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Volumn 43, Issue 3, 2017, Pages 349-358.e4

The Zygotic Transition Is Initiated in Unicellular Plant Zygotes with Asymmetric Activation of Parental Genomes

Author keywords

fertilization; genome activation; maternal to zygotic transition; plant development; plant reproduction

Indexed keywords

TRANSCRIPTOME;

EID: 85032619375     PISSN: 15345807     EISSN: 18781551     Source Type: Journal    
DOI: 10.1016/j.devcel.2017.10.005     Document Type: Article
Times cited : (70)

References (50)
  • 1
    • 84924322573 scopus 로고    scopus 로고
    • Histone titration against the genome sets the DNA-to-cytoplasm threshold for the Xenopus midblastula transition
    • Amodeo, A.A., Jukam, D., Straight, A.F., Skotheim, J.M., Histone titration against the genome sets the DNA-to-cytoplasm threshold for the Xenopus midblastula transition. Proc. Natl. Acad. Sci. USA 112 (2015), E1086–E1095.
    • (2015) Proc. Natl. Acad. Sci. USA , vol.112 , pp. E1086-E1095
    • Amodeo, A.A.1    Jukam, D.2    Straight, A.F.3    Skotheim, J.M.4
  • 2
    • 84889090214 scopus 로고    scopus 로고
    • Transcriptomes of isolated Oryza sativa gametes characterized by deep sequencing: evidence for distinct sex-dependent chromatin and epigenetic states before fertilization
    • Anderson, S.N., Johnson, C.S., Jones, D.S., Conrad, L.J., Gou, X., Russell, S.D., Sundaresan, V., Transcriptomes of isolated Oryza sativa gametes characterized by deep sequencing: evidence for distinct sex-dependent chromatin and epigenetic states before fertilization. Plant J. 76 (2013), 729–741.
    • (2013) Plant J. , vol.76 , pp. 729-741
    • Anderson, S.N.1    Johnson, C.S.2    Jones, D.S.3    Conrad, L.J.4    Gou, X.5    Russell, S.D.6    Sundaresan, V.7
  • 4
    • 84946471477 scopus 로고    scopus 로고
    • The maternal-to-zygotic transition in flowering plants: evidence, mechanisms, and plasticity
    • Baroux, C., Grossniklaus, U., The maternal-to-zygotic transition in flowering plants: evidence, mechanisms, and plasticity. Curr. Top. Dev. Biol. 113 (2015), 351–371.
    • (2015) Curr. Top. Dev. Biol. , vol.113 , pp. 351-371
    • Baroux, C.1    Grossniklaus, U.2
  • 5
    • 62449119033 scopus 로고    scopus 로고
    • Paternal control of embryonic patterning in Arabidopsis thaliana
    • Bayer, M., Nawy, T., Giglione, C., Galli, M., Meinnel, T., Lukowitz, W., Paternal control of embryonic patterning in Arabidopsis thaliana. Science 323 (2009), 1485–1488.
    • (2009) Science , vol.323 , pp. 1485-1488
    • Bayer, M.1    Nawy, T.2    Giglione, C.3    Galli, M.4    Meinnel, T.5    Lukowitz, W.6
  • 6
    • 84946485961 scopus 로고    scopus 로고
    • Coordinating cell cycle remodeling with transcriptional activation at the Drosophila MBT
    • Blythe, S.A., Wieschaus, E.F., Coordinating cell cycle remodeling with transcriptional activation at the Drosophila MBT. Curr. Top. Dev. Biol. 113 (2015), 113–148.
    • (2015) Curr. Top. Dev. Biol. , vol.113 , pp. 113-148
    • Blythe, S.A.1    Wieschaus, E.F.2
  • 8
    • 44449154262 scopus 로고    scopus 로고
    • Differential expression of WOX genes mediates apical-basal axis formation in the Arabidopsis embryo
    • Breuninger, H., Rikirsch, E., Hermann, M., Ueda, M., Laux, T., Differential expression of WOX genes mediates apical-basal axis formation in the Arabidopsis embryo. Dev. Cell 14 (2008), 867–876.
    • (2008) Dev. Cell , vol.14 , pp. 867-876
    • Breuninger, H.1    Rikirsch, E.2    Hermann, M.3    Ueda, M.4    Laux, T.5
  • 10
    • 85011000155 scopus 로고    scopus 로고
    • From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline
    • Chen, Y., Lun, A.T., Smyth, G.K., From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline. F1000Res., 5, 2016, 1438.
    • (2016) F1000Res. , vol.5 , pp. 1438
    • Chen, Y.1    Lun, A.T.2    Smyth, G.K.3
  • 11
    • 84882919775 scopus 로고    scopus 로고
    • Titration of four replication factors is essential for the Xenopus laevis midblastula transition
    • Collart, C., Allen, G.E., Bradshaw, C.R., Smith, J.C., Zegerman, P., Titration of four replication factors is essential for the Xenopus laevis midblastula transition. Science 341 (2013), 893–896.
    • (2013) Science , vol.341 , pp. 893-896
    • Collart, C.1    Allen, G.E.2    Bradshaw, C.R.3    Smith, J.C.4    Zegerman, P.5
  • 12
    • 84941236951 scopus 로고    scopus 로고
    • A parthenogenesis gene of apomict origin elicits embryo formation from unfertilized eggs in a sexual plant
    • Conner, J.A., Mookkan, M., Huo, H., Chae, K., Ozias-Akins, P., A parthenogenesis gene of apomict origin elicits embryo formation from unfertilized eggs in a sexual plant. Proc. Natl. Acad. Sci. USA 112 (2015), 11205–11210.
    • (2015) Proc. Natl. Acad. Sci. USA , vol.112 , pp. 11205-11210
    • Conner, J.A.1    Mookkan, M.2    Huo, H.3    Chae, K.4    Ozias-Akins, P.5
  • 13
    • 85013848959 scopus 로고    scopus 로고
    • Haploid embryo production in rice and maize induced by PsASGR-BBML transgenes
    • Conner, J.A., Podio, M., Ozias-Akins, P., Haploid embryo production in rice and maize induced by PsASGR-BBML transgenes. Plant Reprod. 30 (2017), 41–52.
    • (2017) Plant Reprod. , vol.30 , pp. 41-52
    • Conner, J.A.1    Podio, M.2    Ozias-Akins, P.3
  • 14
    • 84908431582 scopus 로고    scopus 로고
    • Non-equivalent contributions of maternal and paternal genomes to early plant embryogenesis
    • Del Toro-De Leon, G., Garcia-Aguilar, M., Gillmor, C.S., Non-equivalent contributions of maternal and paternal genomes to early plant embryogenesis. Nature 514 (2014), 624–627.
    • (2014) Nature , vol.514 , pp. 624-627
    • Del Toro-De Leon, G.1    Garcia-Aguilar, M.2    Gillmor, C.S.3
  • 16
    • 84979932097 scopus 로고    scopus 로고
    • Cytological observation of double fertilization and its duration in Oryza sativa
    • Ding, J.T., Shen, J.H., Li, W., Yang, H., Cytological observation of double fertilization and its duration in Oryza sativa. Bull. Bot. 44 (2009), 473–483.
    • (2009) Bull. Bot. , vol.44 , pp. 473-483
    • Ding, J.T.1    Shen, J.H.2    Li, W.3    Yang, H.4
  • 17
    • 77954299992 scopus 로고    scopus 로고
    • agriGO: a GO analysis toolkit for the agricultural community
    • Du, Z., Zhou, X., Ling, Y., Zhang, Z., Su, Z., agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res. 38 (2010), W64–W70.
    • (2010) Nucleic Acids Res. , vol.38 , pp. W64-W70
    • Du, Z.1    Zhou, X.2    Ling, Y.3    Zhang, Z.4    Su, Z.5
  • 18
    • 84899474340 scopus 로고    scopus 로고
    • Haplotype-based variant detection from short-read sequencing
    • arXiv:12073907v2
    • Garrison, E., Marth, G., Haplotype-based variant detection from short-read sequencing. arXiv, 2012 arXiv:12073907v2.
    • (2012) arXiv
    • Garrison, E.1    Marth, G.2
  • 19
    • 85032615498 scopus 로고    scopus 로고
    • The qPCR data statistical analysis. Integromics White Paper.
    • Goni, R., García, P., and Foissac, S. (2009). The qPCR data statistical analysis. Integromics White Paper. 1–9.
    • (2009) , pp. 1-9
    • Goni, R.1    García, P.2    Foissac, S.3
  • 20
    • 1242352556 scopus 로고    scopus 로고
    • Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana
    • Haecker, A., Gross-Hardt, R., Geiges, B., Sarkar, A., Breuninger, H., Herrmann, M., Laux, T., Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana. Development 131 (2004), 657–668.
    • (2004) Development , vol.131 , pp. 657-668
    • Haecker, A.1    Gross-Hardt, R.2    Geiges, B.3    Sarkar, A.4    Breuninger, H.5    Herrmann, M.6    Laux, T.7
  • 22
    • 34250176870 scopus 로고    scopus 로고
    • Distinct dynamics of HISTONE3 variants between the two fertilization products in plants
    • Ingouff, M., Hamamura, Y., Gourgues, M., Higashiyama, T., Berger, F., Distinct dynamics of HISTONE3 variants between the two fertilization products in plants. Curr. Biol. 17 (2007), 1032–1037.
    • (2007) Curr. Biol. , vol.17 , pp. 1032-1037
    • Ingouff, M.1    Hamamura, Y.2    Gourgues, M.3    Higashiyama, T.4    Berger, F.5
  • 23
    • 33845634412 scopus 로고    scopus 로고
    • Cell cycle regulation in plant development
    • Inze, D., De Veylder, L., Cell cycle regulation in plant development. Annu. Rev. Genet. 40 (2006), 77–105.
    • (2006) Annu. Rev. Genet. , vol.40 , pp. 77-105
    • Inze, D.1    De Veylder, L.2
  • 25
    • 84875752131 scopus 로고    scopus 로고
    • Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways
    • Khanday, I., Yadav, S.R., Vijayraghavan, U., Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways. Plant Physiol. 161 (2013), 1970–1983.
    • (2013) Plant Physiol. , vol.161 , pp. 1970-1983
    • Khanday, I.1    Yadav, S.R.2    Vijayraghavan, U.3
  • 26
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim, D., Pertea, G., Trapnell, C., Pimentel, H., Kelley, R., Salzberg, S.L., TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol., 14, 2013, R36.
    • (2013) Genome Biol. , vol.14 , pp. R36
    • Kim, D.1    Pertea, G.2    Trapnell, C.3    Pimentel, H.4    Kelley, R.5    Salzberg, S.L.6
  • 27
    • 84945175620 scopus 로고    scopus 로고
    • The isolation of early nuclear endosperm of Oryza sativa to facilitate gene expression analysis and screening imprinted genes
    • Kuang, Q., Yu, X., Peng, X., Sun, M.X., The isolation of early nuclear endosperm of Oryza sativa to facilitate gene expression analysis and screening imprinted genes. Plant Methods, 11, 2015, 49.
    • (2015) Plant Methods , vol.11 , pp. 49
    • Kuang, Q.1    Yu, X.2    Peng, X.3    Sun, M.X.4
  • 29
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B., Salzberg, S.L., Fast gapped-read alignment with Bowtie 2. Nat. Methods 9 (2012), 357–359.
    • (2012) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 30
    • 84964314537 scopus 로고    scopus 로고
    • Zygotic genome activation during the maternal-to-zygotic transition
    • Lee, M.T., Bonneau, A.R., Giraldez, A.J., Zygotic genome activation during the maternal-to-zygotic transition. Annu. Rev. Cell Dev. Biol. 30 (2014), 581–613.
    • (2014) Annu. Rev. Cell Dev. Biol. , vol.30 , pp. 581-613
    • Lee, M.T.1    Bonneau, A.R.2    Giraldez, A.J.3
  • 34
    • 34548433964 scopus 로고    scopus 로고
    • Marking histone H3 variants: how, when and why?
    • Loyola, A., Almouzni, G., Marking histone H3 variants: how, when and why?. Trends Biochem. Sci. 32 (2007), 425–433.
    • (2007) Trends Biochem. Sci. , vol.32 , pp. 425-433
    • Loyola, A.1    Almouzni, G.2
  • 35
    • 0035999895 scopus 로고    scopus 로고
    • Synchronous Arabidopsis suspension cultures for analysis of cell-cycle gene activity
    • Menges, M., Murray, J.A., Synchronous Arabidopsis suspension cultures for analysis of cell-cycle gene activity. Plant J. 30 (2002), 203–212.
    • (2002) Plant J. , vol.30 , pp. 203-212
    • Menges, M.1    Murray, J.A.2
  • 36
    • 84856473900 scopus 로고    scopus 로고
    • Maternal and paternal genomes contribute equally to the transcriptome of early plant embryos
    • Nodine, M.D., Bartel, D.P., Maternal and paternal genomes contribute equally to the transcriptome of early plant embryos. Nature 482 (2012), 94–97.
    • (2012) Nature , vol.482 , pp. 94-97
    • Nodine, M.D.1    Bartel, D.P.2
  • 38
    • 84890723656 scopus 로고    scopus 로고
    • Inferring the choreography of parental genomes during fertilization from ultralarge-scale whole-transcriptome analysis
    • Park, S.J., Komata, M., Inoue, F., Yamada, K., Nakai, K., Ohsugi, M., Shirahige, K., Inferring the choreography of parental genomes during fertilization from ultralarge-scale whole-transcriptome analysis. Genes Dev. 27 (2013), 2736–2748.
    • (2013) Genes Dev. , vol.27 , pp. 2736-2748
    • Park, S.J.1    Komata, M.2    Inoue, F.3    Yamada, K.4    Nakai, K.5    Ohsugi, M.6    Shirahige, K.7
  • 39
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson, M.D., McCarthy, D.J., Smyth, G.K., edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26 (2010), 139–140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 41
    • 85019014146 scopus 로고    scopus 로고
    • Widespread contamination of Arabidopsis embryo and endosperm transcriptome data sets
    • Schon, M.A., Nodine, M.D., Widespread contamination of Arabidopsis embryo and endosperm transcriptome data sets. Plant Cell 29 (2017), 608–617.
    • (2017) Plant Cell , vol.29 , pp. 608-617
    • Schon, M.A.1    Nodine, M.D.2
  • 42
    • 85032619208 scopus 로고    scopus 로고
    • (2013–2015). RepeatMasker Open-4.0.
    • Smit, A., Hubley, R., and Green P. (2013–2015). RepeatMasker Open-4.0.
    • Smit, A.1    Hubley, R.2    Green, P.3
  • 44
    • 77958569435 scopus 로고    scopus 로고
    • Induced pluripotency: history, mechanisms, and applications
    • Stadtfeld, M., Hochedlinger, K., Induced pluripotency: history, mechanisms, and applications. Genes Dev. 24 (2010), 2239–2263.
    • (2010) Genes Dev. , vol.24 , pp. 2239-2263
    • Stadtfeld, M.1    Hochedlinger, K.2
  • 45
    • 70350023619 scopus 로고    scopus 로고
    • The maternal-to-zygotic transition: a play in two acts
    • Tadros, W., Lipshitz, H.D., The maternal-to-zygotic transition: a play in two acts. Development 136 (2009), 3033–3042.
    • (2009) Development , vol.136 , pp. 3033-3042
    • Tadros, W.1    Lipshitz, H.D.2
  • 46
  • 48
    • 84883134780 scopus 로고    scopus 로고
    • Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing
    • Xue, Z., Huang, K., Cai, C., Cai, L., Jiang, C.Y., Feng, Y., Liu, Z., Zeng, Q., Cheng, L., Sun, Y.E., et al. Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing. Nature 500 (2013), 593–597.
    • (2013) Nature , vol.500 , pp. 593-597
    • Xue, Z.1    Huang, K.2    Cai, C.3    Cai, L.4    Jiang, C.Y.5    Feng, Y.6    Liu, Z.7    Zeng, Q.8    Cheng, L.9    Sun, Y.E.10
  • 50
    • 84946477969 scopus 로고    scopus 로고
    • The maternal-to-zygotic transition in higher plants: available approaches, critical limitations, and technical requirements
    • Zhao, P., Sun, M.X., The maternal-to-zygotic transition in higher plants: available approaches, critical limitations, and technical requirements. Curr. Top. Dev. Biol. 113 (2015), 373–398.
    • (2015) Curr. Top. Dev. Biol. , vol.113 , pp. 373-398
    • Zhao, P.1    Sun, M.X.2


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