. Genetic diversity of highly pathogenic avian influenza A(H5N8/H5N5) viruses in Italy, 2016-17. Emerg Infect Dis. 2017;23:1543-7. http://dx.doi.org/10.3201/eid2309.170539
-
(2017)
Emerg Infect Dis
, vol.23
, pp. 1543-1547
-
-
Fusaro, A.1
Monne, I.2
Mulatti, P.3
Zecchin, B.4
Bonfanti, L.5
Ormelli, S.6
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