-
1
-
-
79957511516
-
Maternal epigenetic pathways control parental contributions to Arabidopsis early embryogenesis
-
Autran, D., et al. (2011). Maternal epigenetic pathways control parental contributions to Arabidopsis early embryogenesis. Cell 145: 707–719.
-
(2011)
Cell
, vol.145
, pp. 707-719
-
-
Autran, D.1
-
2
-
-
84877919660
-
Parental contributions to the transcriptome of early plant embryos
-
Baroux, C., Autran, D., Raissig, M.T., Grimanelli, D., and Grossniklaus, U. (2013). Parental contributions to the transcriptome of early plant embryos. Curr. Opin. Genet. Dev. 23: 72–74.
-
(2013)
Curr. Opin. Genet. Dev.
, vol.23
, pp. 72-74
-
-
Baroux, C.1
Autran, D.2
Raissig, M.T.3
Grimanelli, D.4
Grossniklaus, U.5
-
3
-
-
84873135198
-
Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed
-
Belmonte, M.F., et al. (2013). Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed. Proc. Natl. Acad. Sci. USA 110: E435–E444.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. E435-E444
-
-
Belmonte, M.F.1
-
4
-
-
85012986069
-
Araport11: A complete reannota-tion of the Arabidopsis thaliana reference genome
-
Cheng, C.-Y., Krishnakumar, V., Chan, A., Thibaud-Nissen, F., Schobel, S., and Town, C.D. (2017). Araport11: a complete reannota-tion of the Arabidopsis thaliana reference genome. Plant J. 89: 789–804.
-
(2017)
Plant J
, vol.89
, pp. 789-804
-
-
Cheng, C.-Y.1
Krishnakumar, V.2
Chan, A.3
Thibaud-Nissen, F.4
Schobel, S.5
Town, C.D.6
-
5
-
-
84978218359
-
1,135 Genomes reveal the global pattern of polymorphism in Arabidopsis thaliana
-
Genomes Consortium (2016). 1,135 Genomes reveal the global pattern of polymorphism in Arabidopsis thaliana. Cell 166: 481–491.
-
(2016)
Cell
, vol.166
, pp. 481-491
-
-
-
6
-
-
84923366013
-
A mechanically sensitive cell layer regulates the physical properties of the Arabidopsis seed coat
-
Creff, A., Brocard, L., and Ingram, G. (2015). A mechanically sensitive cell layer regulates the physical properties of the Arabidopsis seed coat. Nat. Commun. 6: 6382.
-
(2015)
Nat. Commun.
, vol.6
, pp. 6382
-
-
Creff, A.1
Brocard, L.2
Ingram, G.3
-
7
-
-
84908431582
-
Non-equivalent contributions of maternal and paternal genomes to early plant embryogenesis
-
Del Toro-De León, G., García-Aguilar, M., and Gillmor, C.S. (2014). Non-equivalent contributions of maternal and paternal genomes to early plant embryogenesis. Nature 514: 624–627.
-
(2014)
Nature
, vol.514
, pp. 624-627
-
-
Del Toro-De León, G.1
García-Aguilar, M.2
Gillmor, C.S.3
-
8
-
-
84954542187
-
Zygotic genome activation in isogenic and hybrid plant embryos
-
Del Toro-De León, G., Lepe-Soltero, D., and Gillmor, C.S. (2016). Zygotic genome activation in isogenic and hybrid plant embryos. Curr. Opin. Plant Biol. 29: 148–153.
-
(2016)
Curr. Opin. Plant Biol.
, vol.29
, pp. 148-153
-
-
Del Toro-De León, G.1
Lepe-Soltero, D.2
Gillmor, C.S.3
-
9
-
-
0033180612
-
The BANYULS gene encodes a DFR-like protein and is a marker of early seed coat development
-
Devic, M., Guilleminot, J., Debeaujon, I., Bechtold, N., Bensaude, E., Koornneef, M., Pelletier, G., and Delseny, M. (1999). The BANYULS gene encodes a DFR-like protein and is a marker of early seed coat development. Plant J. 19: 387–398.
-
(1999)
Plant J
, vol.19
, pp. 387-398
-
-
Devic, M.1
Guilleminot, J.2
Debeaujon, I.3
Bechtold, N.4
Bensaude, E.5
Koornneef, M.6
Pelletier, G.7
Delseny, M.8
-
10
-
-
84871809302
-
STAR: Ultrafast universal RNA-seq aligner
-
Dobin, A., Davis, C.A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., and Gingeras, T.R. (2013). STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29: 15–21.
-
(2013)
Bioinformatics
, vol.29
, pp. 15-21
-
-
Dobin, A.1
Davis, C.A.2
Schlesinger, F.3
Drenkow, J.4
Zaleski, C.5
Jha, S.6
Batut, P.7
Chaisson, M.8
Gingeras, T.R.9
-
11
-
-
84888628324
-
Genomic imprinting: Insights from plants
-
Gehring, M. (2013). Genomic imprinting: insights from plants. Annu. Rev. Genet. 47: 187–208.
-
(2013)
Annu. Rev. Genet.
, vol.47
, pp. 187-208
-
-
Gehring, M.1
-
12
-
-
67149086996
-
Extensive demethylation of repetitive elements during seed development underlies gene imprinting
-
Gehring, M., Bubb, K.L., and Henikoff, S. (2009). Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science 324: 1447–1451.
-
(2009)
Science
, vol.324
, pp. 1447-1451
-
-
Gehring, M.1
Bubb, K.L.2
Henikoff, S.3
-
13
-
-
80051745935
-
Genomic analysis of parent-of-origin allelic expression in Arabidopsis thaliana seeds
-
Gehring, M., Missirian, V., and Henikoff, S. (2011). Genomic analysis of parent-of-origin allelic expression in Arabidopsis thaliana seeds. PLoS One 6: e23687.
-
(2011)
Plos One
, vol.6
-
-
Gehring, M.1
Missirian, V.2
Henikoff, S.3
-
14
-
-
67149119197
-
Genome-wide demethylation of Arabidopsis endosperm
-
Hsieh, T.F., Ibarra, C.A., Silva, P., Zemach, A., Eshed-Williams, L., Fischer, R.L., and Zilberman, D. (2009). Genome-wide demethylation of Arabidopsis endosperm. Science 324: 1451–1454.
-
(2009)
Science
, vol.324
, pp. 1451-1454
-
-
Hsieh, T.F.1
Ibarra, C.A.2
Silva, P.3
Zemach, A.4
Eshed-Williams, L.5
Fischer, R.L.6
Zilberman, D.7
-
15
-
-
79952143430
-
Regulation of imprinted gene expression in Arabidopsis endosperm
-
Hsieh, T.F., Shin, J., Uzawa, R., Silva, P., Cohen, S., Bauer, M.J., Hashimoto, M., Kirkbride, R.C., Harada, J.J., Zilberman, D., and Fischer, R.L. (2011). Regulation of imprinted gene expression in Arabidopsis endosperm. Proc. Natl. Acad. Sci. USA 108: 1755–1762.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 1755-1762
-
-
Hsieh, T.F.1
Shin, J.2
Uzawa, R.3
Silva, P.4
Cohen, S.5
Bauer, M.J.6
Hashimoto, M.7
Kirkbride, R.C.8
Harada, J.J.9
Zilberman, D.10
Fischer, R.L.11
-
16
-
-
33745458520
-
Maintenance of DNA methylation during the Arabidopsis life cycle is essential for parental imprinting
-
Jullien, P.E. (2006). Maintenance of DNA methylation during the Arabidopsis life cycle is essential for parental imprinting. Plant Cell 18: 1360–1372.
-
(2006)
Plant Cell
, vol.18
, pp. 1360-1372
-
-
Jullien, P.E.1
-
17
-
-
84906314062
-
Epigenetic reprogramming in plant sexual reproduction
-
Kawashima, T., and Berger, F. (2014). Epigenetic reprogramming in plant sexual reproduction. Nat. Rev. Genet. 15: 613–624.
-
(2014)
Nat. Rev. Genet.
, vol.15
, pp. 613-624
-
-
Kawashima, T.1
Berger, F.2
-
18
-
-
1642515876
-
One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation
-
Kinoshita, T. (2004). One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation. Science 303: 521–523.
-
(2004)
Science
, vol.303
, pp. 521-523
-
-
Kinoshita, T.1
-
19
-
-
84990206476
-
Conserved imprinting associated with unique epigenetic signatures in the Arabidopsis genus
-
Klosinska, M., Picard, C.L., and Gehring, M. (2016). Conserved imprinting associated with unique epigenetic signatures in the Arabidopsis genus. Nat. Plants 2: 16145.
-
(2016)
Nat. Plants
, vol.2
-
-
Klosinska, M.1
Picard, C.L.2
Gehring, M.3
-
20
-
-
84864360669
-
Epigenetic Mechanisms Underlying Genomic Imprinting in Plants
-
Köhler, C., Wolff, P., and Spillane, C. (2012). Epigenetic Mechanisms Underlying Genomic Imprinting in Plants. Annu. Rev. Plant Biol. 63: 331–352.
-
(2012)
Annu. Rev. Plant Biol.
, vol.63
, pp. 331-352
-
-
Köhler, C.1
Wolff, P.2
Spillane, C.3
-
21
-
-
84878220147
-
Spatiotemporal secretion of PEROXIDASE36 is required for seed coat mucilage extrusion in Arabidopsis
-
Kunieda, T., Shimada, T., Kondo, M., Nishimura, M., Nishitani, K., and Hara-Nishimura, I. (2013). Spatiotemporal secretion of PEROXIDASE36 is required for seed coat mucilage extrusion in Arabidopsis. Plant Cell 25: 1355–1367.
-
(2013)
Plant Cell
, vol.25
, pp. 1355-1367
-
-
Kunieda, T.1
Shimada, T.2
Kondo, M.3
Nishimura, M.4
Nishitani, K.5
Hara-Nishimura, I.6
-
22
-
-
79961123152
-
RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome
-
Li, B., and Dewey, C.N. (2011). RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12: 323.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 323
-
-
Li, B.1
Dewey, C.N.2
-
23
-
-
34848884577
-
Equivalent parental contribution to early plant zygotic development
-
Meyer, S., and Scholten, S. (2007). Equivalent parental contribution to early plant zygotic development. Curr. Biol. 17: 1686–1691.
-
(2007)
Curr. Biol.
, vol.17
, pp. 1686-1691
-
-
Meyer, S.1
Scholten, S.2
-
24
-
-
84919625828
-
SEEDSTICK is a master regulator of development and metabolism in the Arabidopsis seed doat
-
Mizzotti, C., Ezquer, I., Paolo, D., Rueda-Romero, P., Guerra, R.F., Battaglia, R., Rogachev, I., Aharoni, A., Kater, M.M., Caporali, E., and Colombo, L. (2014). SEEDSTICK is a master regulator of development and metabolism in the Arabidopsis seed doat. PLoS Genet. 10: e1004856.
-
(2014)
Plos Genet
, vol.10
-
-
Mizzotti, C.1
Ezquer, I.2
Paolo, D.3
Rueda-Romero, P.4
Guerra, R.F.5
Battaglia, R.6
Rogachev, I.7
Aharoni, A.8
Kater, M.M.9
Caporali, E.10
Colombo, L.11
-
25
-
-
84856473900
-
Maternal and paternal genomes contribute equally to the transcriptome of early plant embryos
-
Nodine, M.D., and Bartel, D.P. (2012). Maternal and paternal genomes contribute equally to the transcriptome of early plant embryos. Nature 482: 94–97.
-
(2012)
Nature
, vol.482
, pp. 94-97
-
-
Nodine, M.D.1
Bartel, D.P.2
-
26
-
-
78649806773
-
MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis
-
Nodine, M.D., and Bartel, D.P. (2010). MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis. Genes Dev. 24: 2678–2692.
-
(2010)
Genes Dev
, vol.24
, pp. 2678-2692
-
-
Nodine, M.D.1
Bartel, D.P.2
-
27
-
-
84990841521
-
Tissue and organ initiation in the plant embryo: A first time for everything
-
Palovaara, J., de Zeeuw, T., and Weijers, D. (2016). Tissue and organ initiation in the plant embryo: A first time for everything. Annu. Rev. Cell Dev. Biol. 32: 47–75.
-
(2016)
Annu. Rev. Cell Dev. Biol.
, vol.32
, pp. 47-75
-
-
Palovaara, J.1
De Zeeuw, T.2
Weijers, D.3
-
28
-
-
84906325490
-
Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting
-
Pignatta, D., Erdmann, R.M., Scheer, E., Picard, C.L., Bell, G.W., and Gehring, M. (2014). Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting. eLife 3: e03198.
-
(2014)
Elife
, vol.3
-
-
Pignatta, D.1
Erdmann, R.M.2
Scheer, E.3
Picard, C.L.4
Bell, G.W.5
Gehring, M.6
-
29
-
-
33344460777
-
TRANSPARENT TESTA10 encodes a laccase-like enzyme involved in oxidative polymerization of flavonoids in Arabidopsis seed coat
-
Pourcel, L. (2005). TRANSPARENT TESTA10 encodes a laccase-like enzyme involved in oxidative polymerization of flavonoids in Arabidopsis seed coat. Plant Cell 17: 2966–2980.
-
(2005)
Plant Cell
, vol.17
, pp. 2966-2980
-
-
Pourcel, L.1
-
31
-
-
84919371976
-
Cell type-specific transcriptome analysis in the early Arabidopsis thaliana embryo
-
Slane, D., Kong, J., Berendzen, K.W., Kilian, J., Henschen, A., Kolb, M., Schmid, M., Harter, K., Mayer, U., De Smet, I., Bayer, M., and Jurgens, G. (2014). Cell type-specific transcriptome analysis in the early Arabidopsis thaliana embryo. Development 141: 4831–4840.
-
(2014)
Development
, vol.141
, pp. 4831-4840
-
-
Slane, D.1
Kong, J.2
Berendzen, K.W.3
Kilian, J.4
Henschen, A.5
Kolb, M.6
Schmid, M.7
Harter, K.8
Mayer, U.9
De Smet, I.10
Bayer, M.11
Jurgens, G.12
-
32
-
-
57749121487
-
MATERNALLY EXPRESSED PAB C-TERMINAL, a novel imprinted gene in Arabidopsis, encodes the conserved C-terminal domain of polyadeny-late binding proteins
-
Tiwari, S., Schulz, R., Ikeda, Y., Dytham, L., Bravo, J., Mathers, L., Spielman, M., Guzmán, P., Oakey, R.J., Kinoshita, T., and Scott, R.J. (2008). MATERNALLY EXPRESSED PAB C-TERMINAL, a novel imprinted gene in Arabidopsis, encodes the conserved C-terminal domain of polyadeny-late binding proteins. Plant Cell 20: 2387– 2398.
-
(2008)
Plant Cell
, vol.20
-
-
Tiwari, S.1
Schulz, R.2
Ikeda, Y.3
Dytham, L.4
Bravo, J.5
Mathers, L.6
Spielman, M.7
Guzmán, P.8
Oakey, R.J.9
Kinoshita, T.10
Scott, R.J.11
-
33
-
-
0035856917
-
Seed development: Early paternal gene activity in Arabidopsis
-
Weijers, D., Geldner, N., Offringa, R., and Jurgens, G. (2001). Seed development: Early paternal gene activity in Arabidopsis. Nature 414: 709–710.
-
(2001)
Nature
, vol.414
, pp. 709-710
-
-
Weijers, D.1
Geldner, N.2
Offringa, R.3
Jurgens, G.4
-
34
-
-
79956012833
-
Genome-wide analysis reveals gene expression and metabolic network dynamics during embryo development in Arabidopsis
-
Xiang, D., Venglat, P., Tibiche, C., Yang, H., Risseeuw, E., Cao, Y., Babic, V., Cloutier, M., Keller, W., Wang, E., Selvaraj, G., and Datla, R. (2011). Genome-wide analysis reveals gene expression and metabolic network dynamics during embryo development in Arabidopsis. Plant Physiol. 156: 346–356.
-
(2011)
Plant Physiol
, vol.156
, pp. 346-356
-
-
Xiang, D.1
Venglat, P.2
Tibiche, C.3
Yang, H.4
Risseeuw, E.5
Cao, Y.6
Babic, V.7
Cloutier, M.8
Keller, W.9
Wang, E.10
Selvaraj, G.11
Datla, R.12
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